build-cran-binaries/.crow/build-all-versions-amd64.yaml

### Required extra vars
# ARCH (amd64)
# OS (alpine)
# OS_VERSION (3.22)
# R_VERSION (4.5)
# crow-dev pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5
# crow pipeline create --var ARCH=amd64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-amd64 --var K8S_INSTANCE_TYPE=AX42 --branch=main --log-level=info 5
when:
  - event: manual
    evaluate: 'task == "build-all-amd64"'

skip_clone: true

labels:
  platform: linux/amd64
  agent: artemis

matrix:
  include:
    - SPLIT_INTO: 5
      SPLIT_INDEX: 1
      BACKEND: kubernetes
    - SPLIT_INTO: 5
      SPLIT_INDEX: 2
      BACKEND: kubernetes
    - SPLIT_INTO: 5
      SPLIT_INDEX: 3
      BACKEND: kubernetes
    - SPLIT_INTO: 5
      SPLIT_INDEX: 4
      BACKEND: kubernetes
    - SPLIT_INTO: 5
      SPLIT_INDEX: 5
      BACKEND: kubernetes

depends_on:
  - build-all-versions-install-deps

steps:
  - name: 'Build binaries'
    image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION}
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: ""
      R_LIBS_USER: /mnt/cache/R-pkgs
      CCACHE_DIR: /mnt/cache/ccache
      NCPUS: 2
    volumes:
      - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'rFUSION', 'MediaNews'
      # pkgs = readRDS('/mnt/cache/pkgs_amd64.rds');
      - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run)
      - $XVFB -- R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); source('local/packages-to-build.R'); sprintf('Total# of remaining packages:%s', length(pkgs)); pkgs <- split(pkgs, cut(seq_along(pkgs), $SPLIT_INTO, labels = F))[[$SPLIT_INDEX]]; sprintf('# of packages for this job:%s', length(pkgs)); pkgs = setdiff(pkgs, c('RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'doBy', 'IDPmisc', 'frailtypack', 'afex', 'FrF2', 'DoE.base', 'agricolae', 'doFuture', 'fscaret', 'PHYLOGR', 'seewave', 'pls', 'relaimpo', 'geepack', 'gggenes', 'NPCirc', 'repmis', 'PNDSIBGE', 'lidR', 'poismf', 'neonstore', 'MachineShop', 'mvst', 'MacBehaviour', 'mcmcderive', 'RGIFT', 'KnowBR', 'netmeta', 'spdep', 'Rfast', 'compareGroups', 'ff', 'GsymPoint', 'RcppDynProg', 'comtradr', 'RcppDynProg', 'FD', 'PearsonDS', 'DCluster', 'gRc', 'mixlm', 'geospt', 'fdth', 'ffmanova', 'fiery', 'ffscrapr', 'cold', 'fiery', 'RcmdrPlugin.DoE', 'RcmdrPlugin.NMBU', 'RcmdrPlugin.RiskDemo', 'RcmdrPlugin.TeachStat', 'RcmdrPlugin.TeachingDemos', 'RcmdrPlugin.UCA', 'RcmdrPlugin.WorldFlora', 'RcmdrPlugin.aRnova', 'RcmdrPlugin.depthTools', 'RcmdrPlugin.orloca', 'RcmdrPlugin.sos', 'RcmdrPlugin.survival', 'RcmdrPlugin.temis', 'GWlasso', 'GWmodelVis')); library(future); plan('multisession'); foo = lapply(pkgs, function(x) bincraft::build_binary_package(x, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', tag_limit = 5L, s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE))" 2>&1
      # archive missed packages
      - R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)"
    backend_options:
      docker:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
          limits:
            memory: 20Gi
            cpu: 2000m
      kubernetes:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
          limits:
            memory: 20Gi
            cpu: 2000m
        nodeSelector:
          kubernetes.io/arch: ${ARCH}
          node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'