refactor(ci): use multi-R-version images across workflows #70
4 changed files with 12 additions and 12 deletions
refactor(ci): use multi-R-version images in build-all-versions workflows
Drop -${R_VERSION} from the image tag and invoke R/Rscript via the
explicit /opt/R/${R_VERSION}/bin/ path.
commit
6403ad602f
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@ -39,7 +39,7 @@ depends_on:
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steps:
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- name: 'Build binaries'
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image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION}
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image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}
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pull: true
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environment:
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RED_HAT_DEV_PW:
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@ -69,9 +69,9 @@ steps:
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# Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'rFUSION', 'MediaNews'
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# pkgs = readRDS('/mnt/cache/pkgs_amd64.rds');
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- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
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- $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1
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- $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/${R_VERSION}/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1
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# archive missed packages
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- R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)"
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- /opt/R/${R_VERSION}/bin/R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)"
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backend_options:
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docker:
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resources:
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@ -54,7 +54,7 @@ depends_on:
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steps:
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- name: 'Build binaries'
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image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION}
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image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}
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pull: true
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environment:
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RED_HAT_DEV_PW:
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@ -82,9 +82,9 @@ steps:
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
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- $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1
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- $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/${R_VERSION}/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1
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# archive missed packages
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- R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)"
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- /opt/R/${R_VERSION}/bin/R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)"
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backend_options:
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docker:
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resources:
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@ -10,7 +10,7 @@ labels:
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steps:
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- name: 'Install deps and bincraft'
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image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION}
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image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}
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pull: true
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environment:
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REPO_RO_TOKEN:
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@ -34,8 +34,8 @@ steps:
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft
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- R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")'
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- R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s package versions to build', nrow(pkgs))"
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- /opt/R/${R_VERSION}/bin/R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")'
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- /opt/R/${R_VERSION}/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s package versions to build', nrow(pkgs))"
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backend_options:
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docker:
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resources:
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@ -9,7 +9,7 @@ labels:
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steps:
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- name: 'Install deps and bincraft'
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image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION}
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image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}
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pull: true
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environment:
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REPO_RO_TOKEN:
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@ -33,8 +33,8 @@ steps:
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft
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- R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")'
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- R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s package versions to build', nrow(pkgs))"
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- /opt/R/${R_VERSION}/bin/R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")'
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- /opt/R/${R_VERSION}/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s package versions to build', nrow(pkgs))"
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backend_options:
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docker:
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resources:
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