FROM ubuntu:jammy

ARG R_VERSION=4.4.1
ENV PATH=/opt/R/${R_VERSION}/bin:$PATH
ENV TZ="Europe/Berlin"
ENV DEBIAN_FRONTEND=noninteractive 

ENV ARCH=arm64
ENV NCPUS=2

ENV AWS_ACCESS_KEY_ID=""
ENV AWS_SECRET_ACCESS_KEY=""
ENV PGPASS=""

ARG GITHUB_PAT

# xvfb: for graphical pkgs requiring tcl, like gWidgets2tcltk
RUN apt update && apt install -y --no-install-recommends gdebi-core g++ gfortran libbz2-dev libblas-dev libicu-dev liblapack-dev liblzma-dev libpaper-utils libpcre2-dev libtcl8.6 libtk8.6 libxt6 unzip zip zlib1g-dev libpcre3-dev libopenblas-dev curl ca-certificates make ccache htop libgit2-dev git libpq-dev libxml2-dev libgit2-dev cmake xvfb libcurl4-openssl-dev

### CUSTOM DEPENDENCIES 
# These usually are not packaged in OS repositories and need to be installed from source
# - JAGS (needed for runjags which itself is again a dependency of many packages)
RUN curl -q -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure --enable-silent-rules && make 2>&1 >/dev/null && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..

### INSTALL R
RUN curl -O "https://devxy-r-builds.s3.eu-central-2.amazonaws.com/2204/r-${R_VERSION}_1_arm64.deb"
RUN gdebi -n -qq "r-${R_VERSION}_1_arm64.deb" && "rm r-${R_VERSION}_1_arm64.deb"
RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'

# Makevars
RUN mkdir -p /root/.R && bash -c 'echo -e "CXX_STD = CXX14\nCC=ccache gcc\nCPP=ccache gcc\nCXX=ccache g++\nCXX11=ccache g++\nCXX14=ccache g++\nCXX17=ccache g++\nF77=ccache /usr/bin/gfortran\nFC=ccache /usr/bin/gfortran" >> /root/.R/Makevars'

# R repos
RUN bash -c 'echo -e "options(pkg.sysreqs_verbose = TRUE, crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL, repos = structure(c(CRAN = \"https://cloud.r-project.org\", INLA = \"https://inla.r-inla-download.org/R/stable\")))" > ~/.Rprofile'

COPY . .

RUN R -q -e 'pak::local_install_deps()'
# remove secrets from COPY
RUN touch /.Renviron /.envrc && rm /.Renviron /.envrc
RUN R CMD INSTALL . && rm -rf r-pkg-binaries

CMD ["/bin/bash"]