when: - event: manual evaluate: 'build == "all"' # - event: manual # evaluate: 'build == "alpine-321-arm64"' - event: manual evaluate: 'build == "alpine-321-arm64-0"' - event: manual evaluate: 'build == "all-arm64"' skip_clone: true steps: - name: 'Build binaries' image: docker.io/devxygmbh/arm64-binaries-r-alpine-321 pull: true environment: RED_HAT_DEV_PW: from_secret: RED_HAT_DEV_PW HETZNER_S3_ACCESS_KEY_K3S: from_secret: HETZNER_S3_ACCESS_KEY_K3S HETZNER_S3_SECRET_KEY_K3S: from_secret: HETZNER_S3_SECRET_KEY_K3S PGPASS: from_secret: PGPASS GIT_RO_TOKEN: from_secret: GIT_RO_TOKEN GITHUB_PAT: from_secret: GITHUB_PAT # normal env vars GIT_USER: pat-s # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs CCACHE_DIR: /mnt/cache/ccache PLATFORM: alpine-321 BLOCK_START: 17601 BLOCK_END: 19800 ARCH: arm64 NCPUS: 2 STRATEGY: sequential # volumes: # - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache commands: - git clone -q https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/build-binaries.git . - R -q -e 'packageVersion("bincraftR")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews' - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('A3', 'abmR', 'abtest', 'AccelStab', 'Achilles', 'actel', 'actxps', 'AdhereRViz', 'aIc', 'ajv', 'AlleleShift', 'almanac', 'alphashape3d', 'amadeus', 'Anthropometry', 'AntMAN', 'APCalign', 'apcf', 'aPCoA', 'apisensr', 'Apollonius', 'appeears', 'AQEval', 'AquaBEHER', 'arakno', 'arcgisgeocode', 'arcgislayers', 'archeoViz', 'archive', 'arcpbf', 'areal', 'arealDB', 'aroma.affymetrix', 'aroma.cn', 'aroma.core', 'Arothron', 'ARPALData', 'arrangements', 'artfima', 'ARUtools', 'asciicast', 'atakrig', 'atom4R', 'atpolR', 'audubon', 'AurieLSHGaussian', 'autostats', 'av', 'AVGAS', 'aws', 'aws.wrfsmn', 'AZIAD', 'babelmixr2', 'badgen', 'baguette', 'bamm', 'bangladesh', 'base64', 'basemaps', 'basf', 'basifoR', 'bate', 'BAwiR', 'BayesfMRI', 'BayesOrdDesign', 'BayesVarSel', 'BayesXsrc', 'BBEST', 'bbl', 'bcROCsurface', 'bdl', 'BeeBDC', 'behaviorchange', 'bfboinet', 'bfsMaps', 'BIEN', 'bigDM', 'bigGP', 'bigrquerystorage', 'bioclim', 'biocompute', 'BIOMASS', 'biomod2', 'biopixR', 'biosensors.usc', 'BioTIMEr', 'biplotbootGUI', 'BiplotGUI', 'birdring', 'birdscanR', 'bispdep', 'bivgeom', 'bivpois', 'blackbox', 'blackmarbler', 'blatr', 'blockCV', 'bluebike', 'bmstdr', 'BNSP', 'BoolFilter', 'brickster', 'brsim', 'BRugs', 'C50', 'CAinterprTools', 'calmate', 'CaseBasedReasoning', 'cbl', 'ClickHouseHTTP', 'clrng', 'CTRing', 'dartR', 'dartR.base', 'dartR.captive', 'dartR.popgen', 'dartR.sexlinked', 'dartR.sim', 'dartR.spatial', 'DGP4LCF', 'diffdfs', 'diffeRenTES', 'disk.frame', 'DominoDataR', 'doMPI', 'DoubleML', 'dpkg', 'ebmc', 'ecdata', 'EFAfactors', 'enerscape', 'epidm', 'EthSEQ', 'excel.link', 'facmodTS', 'fangs', 'fingerPro', 'fmf', 'foundry'); pkgs = setdiff(pkgs, c('RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'compareGroups', 'pls', 'SNPassoc', 'spdep', 'surveillance')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))" ### Manual pkg builds # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # RInno: Windows-only # skedastic: waiting for ROI.plugin.qpoases (https://gitlab.com/roigrp/solver/ROI.plugin.qpoases/-/issues/1) # rswipl: ccache issues: https://github.com/mgondan/rswipl/issues/3 -> solved # Rpoppler: https://github.com/rstudio/r-system-requirements/pull/179/ # ROracle: sysdep missing -> create rule # ROI.plugin.qpoases: https://gitlab.com/roigrp/solver/ROI.plugin.qpoases/-/issues/1 # ROI.plugin.cplex: checking