when:
  - event: manual
    evaluate: 'build == "all"'
  - event: manual
    evaluate: 'build == "redhat-8-amd64"'
  - event: manual
    evaluate: 'build == "all-amd64"'

skip_clone: true

steps:
  - name: 'Build binaries'
    secrets: [red_hat_dev_pw, aws_access_key_id, aws_secret_access_key, pgpass, git_ro_token, GITHUB_PAT]
    image: docker.io/devxygmbh/amd64-binaries-r-redhat-8
    pull: true
    # to ensure the PACKAGES upload step is being executed
    failure: ignore
    environment:
      GIT_USER: pat-s
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: redhat-8
      BLOCK: 1833:1833
      ARCH: amd64
      NCPUS: 4
      # MEMORY: 14Gi
      # INSTANCE_TYPE: ccx23
      STRATEGY: sequential
    # volumes:
    #   - amd64-binaries-r-dep-cache-redhat-8:/mnt/cache
    commands:
      # download latest package version (avoid having to rebuild image every time)
      # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
      - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
      # for some reason paks pkgcache is often corrupt
      - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
      - R -q -e 'pak::meta_update()'
      - R -q -e 'packageVersion("bincraftR")'
      # more complicated system dependencies which pak cannot resolve
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point
      ### Check
      # - Rsymphony/ROI.plugin.symphony/adea/PortfolioAnalytics -> can't install/link external SYMPHONY lib (only on RHEL, as for others syslib exists)
      # - Rglpk
      # biplotbootGUI: somehow ubuntu still hangs even when using xvfb-run
      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(devxy = 'https://cran.devxy.io/amd64/rhel8/latest', CRAN = 'https://cloud.r-project.org'))); library(dplyr); library(bincraftR); cran_pkgs = tools::CRAN_package_db()[['Package']]; '%nin%' <- Negate('%in%'); foo = query_metadata_table() |> filter(platform == 'redhat-8', arch == 'amd64') |> distinct(name) |> pull(name); pkgs <- dput(cran_pkgs[cran_pkgs %nin% foo][0:300]); pkgs = c('Achilles', 'adass', 'adea', 'adelie', 'afex', 'afthd', 'ag5Tools',  'AgroReg', 'AgroTech', 'aIc'); options(progressr.enable = TRUE); pkgs = c('adamethods', 'adaptIVPT', 'adass', 'adelie', 'AgroReg', 'aIc',  'alphashape3d', 'amadeus', 'ANOVAShiny', 'ANOVAShiny2', 'Anthropometry',  'Apollonius', 'appeears', 'archive', 'Arothron', 'atable', 'atom4R',  'autoMFA', 'babelmixr2', 'bayesdfa', 'BayesfMRI', 'bcROCsurface',  'bdlp', 'bfsMaps', 'bigGP', 'bigrquerystorage', 'biplotbootGUI',  'BiplotGUI', 'bivpois', 'blatr', 'bltm', 'bRacatus', 'bridger',  'BRugs', 'BSPADATA', 'BSSoverSpace', 'CAESAR.Suite', 'camtrapR',  'canadamaps', 'canadianmaps', 'canaper', 'capm', 'cartograflow',  'cartogram', 'cartogramR', 'cartographer', 'cartographr', 'CatastRo',  'catfun', 'cauchypca', 'CCAMLRGIS', 'CCd', 'cdrcR', 'CDSE', 'censable',  'centerline', 'centr', 'Certara.R', 'cffdrs', 'cft', 'cheem',  'chessboard', 'chilemapas', 'chirps', 'choosepc', 'cleangeo',  'cleanTS', 'clrng', 'ClusTCR2', 'clusterMI', 'ClusterStability',  'ClustGeo', 'cnmap', 'CoastlineFD', 'cols', 'comorosmaps', 'CompositionalML',  'CompositionalRF', 'concaveman', 'condor', 'conleyreg', 'constrainedKriging',  'CoOL', 'CoordinateCleaner', 'CopernicusDEM', 'CopernicusMarine',  'corona', 'corrfuns', 'corrViz', 'covatest', 'covid19sf', 'covidcast',  'CPC', 'cpmr', 'cppcontainers', 'cpss', 'CptNonPar', 'cropDemand',  