Unclassified build failures (needs signatures) (#115) #123

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opened 2026-07-15 07:53:22 +00:00 by pat-s · 0 comments

pat-s commented 2026-07-15 07:53:22 +00:00

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Generated 2026-08-07 16:33:28 from single_builds failures.

Failures the classifier could not auto-propose a fix for.
Each unclassified group is a candidate for a new signature in local/failing-builds-classify.R; the blocked groups clear once the named dependency builds.

Blocked on a dependency

• RcppParallel: 895 dependent(s) (e.g. ACEsimFit, ActiveLearning4SPM, AdaptGauss, AlignLV, AovBay, AssumpSure, AuxSurvey, BANAM, BCEA, BFpack, BGGM, BGVAR, BIDistances, BINtools, BMIselect, ...)
• sf: 128 dependent(s) (e.g. BioTIMEr, BrazilCrime, CARBayes, CARBayesST, CARBayesdata, CAST, CDCPLACES, CIMTx, ClimMobTools, ColOpenData, CommEcol, Compind, DCluster, DClusterm, DEPONS2R, ...)
• rstan: 88 dependent(s) (e.g. BFpack, BayesERtools, GMLTM, PStrata, PVAClone, PoolTestR, PosteriorBootstrap, ProbBreed, R2D2ordinal, RBesT, RStanTVA, RegDDM, Rlgt, RoBTT, Robyn, ...)
• Rfast: 33 dependent(s) (e.g. CICA, ChemoSpec, Directional, EGAnet, NNS, NetworkToolbox, OPI, QFASA, Quartet, Rnmr1D, SMOTEWB, SteppedPower, TestDimorph, TreeSearch, VoxR, ...)
• Deriv: 32 dependent(s) (e.g. BAwiR, DIDmultiplegtDYN, EFA.dimensions, FastJM, OptSurvCutR, RESI, SPARTAAS, SelectSim, apollo, baRulho, clinpubr, clmplus, colleyRstats, ctsmTMB, dtametaTMB, ...)
• DescTools: 30 dependent(s) (e.g. AntibodyTiters, DGEAR, FuzzyImputationTest, HLAtools, MRMCbinary, MatchingPursuit, ProAE, Sequential, SocialFacts, TipDatingBeast, clinpubr, dad, drugprepr, geosimilarity, ggstatsplot, ...)
• clarabel: 27 dependent(s) (e.g. BsplineQuantReg, CVXR, ClimMobTools, DebiasInfer, EGAnet, HonestDiD, ROI.plugin.clarabel, Rdimtools, RobustIV, T4transport, WRI, cdcatR, cdmTools, cheem, filling, ...)
• Rglpk: 22 dependent(s) (e.g. LPmerge, MSCMT, OTrecod, PortfolioOptim, ProjectManagement, cosso, did2s, eatATA, fPortfolio, geocausal, hdme, lpda, modopt.matlab, multinomineq, natstrat, ...)
• xgboost: 18 dependent(s) (e.g. DSWE, FLAME, NFLSimulatoR, TidyDensity, bigsnpr, biomod2, cpfa, fastrmodels, fdm2id, gbts, glmnetr, healthyR.ai, latentFactoR, personalized, predhy, ...)
• rxode2ll: 12 dependent(s) (e.g. admixr2, monolix2rx, nlmixr2, nlmixr2auto, nlmixr2autoinit, nlmixr2est, nlmixr2extra, nlmixr2lib, nlmixr2plot, nlmixr2rpt, nlmixr2targets, nonmem2rx)
• readstata13: 7 dependent(s) (e.g. BiodiversityR, HH, Rcmdr, dlookr, granova, pivmet, troopdata)
• RTMB: 7 dependent(s) (e.g. BayesRTMB, LaMa, RTMBdist, ctsmTMB, dsem, multiSA, tinyVAST)
• pbdZMQ: 4 dependent(s) (e.g. lilikoi, mappeR, netgsa, rpymat)