for cplex... no -> requires propriatary software IBM Cplex # RmecabKo: fatal error: mecab.h: No such file or directory # rmarchingcubes: error: narrowing conversion of '-1' from 'int' to 'char' [-Wnarrowing] -> https://github.com/shwilks/rmarchingcubes/issues/3 # RcppMeCab: /bin/bash: line 2: mecab-config: command not found -> https://github.com/rstudio/r-system-requirements/pull/180 # Rcplex: checking for cplex... no -> requires propriatary software IBM Cplex # Rblpapi: Unknown architecture: aarch64. Exiting. -> https://github.com/Rblp/Rblpapi/issues/399 # Rbeast: aarch64 issue -> https://github.com/zhaokg/Rbeast/issues/29 # ravetools: checking for FFTW... configure: error: Package requirements (fftw3) were not met: -> fftw3 rule needed # Racmacs -> rmarchingcubes # minic: /usr/include/c++/13/bits/stl_algo.h:5805:5: note: template argument deduction/substitution failed: # KSgeneral -> aligned_mem.h:6:10: fatal error: mm_malloc.h: No such file or directory -> https://github.com/d-dimitrova/KSgeneral/issues/1 # gpuR -> /usr/bin/ld: cannot find -lOpenCL: No such file or directory -> no GPU avail # clrng -> gpuR # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2 # filters: -> email sent # magickGUI, biplotbootGUI # ymd (alpine, voi) # tfrmtbuilder -> V8 (alpine) # Rcmdr (alpine) # readstata13 (alpine) # - xvfb-run R -q -e 'options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c( "RcmdrPlugin.orloca", "RcmdrPlugin.PcaRobust", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.ROC", "RcmdrPlugin.sos" , "RcmdrPlugin.survival", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.TeachStat", "RcmdrPlugin.temis", "RcmdrPlugin.UCA", "RcmdrPlugin.WorldFlora", "streamDAG", "stan4bart", "snplinkage", "saeHB.panel.beta", "rTwig", "rswipl", "RPointCloud", "rPDBapi", "rolog", "rmcfs", "rjags", "ResultModelManager", "RcppCWB", "RcmdrPlugin.WorldFlora", "RcmdrPlugin.UCA", "RcmdrPlugin.temis", "RcmdrPlugin.TeachStat", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.survival", "RcmdrPlugin.sos", "RcmdrPlugin.ROC", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.PcaRobust", "RclusTool", "Rbeast", "rayrender", "quanteda.textmodels", "polmineR", "plotBart", "NlinTS", "ndtv", "overtureR", "mathml", "magickGUI", "lgpr", "KappaGUI", "historicalborrow", "GSODR", "GRIDCOPULA", "googleAnalyticsR", "fluidsynth", "EventDetectGUI", "evalITR", "EBcoBART", "deeptrafo", "dbarts", "CRE", "countSTAR", "bartMan", "bartCause", "altmeta", "EthSEQ", "dartR.spatial", "dartR.sim", "gwid", "Mega2R", "priorCON", "prior3D", "MCARtest", "designmatch", "highs", "ROI.plugin.highs", "GPCMlasso"); library(bincraftR); options(progressr.enable = TRUE); foo = lapply(pkgs, function(x) build_binary_package(x, debug = FALSE, force = TRUE, platform = "arm64"))' backend_options: kubernetes: resources: requests: memory: 5Gi cpu: 1000m limits: memory: 20Gi cpu: 2000m nodeSelector: kubernetes.io/arch: arm64 node.kubernetes.io/instance-type: cax41 tolerations: - key: 'CI' operator: 'Equal' value: 'true' effect: 'NoSchedule' - name: 'ntfy' image: binwiederhier/ntfy:v2.11.0 when: - status: [failure] environment: NTFY_TOKEN: from_secret: ntfy_token commands: | BUILD_INDEX=$(cat build_index.txt) ntfy publish --tags=no_entry_sign --token $NTFY_TOKEN -t "Run '${CI_REPO}' failed at $BUILD_INDEX" --click="${CI_PIPELINE_URL}" --actions="view, Open build, ${CI_PIPELINE_URL}, clear=true;" ntfy.devxy.io/ci-builds Workflow: ${CI_WORKFLOW_NAME} Commit message: ${CI_COMMIT_MESSAGE} Commit Author: ${CI_COMMIT_AUTHOR}