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## Problem A fresh `weekly-audit-missing` run followed by `weekly-rebuild-missing` reported that almost every package "already exists in the remote bucket", even though the audit had just flagged them as missing. Root cause: the audit's Forgejo-issue update matched the existing `### <arch>` subsection by its **bare** header (`### arm64`) while writing headers with a ` (N missing, M to rebuild)` suffix. The equality test never matched, so every run **appended** a new block instead of replacing the old one. Issue #63 had accumulated 38 arch subsections under `## alpine-323` where 2 are expected (75 total across the alpine platforms; body ~77k lines). `fetch-rebuild-packages-from-issue.R` reads the **first** matching block, which was the oldest snapshot. So the rebuild kept re-checking a months-old list (180 packages, mostly already built), while the genuinely-missing packages, ~1921 for alpine-323/arm64 in the freshest block, were never fed to the rebuild and the backlog grew silently. ## Changes - **`local/weekly-missing-binaries-audit.R`**: match arch subsections by prefix (`^### <arch>( |$)`) and remove **all** blocks for that arch before writing one fresh block. Accumulation now self-heals on every run. - **`local/dedupe-audit-issue.R`** (new): one-off cleanup that collapses each `## platform` section to the freshest block per arch across the three OS-family issues. Supports `DRY_RUN=1`. - **`local/fetch-rebuild-packages-from-issue.R`**: prefer the audit's freshly-written RDS (overwritten each run, immune to issue-body drift), falling back to issue parsing when absent. ## Validation Simulated the dedupe logic against the live #63 body: **75 → 8** arch subsections, body 77k → 28k lines, and the kept alpine-323/arm64 block correctly resolves to `GARCH.X (3.0)` (the stale first block held `2.0`). ## Follow-ups (not in this PR) - `alpine-321` is audited but has no row in the rebuild matrix (7,230 missing, never rebuilt). - An `alpine-324` section exists in the issue but is in neither matrix. Reviewed-on: #138
150 lines
4.5 KiB
R
150 lines
4.5 KiB
R
# One-off maintenance: collapse the duplicate arch subsections that accumulated
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# in the "Missing package binaries for latest version (<family>)" issues.
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#
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# A bug in weekly-missing-binaries-audit.R matched the existing "### <arch>"
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# subsection by its bare header while writing headers with a
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# " (N missing, M to rebuild)" suffix, so every audit run appended a fresh block
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# instead of replacing it. This script rewrites each "## <platform>" section to
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# keep only the *last* (freshest) block per arch. The audit fix prevents further
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# accumulation; this cleans up what is already there.
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#
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# Env: FORGEJO_TOKEN (required). DRY_RUN=1 to preview counts without patching.
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library(httr2, quietly = TRUE)
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forgejo_base <- "https://git.devxy.io/api/v1"
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repo <- "devxy/build-cran-binaries"
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token <- Sys.getenv("FORGEJO_TOKEN")
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dry_run <- nchar(Sys.getenv("DRY_RUN")) > 0
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if (nchar(token) == 0) {
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stop("FORGEJO_TOKEN env var is not set")
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}
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issue_titles <- c(
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"Missing package binaries for latest version (Alpine)",
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"Missing package binaries for latest version (Ubuntu)",
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"Missing package binaries for latest version (Red Hat)"
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)
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# Collapse one "## <platform>" block: keep only the last block per arch,
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# emitted in order of first appearance. `pl[1]` is the "## <platform>" header.
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dedupe_platform <- function(pl) {
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sub_hdr <- which(grepl("^### ", pl))
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if (length(sub_hdr) == 0) {
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return(pl)
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}
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preamble <- pl[seq_len(sub_hdr[1] - 1)]
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sub_end <- c(sub_hdr[-1] - 1, length(pl))
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blocks <- lapply(seq_along(sub_hdr), function(k) {
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pl[seq(sub_hdr[k], sub_end[k])]
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})
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arches <- vapply(
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blocks,
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function(b) sub("^### (\\S+).*", "\\1", b[1]),
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character(1)
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)
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# Index of the last block for each arch, kept in first-appearance order.
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last_idx <- vapply(
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unique(arches),
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function(a) max(which(arches == a)),
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integer(1)
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)
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keep <- sort(last_idx)
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out <- preamble
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for (i in keep) {
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out <- c(out, blocks[[i]])
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}
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out
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}
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process_issue <- function(title) {
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search_url <- sprintf(
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"%s/repos/%s/issues?type=issues&state=open&q=%s&limit=50",
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forgejo_base,
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repo,
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utils::URLencode(title, reserved = TRUE)
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)
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resp <- request(search_url) |>
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req_headers(Authorization = paste("token", token)) |>
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req_perform()
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issues <- resp_body_json(resp, simplifyVector = FALSE)
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match_idx <- which(vapply(issues, function(x) x$title, character(1)) == title)
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if (length(match_idx) == 0) {
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cat(sprintf("[skip] No issue found: %s\n", title))
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return(invisible())
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}
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issue_number <- issues[[match_idx[1]]]$number
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body <- issues[[match_idx[1]]]$body
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if (is.null(body) || nchar(body) == 0) {
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cat(sprintf("[skip] Empty body: #%d %s\n", issue_number, title))
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return(invisible())
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}
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lines <- strsplit(body, "\n", fixed = TRUE)[[1]]
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before <- sum(grepl("^### ", lines))
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# Split off the "## Excluded packages" footer so it is preserved verbatim.
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excl_idx <- which(lines == "## Excluded packages")
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footer <- character(0)
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if (length(excl_idx) > 0) {
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pre_dash <- which(lines == "---" & seq_along(lines) < excl_idx[1])
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cut <- if (length(pre_dash) > 0) pre_dash[length(pre_dash)] else excl_idx[1]
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footer <- lines[seq(cut, length(lines))]
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lines <- lines[seq_len(cut - 1)]
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}
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# Platform headers ("## <platform>"); everything before the first is preamble.
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plat_idx <- which(grepl("^## ", lines))
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if (length(plat_idx) == 0) {
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cat(sprintf("[skip] No platform sections: #%d %s\n", issue_number, title))
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return(invisible())
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}
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top <- lines[seq_len(plat_idx[1] - 1)]
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plat_end <- c(plat_idx[-1] - 1, length(lines))
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new_lines <- top
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for (j in seq_along(plat_idx)) {
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pl <- lines[seq(plat_idx[j], plat_end[j])]
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new_lines <- c(new_lines, dedupe_platform(pl))
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}
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if (length(footer) > 0) {
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new_lines <- c(new_lines, footer)
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}
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after <- sum(grepl("^### ", new_lines))
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cat(sprintf(
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"#%d %s: %d -> %d arch subsections%s\n",
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issue_number,
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title,
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before,
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after,
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if (dry_run) " (dry run, not patched)" else ""
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))
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if (dry_run) {
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return(invisible())
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}
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patch_url <- sprintf(
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"%s/repos/%s/issues/%d",
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forgejo_base,
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repo,
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issue_number
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)
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request(patch_url) |>
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req_headers(
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Authorization = paste("token", token),
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`Content-Type` = "application/json"
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) |>
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req_body_json(list(body = paste(new_lines, collapse = "\n"))) |>
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req_method("PATCH") |>
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req_perform()
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cat(sprintf(" patched #%d\n", issue_number))
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}
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for (t in issue_titles) {
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process_issue(t)
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}
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cat("Done.\n")
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