• aricode: 4 dependent(s) (e.g. MCseqReplic, SISIR, missSBM, shinySbm)
• gdsfmt: 3 dependent(s) (e.g. GMMAT, OmicKriging, dartRverse)
• rms: 3 dependent(s) (e.g. autoReg, landmaRk, pammtools)
• RcppSimdJson: 3 dependent(s) (e.g. arcgislayers, arcgisrouting, arcgisutils)
• devEMF: 3 dependent(s) (e.g. export, rrtable, webr)
• dbarts: 3 dependent(s) (e.g. BCEA, evalITR, tmle)
• rhdf5: 3 dependent(s) (e.g. DFD, DRviaSPCN, chem16S)
• mlpack: 2 dependent(s) (e.g. text2map, wflo)
• BayesXsrc: 2 dependent(s) (e.g. R2BayesX, vibass)
• topicmodels: 2 dependent(s) (e.g. aifeducation, textmineR)
• terrainmeshr: 2 dependent(s) (e.g. PoweREST, rayshader)
• RcppAlgos: 2 dependent(s) (e.g. STraTUS, mvSUSY)
• lpsymphony: 2 dependent(s) (e.g. DGEobj.utils, TestDesign)
• ridge: 2 dependent(s) (e.g. imputeR, omicwas)
• qlcal: 2 dependent(s) (e.g. FinanceGraphs, alphavantagepf)
• blosc: 2 dependent(s) (e.g. geozarr, zarr)
• lwgeom: 2 dependent(s) (e.g. robis, truchet)
• IsingSampler: 2 dependent(s) (e.g. bootnet, psychonetrics)
• BH: 2 dependent(s) (e.g. clarify, afthd)
• GO.db: 2 dependent(s) (e.g. DFD, cinaR)
• RcppCWB: 1 dependent(s) (e.g. polmineR)
• bgw: 1 dependent(s) (e.g. apollo)
• mvabund: 1 dependent(s) (e.g. ecostats)
• libstable4u: 1 dependent(s) (e.g. mvpd)
• kernreg: 1 dependent(s) (e.g. kernda)
• salso: 1 dependent(s) (e.g. batchmix)
• Delaporte: 1 dependent(s) (e.g. modelSSE)
• twdtw: 1 dependent(s) (e.g. rasterdiv)
• affxparser: 1 dependent(s) (e.g. aroma.apd)
• bluster: 1 dependent(s) (e.g. Canek)
• LMMsolver: 1 dependent(s) (e.g. statgenHTP)
• KSgeneral: 1 dependent(s) (e.g. HausdorffGoF)
• hetGP: 1 dependent(s) (e.g. GEMSS)
• seqHMM: 1 dependent(s) (e.g. DBHC)
• GENLIB: 1 dependent(s) (e.g. optiSel)
• imager: 1 dependent(s) (e.g. heatmapbehavior)
• leidenAlg: 1 dependent(s) (e.g. nda)
• geojsonsf: 1 dependent(s) (e.g. bdl)
• torch: 1 dependent(s) (e.g. shrinkGPR)
• later: 1 dependent(s) (e.g. webshot2)
• bayesm: 1 dependent(s) (e.g. BaM)
• rpf: 1 dependent(s) (e.g. tabledown)
• BiocSingular: 1 dependent(s) (e.g. DRviaSPCN)
• BoomSpikeSlab: 1 dependent(s) (e.g. bsts)
• gdalraster: 1 dependent(s) (e.g. FIESTAutils)
• RBGL: 1 dependent(s) (e.g. archeofrag)
• glmnet: 1 dependent(s) (e.g. changepoints)
• terra: 1 dependent(s) (e.g. ClimaRep)
• ggiraph: 1 dependent(s) (e.g. PieGlyph)
• BBmisc: 1 dependent(s) (e.g. dataquieR)
• rolog: 1 dependent(s) (e.g. mathml)
• diffobj: 1 dependent(s) (e.g. catsim)
• DT: 1 dependent(s) (e.g. ASRgenomics)
• nloptr: 1 dependent(s) (e.g. ARDL)
• RcppEigen: 1 dependent(s) (e.g. BetterReg)
• regtools: 1 dependent(s) (e.g. cdparcoord)
• SparseM: 1 dependent(s) (e.g. bayMDS)
• stochvol: 1 dependent(s) (e.g. bayesianVARs)
• vegan: 1 dependent(s) (e.g. bootPLS)
• VGAM: 1 dependent(s) (e.g. bootImpute)
• RcppArmadillo: 1 dependent(s) (e.g. Arothron)

