#!/bin/bash ### install R PLATFORM_ID=$(cat /etc/os-release | grep 'PLATFORM_ID=' | cut -d'=' -f2 | tr -d '"') if [ $PLATFORM_ID = "platform:el9" ]; then subscription-manager register --username pat-s --password $RED_HAT_DEV_PW subscription-manager repos --enable codeready-builder-for-rhel-9-$(arch)-rpms dnf -y install git rsync # dnf update -y # FIXME: protect PW echo "R Version: ${R_VERSION}" echo "Downloading R-${R_VERSION}.rpm from S3..." curl -o /tmp/R-${R_VERSION}.rpm https://cynkra-r-builds-arm64.s3.eu-central-1.amazonaws.com/el9/R-"${R_VERSION}"-1-1."$(arch)".rpm dnf install -y /tmp/R-${R_VERSION}.rpm fi export PATH=/opt/R/${R_VERSION}/bin:$PATH ### install R packages needed for building R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))' R -q -e 'options(repos = c(CRAN="https://stat.ethz.ch/CRAN/")); pak::pak(c("pkgbuild", "cranlike", "drat"))' ### install awscli curl -s "https://awscli.amazonaws.com/awscli-exe-linux-aarch64.zip" -o "awscliv2.zip" unzip -qq awscliv2.zip ./aws/install rm -rf awscliv2.zip mkdir /root/.aws echo -e "[default]\n aws_access_key_id=AKIATHTKSC6FRVE5LNE7\n aws_secret_access_key=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\n" >/root/.aws/credentials