'CropScapeR', 'cropZoning', 'crsuggest', 'CRTspat', 'crumble',  'CruzPlot', 'crwbmetareg', 'cryptography', 'cshapes', 'CSHShydRology',  'csodata', 'csquares', 'ctmm', 'ctpm', 'cubble', 'cvap', 'CvmortalityMult',  'cyclestreets', 'D3mirt', 'dafishr', 'damAOI', 'dataone', 'datapack',  'dataspice', 'datazoom.amazonia', 'DCluster', 'dcortools', 'dcorVS',  'deepMOU', 'densityarea', 'DescrTab2', 'DescToolsAddIns', 'DFD',  'DGEAR', 'dggridR', 'DIFM', 'DImodelsVis', 'dirttee', 'disaggregation',  'disclosuR', 'dispeRse', 'distanceto', 'divseg', 'divvy', 'DNLC',  'doMPI', 'doolkit', 'dots', 'DrDimont', 'DRHotNet', 'drugprepr',  'dsims', 'dsmSearch', 'dssd', 'Dtableone', 'dtComb', 'dwp', 'dynamicSDM',  'DynForest', 'EasyDescribe', 'ebirdst', 'ebvcube', 'ech', 'ecochange',  'ecocomDP', 'ediblecity', 'eDITH', 'EFDR', 'eiExpand', 'eixport',  'eks', 'EMbC', 'emdi', 'EmiR', 'EmissV', 'emstreeR', 'ENMTools',  'epiCo', 'epifitter', 'epilogi', 'EpiStats', 'epm', 'EQUALrepeat',  'EQUALSTATS', 'eSDM', 'ETRep', 'evapoRe', 'EventDetectGUI', 'EventPredInCure',  'evian', 'EvidenceSynthesis', 'evident', 'evinf', 'evola', 'evolMap',  'Evomorph', 'evoper', 'EvoPhylo', 'evoTS', 'evreg', 'EWSmethods',  'exactextractr', 'exams2learnr', 'exams2sakai', 'exams.forge',  'exams.mylearn', 'ExcelFunctionsR', 'excel.link', 'excluder',  'exdqlm', 'executablePackeR', 'expDB', 'expectreg', 'ExpertChoice',  'explainer', 'ExplainPrediction', 'explor', 'exploratory', 'expowo',  'extRatum', 'ezmmek', 'fable.ata', 'fableCount', 'facmodCS',  'facmodTS', 'factset.protobuf.stach.v2', 'FADPclust', 'fakemake',  'fakir', 'FAMetA', 'familial', 'fangs', 'fanovaGraph', 'fasstr',  'fastadi', 'FastCUB', 'fastFMM', 'fastglmpca', 'FAST.R', 'fat2Lpoly',  'FAVAR', 'fbati', 'fcaR', 'fcfdr', 'fcl', 'fcr', 'FCVAR', 'fdq',  'fect', 'fedstatAPIr', 'feltr', 'ferrn', 'fgdr', 'fgeo', 'fgeo.analyze',  'fgeo.plot', 'fgm', 'FIESTA', 'FIESTAutils', 'filters', 'finch',  'findSVI', 'fisheye', 'fishRman', 'fitbitViz', 'fitlandr', 'flexpolyline',  'FlexScan', 'flightplot', 'FLightR', 'fluidsynth', 'forestdata',  'forestecology', 'ForestTools', 'FORTLS', 'frscore', 'fsn', 'fsr',  'fude', 'FuzzyImputationTest', 'gamblers.ruin.gameplay', 'gatoRs',  'gaussplotR', 'gbm.auto', 'gdalUtilities', 'GeNetIt', 'GeoAdjust',  'geoAr', 'geobr', 'geocausal', 'geocmeans', 'geodimension', 'geodiv',  'geodrawr', 'geofi', 'GeoFIS', 'geogenr', 'geogrid', 'geoheatmap',  'geoidep', 'geojson', 'geojsonio'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-8'))"
      ### Manual pkg builds
      # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
      # RInno: Windows-only
      # skedastic: waiting for ROI.plugin.qpoases (https://gitlab.com/roigrp/solver/ROI.plugin.qpoases/-/issues/1)
      # rswipl: ccache issues: https://github.com/mgondan/rswipl/issues/3 -> solved
      # Rpoppler: https://github.com/rstudio/r-system-requirements/pull/179/
      # ROracle: sysdep missing -> create rule
      # ROI.plugin.qpoases: https://gitlab.com/roigrp/solver/ROI.plugin.qpoases/-/issues/1
      # ROI.plugin.cplex: checking for cplex... no -> requires propriatary software IBM Cplex
      # RmecabKo: fatal error: mecab.h: No such file or directory
      # rmarchingcubes: error: narrowing conversion of '-1' from 'int' to 'char' [-Wnarrowing] -> https://github.com/shwilks/rmarchingcubes/issues/3
