when: - event: [cron] cron: process-cran-updates-alpine-322-amd64 - event: manual evaluate: 'process_cran_updates == "all"' - event: manual evaluate: 'process_cran_updates == "alpine-322-amd64"' skip_clone: true labels: agent: artemis steps: - name: 'Processing Updates' image: reg.devxy.io/rpkgs/build-env-alpine:3.22 pull: true environment: RED_HAT_DEV_PW: from_secret: RED_HAT_DEV_PW B2_S3_ACCESS_KEY: from_secret: B2_S3_ACCESS_KEY B2_S3_SECRET_KEY: from_secret: B2_S3_SECRET_KEY PGPASS: from_secret: PGPASS REPO_RO_TOKEN: from_secret: REPO_RO_TOKEN GITHUB_PAT: from_secret: GITHUB_PAT # normal env vars GIT_USER: pat-s NTFY_SERVER: from_secret: NTFY_SERVER NTFY_TOPIC: from_secret: NTFY_TOPIC NTFY_AUTH: TRUE NTFY_PASSWORD: from_secret: ntfy_token # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs R_VERSION: 4.5.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: alpine-322 ARCH: amd64 NCPUS: 2 STRATEGY: sequential INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3) # volumes: # - amd64-binaries-r-dep-cache-alpine-322:/mnt/cache commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.1") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.1")' - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: requests: memory: 5Gi cpu: 3000m limits: memory: 18Gi cpu: 3000m nodeSelector: kubernetes.io/arch: amd64 node.kubernetes.io/instance-type: AX42 tolerations: - key: 'CI' operator: 'Equal' value: 'true' effect: 'NoSchedule' - name: Purge CDN cache image: reg.devxy.io/docker.io/library/alpine:3.23 environment: BUNNYNET_API_KEY: from_secret: BUNNYNET_API_KEY SUBDOMAIN1: 'cran.devxy.io' SUBDOMAIN2: 'cran.allianceswisspass.devxy.io' SUBDOMAIN3: 'cran.rpkgs.com' OS_ID: alpine322 ARCH: amd64 commands: - apk add --no-cache -q bash curl - bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"