Unclassified failures (1281 groups, 834685 builds)

384236 builds / 6250 pkg(s)

Fingerprint: uncommon/unspecific error during build
Packages: AATtools, ABCanalysis, ACNE, ACTCD, ADAPTS, AER, AGD, AGPRIS, AHMbook, AICcmodavg, AIUQ, AIscreenR, ALDqr, ALS, AMISforInfectiousDiseases, ...
Platforms: alpine-320, alpine-321, alpine-322, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404

233108 builds / 3967 pkg(s)

Fingerprint: error trying to initiate pkgbuild - likely a non-valid r package structure. full error: error in c("(function (command = null, args = character(), error_on_status = true, ", : ! system comma...
Packages: ACNE, AGD, AGPRIS, AHMbook, AICcmodavg, ALS, AMR, APackOfTheClones, AQEval, ARDECO, ARDL, ASRgenomics, AcceptanceSampling, Achilles, AdaptGauss, ...
Platforms: alpine-320, alpine-321, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404

93838 builds / 7563 pkg(s)

Fingerprint: unspecific error during build
Packages: AATtools, ABACUS, ABC.RAP, ABCDscores, ABCanalysis, ABCoptim, ABHgenotypeR, ABM, ABPS, ABRSQOL, ABSurvTDC, ACDm, ACEP, ACEsimFit, ACNE, ...
Platforms: alpine, alpine-320, alpine-321, alpine-322, alpine-323, alpine-324, redhat, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404

21442 builds / 2507 pkg(s)

Fingerprint: ! subscript out of bounds
Packages: BIFIEsurvey, BIGL, BPM, BPrinStratTTE, BRACE, BRACoD.R, BREADR, BRETIGEA, BRINDA, BRISC, BRL, BRcal, BSDA, BSGW, BSPBSS, ...
Platforms: alpine-320, redhat-8, ubuntu-2204, ubuntu-2404

13153 builds / 957 pkg(s)

Fingerprint: error trying to initiate pkgbuild - likely a non-valid r package structure. full error: error: could not find tools necessary to compile a package
Packages: BAS, BASS, BBmisc, BCBCSF, BCClong, BCEE, BDgraph, BEDMatrix, BEKKs, BET, BFpack, BGData, BGGM, BGLR, BGVAR, ...
Platforms: redhat-8, redhat-9, ubuntu-2204, ubuntu-2404

13008 builds / 1747 pkg(s)

Fingerprint: likely a non-valid r package structure. full error: error in c("(function (command = null, args = character(), error_on_status = true, ", : ! system command 'r' failed
Packages: ADMM, ANN2, ARCokrig, ASV, ATAforecasting, ATNr, AddiVortes, AdmixPoly, AlgDesign, Amelia, AnalyzeFMRI, Aoptbdtvc, ArDec, BACCO, BAMBI, ...
Platforms: alpine-321, alpine-322, alpine-323, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

5268 builds / 115 pkg(s)

Fingerprint: * rgdal: can't find package called rgdal.
Packages: AGPRIS, CARBayes, CARBayesST, COVID19, CoastlineFD, CropScapeR, DMMF, EmissV, ExposR, FIESTA, FIESTAutils, GSODR, HurreconR, ISRaD, LPDynR, ...
Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

4532 builds / 1167 pkg(s)

Fingerprint: ! system command 'sh' failed
Packages: APackOfTheClones, AQEval, Achilles, AeRobiology, AgroTech, AquaBEHER, ArchaeoPhases, Arothron, AtmChile, AurieLSHGaussian, BANAM, BASS, BASiNET, BAT, BAwiR, ...
Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

4314 builds / 738 pkg(s)

Fingerprint: call pkgbuild::check_build_tools(debug = true) to diagnose the problem.
Packages: BASS, BASiNET, BAT, BBEST, BCA1SG, BCClong, BCDAG, BCEA, BCEE, BCHM, BDEsize, BDWreg, BDgraph, BEACH, BED, ...
Platforms: redhat-8, redhat-9, ubuntu-2204