      # RcppMeCab: /bin/bash: line 2: mecab-config: command not found -> https://github.com/rstudio/r-system-requirements/pull/180
      # Rcplex: checking for cplex... no -> requires propriatary software IBM Cplex
      # Rblpapi: Unknown architecture: aarch64. Exiting. -> https://github.com/Rblp/Rblpapi/issues/399
      # Rbeast: aarch64 issue -> https://github.com/zhaokg/Rbeast/issues/29
      # ravetools: checking for FFTW... configure: error: Package requirements (fftw3) were not met: -> fftw3 rule needed
      # Racmacs -> rmarchingcubes
      # minic: /usr/include/c++/13/bits/stl_algo.h:5805:5: note:   template argument deduction/substitution failed:
      # KSgeneral -> aligned_mem.h:6:10: fatal error: mm_malloc.h: No such file or directory -> https://github.com/d-dimitrova/KSgeneral/issues/1
      # gpuR -> /usr/bin/ld: cannot find -lOpenCL: No such file or directory -> no GPU avail
      # clrng -> gpuR
      # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
      # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
      # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent

      # magickGUI, biplotbootGUI
      # ymd (alpine, voi)
      # tfrmtbuilder -> V8 (alpine)
      # Rcmdr (alpine)
      # readstata13 (alpine)
      # - xvfb-run R -q -e 'options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c( "RcmdrPlugin.orloca", "RcmdrPlugin.PcaRobust", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.ROC", "RcmdrPlugin.sos" , "RcmdrPlugin.survival", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.TeachStat", "RcmdrPlugin.temis", "RcmdrPlugin.UCA", "RcmdrPlugin.WorldFlora", "streamDAG", "stan4bart", "snplinkage", "saeHB.panel.beta", "rTwig", "rswipl", "RPointCloud", "rPDBapi", "rolog", "rmcfs", "rjags", "ResultModelManager", "RcppCWB", "RcmdrPlugin.WorldFlora", "RcmdrPlugin.UCA", "RcmdrPlugin.temis", "RcmdrPlugin.TeachStat", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.survival", "RcmdrPlugin.sos", "RcmdrPlugin.ROC", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.PcaRobust", "RclusTool", "Rbeast", "rayrender", "quanteda.textmodels", "polmineR", "plotBart", "NlinTS", "ndtv", "overtureR", "mathml", "magickGUI", "lgpr", "KappaGUI", "historicalborrow", "GSODR", "GRIDCOPULA", "googleAnalyticsR", "fluidsynth", "EventDetectGUI", "evalITR", "EBcoBART", "deeptrafo", "dbarts", "CRE", "countSTAR", "bartMan", "bartCause", "altmeta", "EthSEQ", "dartR.spatial", "dartR.sim", "gwid", "Mega2R", "priorCON", "prior3D", "MCARtest", "designmatch", "highs", "ROI.plugin.highs", "GPCMlasso"); library(bincraftR); options(progressr.enable = TRUE); foo = lapply(pkgs, function(x) build_binary_package(x, debug = FALSE, force = TRUE, platform = "amd64"))'
    backend_options:
      kubernetes:
        ### PROD-parallel
        resources:
          requests:
            memory: 5Gi
            cpu: 2000m
          limits:
            memory: 20Gi
            cpu: 3000m
        ### PROD-sequential
        # resources:
        #   requests:
        #     memory: 14Gi
        #     cpu: 2000m
        #   limits:
        #     memory: 14Gi
        #     cpu: 3000m
        # DEBUG
        # resources:
        #   requests:
        #     memory: 4Gi
        #     cpu: 2000m
        #   limits:
        #     memory: 4Gi
        #     cpu: 2000m
        nodeSelector:
          kubernetes.io/arch: amd64
          node.kubernetes.io/instance-type: AX42
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'