FROM ubuntu:jammy-20240808

ENV PATH=/opt/R/4.4.1/bin:$PATH
ENV TZ="Europe/Berlin"

RUN apt update && apt install -y --no-install-recommends gdebi-core g++ gfortran libbz2-dev libblas-dev libicu-dev liblapack-dev liblzma-dev libpaper-utils libpcre2-dev libtcl8.6 libtk8.6 libxt6 unzip zip zlib1g-dev libpcre3-dev libopenblas-dev curl ca-certificates make ccache htop

### CUSTOM DEPENDENCIES 
# These usually are not packaged in OS repositories and need to be installed from source
# - JAGS (needed for runjags which itself is again a dependency of many packages)
RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..

### INSTALL R
RUN curl -O https://devxy-rbuilds.s3.eu-central-2.amazonaws.com/2204/r-4.4.1_1_arm64.deb
RUN gdebi -n -qq r-4.4.1_1_arm64.deb && rm r-4.4.1_1_arm64.deb
RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'

COPY . .
RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE, PKG_SYSREQS_PLATFORM = "ubuntu-24.04"); pak::pak()'
RUN rm -rf arm-binaries-r

CMD ["/bin/bash"]