when: event: [push, manual] # matrix: # include: # - PLATFORM: rhel-9 # PLATFORM_ID: el9 # - PLATFORM: centos-8 # PLATFORM_ID: el8 # - PLATFORM: ubuntu-2204 # PLATFORM_ID: 2204 # - PLATFORM: ubuntu-2404 # PLATFORM_ID: 2404 # - PLATFORM: opensuse-155 # PLATFORM_ID: suse155 steps: - name: Build secrets: [red_hat_dev_pw, aws_access_key_id, aws_secret_access_key, pgpass, git_ro_token] image: docker.io/pats22/arm-binaries-r-ubi9 pull: true # to ensure the PACKAGES upload step is being executed failure: ignore environment: GIT_USER: pat-s # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs volumes: - arm-binaries-r-dep-cache-rhel9:/mnt/cache commands: # download latest package version (avoid having to rebuild image every time) # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/arm64-r-binaries.git && cd arm64-r-binaries - rm -rf /mnt/cache/R-pkgs/00LOCK-arm64-r-binaries - R -q -e 'install.packages(".", repos = NULL, quiet = FALSE); packageVersion("rBinaries")' # manually install some packages into the cache so that some builds don't fail # Hmisc -> ABCanalysis # - R -q -e 'pak::pak("Hmisc")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/binaries - R -q -e 'options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = "error"); pkgs = tools::CRAN_package_db()[[1]][7:10]; library(rBinaries); future::plan("multisession", workers = 4, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE))' backend_options: kubernetes: resources: requests: memory: 2000Mi cpu: 2000m limits: memory: 6000Mi cpu: 4050m nodeSelector: kubernetes.io/arch: 'arm64' # - name: Sleep # image: alpine:3.20 # commands: sleep 10 - name: Upload PACKAGES files secrets: [red_hat_dev_pw, aws_access_key_id, aws_secret_access_key, pgpass, git_ro_token] image: docker.io/pats22/arm-binaries-r-ubi9 pull: true environment: GIT_USER: pat-s # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs volumes: - arm-binaries-r-dep-cache-rhel9:/mnt/cache commands: # download latest package version (avoid having to rebuild image every time) # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/arm64-r-binaries.git && cd arm64-r-binaries - R -q -e 'install.packages(".", repos = NULL, quiet = TRUE); packageVersion("rBinaries")' - R -q -e 'options(crayon.enabled = TRUE); library(rBinaries); upload_package_index()' - R -q -e 'files = list.files("/mnt/cache/binaries/", include.dirs = FALSE, full.names = TRUE, recursive = TRUE); foo = file.remove(files)' backend_options: kubernetes: resources: requests: memory: 300Mi cpu: 0m limits: memory: 500Mi cpu: 1000m nodeSelector: kubernetes.io/arch: 'arm64'