3416 builds / 39 pkg(s)

Fingerprint: * maptools: can't find package called maptools.
Packages: BayesX, DRHotNet, EMbC, GWmodel, MapGAM, OpenStreetMap, SUMMER, SWMPr, SpatialEpi, StreamMetabolism, ausplotsR, birdscanR, car, cmsaf, cmsafvis, ...
Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

2891 builds / 387 pkg(s)

Fingerprint: configure: error: gdal-config not found or not executable.
Packages: AGPRIS, AHMbook, AQEval, Argentum, Arothron, AtlasMaker, BAT, BDWreg, BFS, BayesX, BrazilCrime, CARBayes, CARBayesST, CARBayesdata, CAST, ...
Platforms: alpine-320, alpine-324

2316 builds / 60 pkg(s)

Fingerprint: * rgeos: can't find package called rgeos.
Packages: CoordinateCleaner, DivE, EthSEQ, ForestGapR, GeNetIt, GeoAdjust, GeoFIS, HDSpatialScan, MBNMAdose, MTA, NetLogoR, RStoolbox, Rtrack, SeuratObject, SimSurvey, ...
Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

1231 builds / 32 pkg(s)

Fingerprint: * rgeos: can't find package called rgdal, rgeos.
Packages: CCAMLRGIS, DEPONS2R, ExtractTrainData, GInSARCorW, HDSpatialScan, MazamaSpatialUtils, RavenR, ReadDIM, SegEnvIneq, ShapePattern, birdring, ecochange, enerscape, geodiv, ggOceanMaps, ...
Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

1060 builds / 34 pkg(s)

Fingerprint: * spatstat.core: can't find package called spatstat.core.
Packages: ETAS, IDSpatialStats, Seurat, SpatEntropy, SpatialVx, TCIU, binspp, dbmss, ecespa, gateR, globalKinhom, hht, idar, kernstadapt, lacunaritycovariance, ...
Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

835 builds / 128 pkg(s)

Fingerprint: gdal.cpp:<n>:9: [<n>;31merror: 'ret' was not declared in this scope
Packages: BioTIMEr, BrazilCrime, CARBayes, CARBayesST, CARBayesdata, CAST, CDCPLACES, CIMTx, ClimMobTools, ColOpenData, CommEcol, Compind, DCluster, DClusterm, DEPONS2R, ...
Platforms: redhat-8

768 builds / 14 pkg(s)

Fingerprint: * rgeos: can't find package called maptools, rgdal, rgeos.
Packages: LabourMarketAreas, RAC, bfsMaps, cartograflow, gbm.auto, lakemorpho, letsR, movecost, pgirmess, plotdap, red, rgbif, stplanr, track2KBA
Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

648 builds / 17 pkg(s)

Fingerprint: * rgeos: can't find package called maptools, rgeos.
Packages: GISTools, SpatialEpi, amt, cartograflow, cartogram, eeptools, envi, geojsonio, incR, itcSegment, lgcp, monographaR, pycno, rKIN, secrlinear, ...
Platforms: alpine-320, alpine-324, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

591 builds / 12 pkg(s)

Fingerprint: * randomfields: can't find package called randomfields.
Packages: AHMbook, IsoriX, LS2Wstat, SpatialExtremes, geoR, georob, geostatsp, spagmix, spatstat, spatsurv, surveyvoi, varycoef
Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

586 builds / 9 pkg(s)

Fingerprint: * assertive: can't find package called assertive.
Packages: CrossClustering, Luminescence, anomaly, beastier, beautier, infer, moderndive, netmhc2pan, vistime
Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

586 builds / 6 pkg(s)

Fingerprint: * modreg: can't find package called modreg.
Packages: car, gbm, lattice, pgam, simpleboot, spatstat
Platforms: alpine-320, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404

572 builds / 32 pkg(s)

