### Required extra vars # ARCH (amd64) # OS (alpine) # OS_VERSION (3.22) # R_VERSION (4.5.3) # echo "c('RInno','KeyboardSimulator','R2PPT','RWinEdt','blatr','excel.link','spectrino','taskscheduleR','MDSGUI','BiplotGUI','R2wd','rFUSION','MediaNews','doBy','IDPmisc','frailtypack','afex','FrF2','DoE.base','agricolae','doFuture','fscaret','PHYLOGR','seewave','pls','relaimpo','geepack','gggenes','NPCirc','repmis','PNDSIBGE','lidR','poismf','neonstore','MachineShop','mvst','MacBehaviour','mcmcderive','RGIFT','KnowBR','netmeta','spdep','sf','Rfast','compareGroups','ff','GsymPoint','RcppDynProg','comtradr','RcppDynProg','FD','PearsonDS','DCluster','gRc','mixlm','geospt','fdth','ffmanova','fiery','ffscrapr','cold','fiery','RcmdrPlugin.DoE','RcmdrPlugin.NMBU')" | base64 # crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.22 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --var SKIP_PKGS=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 --log-level=info 7 # crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --log-level=info 5 # crow pipeline create --var ARCH=arm64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5 when: - event: manual evaluate: 'task == "build-all-arm64"' skip_clone: true labels: agent: gaia matrix: include: # - SPLIT_INTO: 5 # SPLIT_INDEX: 1 # BACKEND: kubernetes # - SPLIT_INTO: 5 # SPLIT_INDEX: 2 # BACKEND: kubernetes # - SPLIT_INTO: 5 # SPLIT_INDEX: 3 # BACKEND: kubernetes # - SPLIT_INTO: 5 # SPLIT_INDEX: 4 # BACKEND: kubernetes # - SPLIT_INTO: 5 # SPLIT_INDEX: 5 # BACKEND: kubernetes - SPLIT_INTO: 4 SPLIT_INDEX: 1 BACKEND: docker - SPLIT_INTO: 4 SPLIT_INDEX: 2 BACKEND: docker - SPLIT_INTO: 4 SPLIT_INDEX: 3 BACKEND: docker - SPLIT_INTO: 4 SPLIT_INDEX: 4 BACKEND: docker # - SPLIT_INTO: 5 # SPLIT_INDEX: 5 # BACKEND: docker depends_on: - build-all-versions-install-deps-arm64 steps: - name: 'Build binaries' image: "reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}" pull: true environment: RED_HAT_DEV_PW: from_secret: RED_HAT_DEV_PW B2_S3_ACCESS_KEY: from_secret: B2_S3_ACCESS_KEY B2_S3_SECRET_KEY: from_secret: B2_S3_SECRET_KEY PGPASS: from_secret: PGPASS REPO_RO_TOKEN: from_secret: REPO_RO_TOKEN GITHUB_PAT: from_secret: GITHUB_PAT # normal env vars GIT_USER: pat-s # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs CCACHE_DIR: /mnt/cache/ccache NCPUS: 2 volumes: - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/${R_VERSION}/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1 # archive missed packages - /opt/R/${R_VERSION}/bin/R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)" backend_options: docker: resources: requests: memory: 5Gi cpu: 1000m limits: memory: 20Gi cpu: 2000m kubernetes: resources: requests: memory: 5Gi cpu: 1000m limits: memory: 20Gi cpu: 2000m nodeSelector: kubernetes.io/arch: ${ARCH} node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE} tolerations: - key: 'CI' operator: 'Equal' value: 'true' effect: 'NoSchedule'