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build-cran-binaries/.crow/weekly-rebuild-reindex.yaml

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# Re-index and purge after weekly-rebuild-missing.
#
# weekly-rebuild-missing runs three shards per slot. Each of them replaces
# objects in place, so the slot's index still advertises the old MD5 and, for
# anything that had been served from source, no Built stamp. Re-indexing from
# inside a shard would mean three concurrent `upload_package_index()` calls on
# one prefix: `cranlike::update_PACKAGES()` lists the live bucket, so an early
# lister that uploads last publishes an index missing its siblings' work.
#
# So it happens exactly once per slot, here, after every shard has finished.
# `runs_on: [success, failure]` keeps that true when a shard fails; only an
# explicit cancel skips it, and this pipeline can then be triggered on its own.
variables:
# Mirrors the gate on weekly-rebuild-missing so a manual run re-indexes
# exactly the slots it rebuilt. A manual pipeline creation instantiates every
# file in .crow/, so the default must match no matrix row.
weekly_rebuild_missing:
description: "Manual run target: a specific <os>-<arch>, 'all' to run every os/arch in parallel, or 'none' to run nothing."
options:
- none
- all
- alpine-322-amd64
- alpine-322-arm64
- alpine-323-amd64
- alpine-323-arm64
- alpine-324-amd64
- alpine-324-arm64
- redhat-8-amd64
- redhat-8-arm64
- redhat-9-amd64
- redhat-9-arm64
- redhat-10-amd64
- redhat-10-arm64
- ubuntu-2204-amd64
- ubuntu-2204-arm64
- ubuntu-2404-amd64
- ubuntu-2404-arm64
- ubuntu-2604-amd64
- ubuntu-2604-arm64
default: none
when:
- event: cron
cron: weekly-rebuild-missing-${OS}-${ARCH}
- event: manual
evaluate: 'weekly_rebuild_missing == "all" || weekly_rebuild_missing == "${OS}-${ARCH}"'
depends_on:
- weekly-rebuild-missing
runs_on: [success, failure]
skip_clone: true
labels:
group: rpkgs-${ARCH}
matrix:
include:
- OS: alpine-322
ARCH: amd64
R_VERSION: 4.5.3
IMG: alpine:3.22
- OS: alpine-322
ARCH: arm64
R_VERSION: 4.5.3
IMG: alpine:3.22
- OS: alpine-323
ARCH: amd64
R_VERSION: 4.5.3
IMG: alpine:3.23
- OS: alpine-323
ARCH: arm64
R_VERSION: 4.5.3
IMG: alpine:3.23
- OS: alpine-324
ARCH: amd64
R_VERSION: 4.5.3
IMG: alpine:3.24
- OS: alpine-324
ARCH: arm64
R_VERSION: 4.5.3
IMG: alpine:3.24
- OS: redhat-8
ARCH: amd64
R_VERSION: 4.4.3
IMG: redhat:8
- OS: redhat-8
ARCH: arm64
R_VERSION: 4.4.3
IMG: redhat:8
- OS: redhat-9
ARCH: amd64
R_VERSION: 4.4.3
IMG: redhat:9
- OS: redhat-9
ARCH: arm64
R_VERSION: 4.4.3
IMG: redhat:9
- OS: redhat-10
ARCH: amd64
R_VERSION: 4.5.3
IMG: redhat:10
- OS: redhat-10
ARCH: arm64
R_VERSION: 4.5.3
IMG: redhat:10
- OS: ubuntu-2204
ARCH: amd64
R_VERSION: 4.4.3
IMG: ubuntu:jammy
- OS: ubuntu-2204
ARCH: arm64
R_VERSION: 4.4.3
IMG: ubuntu:jammy
- OS: ubuntu-2404
ARCH: amd64
R_VERSION: 4.4.3
IMG: ubuntu:noble
- OS: ubuntu-2404
ARCH: arm64
R_VERSION: 4.4.3
IMG: ubuntu:noble
- OS: ubuntu-2604
ARCH: amd64
R_VERSION: 4.4.3
IMG: ubuntu:resolute
- OS: ubuntu-2604
ARCH: arm64
R_VERSION: 4.4.3
IMG: ubuntu:resolute
steps:
- name: 'Re-index the slot'
image: reg.devxy.io/rpkgs/build-env-${IMG}
pull: true
environment:
OTEL_R_TRACES_EXPORTER: none
OTEL_R_LOGS_EXPORTER: none
OTEL_R_METRICS_EXPORTER: none
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GIT_USER: pat-s
R_LIBS_USER: /mnt/cache/R-pkgs
R_VERSION: ${R_VERSION}
PLATFORM: ${OS}
ARCH: ${ARCH}
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- mkdir -p /mnt/cache/R-pkgs
- rm -rf /mnt/cache/R-pkgs/00LOCK-*
- /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
# The codename is detected from the image's /etc/os-release.
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
- |
for RBIN in /opt/R/[0-9]*/bin/R; do
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
done
- name: Purge CDN cache
image: reg.devxy.io/docker.io/library/alpine:3.24
environment:
OTEL_R_TRACES_EXPORTER: none
OTEL_R_LOGS_EXPORTER: none
OTEL_R_METRICS_EXPORTER: none
BUNNYNET_API_KEY:
from_secret: BUNNYNET_API_KEY
# cran.rpkgs.com and cran.allianceswisspass.devxy.io are on separate
# Bunny pull zones, so both must be purged after the shared origin changes.
BUNNY_PULLZONES: '3857050 cran.allianceswisspass.devxy.io'
commands:
- apk add --no-cache -q bash curl jq
# Crow carries the checkout from the re-index step into this step.
- bash scripts/purge_cdn_zone.sh "$BUNNYNET_API_KEY" $BUNNY_PULLZONES
# Runs on every row rather than on one designated slot: a cron fires only
# its own slot's row, so gating on a named slot would leave every other
# slot unpurged. A manual "all" run therefore purges the zone 18 times,
# which is a cheap API call and rare.
#
# Run it even when the re-index above failed: the objects were still
# replaced, and a stale edge is exactly what keeps them hidden.
when:
- status: [success, failure]
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