### Required extra vars # ARCH (amd64) # OS (alpine) # OS_VERSION (3.22) # R_VERSION (4.5.3) # Skip list lives in local/excluded-packages.json (read by local/build-all.R). # crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.22 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --log-level=info 7 # crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --log-level=info 5 # crow pipeline create --var ARCH=arm64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5 when: - event: manual evaluate: 'task == "build-all-arm64"' skip_clone: true labels: agent: gaia matrix: include: # - SPLIT_INTO: 5 # SPLIT_INDEX: 1 # BACKEND: kubernetes # - SPLIT_INTO: 5 # SPLIT_INDEX: 2 # BACKEND: kubernetes # - SPLIT_INTO: 5 # SPLIT_INDEX: 3 # BACKEND: kubernetes # - SPLIT_INTO: 5 # SPLIT_INDEX: 4 # BACKEND: kubernetes # - SPLIT_INTO: 5 # SPLIT_INDEX: 5 # BACKEND: kubernetes - SPLIT_INTO: 4 SPLIT_INDEX: 1 BACKEND: docker - SPLIT_INTO: 4 SPLIT_INDEX: 2 BACKEND: docker - SPLIT_INTO: 4 SPLIT_INDEX: 3 BACKEND: docker - SPLIT_INTO: 4 SPLIT_INDEX: 4 BACKEND: docker # - SPLIT_INTO: 5 # SPLIT_INDEX: 5 # BACKEND: docker depends_on: - build-all-versions-install-deps-arm64 steps: - name: 'Build binaries' image: 'reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}' pull: true environment: RED_HAT_DEV_PW: from_secret: RED_HAT_DEV_PW B2_S3_ACCESS_KEY: from_secret: B2_S3_ACCESS_KEY B2_S3_SECRET_KEY: from_secret: B2_S3_SECRET_KEY PGPASS: from_secret: PGPASS REPO_RO_TOKEN: from_secret: REPO_RO_TOKEN GITHUB_PAT: from_secret: GITHUB_PAT # normal env vars GIT_USER: pat-s # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs CCACHE_DIR: /mnt/cache/ccache NCPUS: 2 volumes: - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/$R_VERSION/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1 - | PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2) for RBIN in /opt/R/*/bin/R; do RV=$(basename "$(dirname "$(dirname "$RBIN")")") RMINOR=$(echo "$RV" | cut -d. -f1-2) [ "$RMINOR" = "$PRIMARY_MINOR" ] && continue echo "=== R-minor-sensitive pass under R $RV ===" $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- "$(dirname "$RBIN")/Rscript" local/build-all.R --sensitive-only $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1 || true done # archive missed packages - /opt/R/$R_VERSION/bin/R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)" backend_options: docker: resources: requests: memory: 5Gi cpu: 1000m limits: memory: 20Gi cpu: 2000m kubernetes: resources: requests: memory: 5Gi cpu: 1000m limits: memory: 20Gi cpu: 2000m nodeSelector: kubernetes.io/arch: ${ARCH} node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE} tolerations: - key: 'CI' operator: 'Equal' value: 'true' effect: 'NoSchedule' - name: 'Upload package indexes' image: 'reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}' pull: true environment: B2_S3_ACCESS_KEY: from_secret: B2_S3_ACCESS_KEY B2_S3_SECRET_KEY: from_secret: B2_S3_SECRET_KEY R_LIBS_USER: /mnt/cache/R-pkgs volumes: - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache commands: - | CODENAME=$(/opt/R/$R_VERSION/bin/Rscript -e "cat(bincraft::set_codename(NULL))") /opt/R/$R_VERSION/bin/R -q -e "bincraft::upload_package_index(codename = '$CODENAME', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" for RBIN in /opt/R/*/bin/R; do RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2) /opt/R/$R_VERSION/bin/R -q -e "bincraft::upload_package_index(codename = '$CODENAME', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true done backend_options: docker: resources: requests: memory: 5Gi cpu: 1000m limits: memory: 20Gi cpu: 2000m kubernetes: resources: requests: memory: 5Gi cpu: 1000m limits: memory: 20Gi cpu: 2000m nodeSelector: kubernetes.io/arch: ${ARCH} node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE} tolerations: - key: 'CI' operator: 'Equal' value: 'true' effect: 'NoSchedule'