Fingerprint: package not found: data. if this package was recently archived from cran, try installing from the cran github mirror: uvr add cran/data@master
Packages: CWT, Familia, GenoTriplo, HAPTRACE, LISTC, MosaiClusteR, PiC, bayesTFR, brpop, camtrapR, cdcanthro, crew, eventPred, exmort, eyeris, ...
Platforms: alpine-322, alpine-323, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

559 builds / 41 pkg(s)

Fingerprint: * deps::<tmp> needs r >= <v>
Packages: CbKST, CoTiMA, EMMAgeo, KMD, KPC, KScorrect, PathwaySpace, Qindex, QuantileGH, RGraphSpace, Rhpc, TFMPvalue, ThreeWay, TukeyGH77, VizModules, ...
Platforms: alpine-322, alpine-323, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

533 builds / 8 pkg(s)

Fingerprint: * dummies: can't find package called dummies.
Packages: SCCS, clustrd, idm, mccca, mvdalab, nomclust, polyreg, regtools
Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

519 builds / 85 pkg(s)

Fingerprint: error loading shared library libglpk.so.<n>: no such file or directory (needed by /mnt/cache/r-pkgs/igraph/libs/igraph.so)
Packages: BSS, BoSSA, CALANGO, Claddis, CorrectOverloadedPeaks, DAISIE, DAISIEprep, DAMOCLES, DDD, DiagrammeR, EGAnet, EnvNJ, EpiModel, FishPhyloMaker, FossilSim, ...
Platforms: alpine-320, alpine-322, alpine-324

513 builds / 181 pkg(s)

Fingerprint: ! path does not exist: <tmp>
Packages: BKPC, CAFT, CCMMR, CITMIC, CTxCC, CVXR, ChemoSpec, ChemoSpec2D, ChemoSpecUtils, ChessGmooG, CodelistGenerator, DescTools, DiceView, EGAnet, ExposR, ...
Platforms: alpine-320, alpine-322, alpine-323, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

512 builds / 51 pkg(s)

Fingerprint: error loading shared library libproj.so.<n>: no such file or directory (needed by /mnt/cache/r-pkgs/terra/libs/terra.so)
Packages: ForestGapR, ForestTools, GCD, GSODR, IsoriX, Luminescence, MBHdesign, MIAmaxent, Mapinguari, MassWateR, MaxentVariableSelection, TemporalModelR, foto, fuzzySim, gde, ...
Platforms: alpine-320, alpine-322, alpine-324

450 builds / 13 pkg(s)

Fingerprint: * rgdal: can't find package called rgeos, rgdal.
Packages: BIEN, CoordinateCleaner, ENMTools, RStoolbox, SpatialPosition, SurfaceTortoise, daymetr, geocmeans, phyloregion, rangeBuilder, raptr, tmap, vein
Platforms: alpine-320, alpine-324, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

436 builds / 107 pkg(s)

Fingerprint: ! could not find function "uint128"
Packages: AGPRIS, AHMbook, ARUtools, AgePopDenom, AirExposure, AirMonitor, Argentum, Athlytics, AtlasMaker, BFS, BIEN, BIOMASS, BOLDconnectR, BSPADATA, BSSoverSpace, ...
Platforms: alpine-323

432 builds / 85 pkg(s)

Fingerprint: expecting '}'
Packages: APCalign, ARDECO, CepReg, ClassificationEnsembles, ClickHouseHTTP, CohortSymmetry, D4TAlink.light, DNAtools, DominoDataR, EZbakR, Eunomia, LogisticEnsembles, NBDCtools, Qval, RWDataPlyr, ...
Platforms: alpine-321, alpine-322, alpine-323, redhat-8, ubuntu-2404

427 builds / 6 pkg(s)

Fingerprint: * sdmtools: can't find package called sdmtools.
Packages: SSDM, Seurat, gazepath, mgc, shazam, trackdem
Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604

(+1251 more group(s) not shown.)

_Generated 2026-08-07 16:33:28 from `single_builds` failures._ Failures the classifier could **not** auto-propose a fix for. Each unclassified group is a candidate for a new signature in `local/failing-builds-classify.R`; the blocked groups clear once the named dependency builds. ## Blocked on a dependency - **RcppParallel**: 895 dependent(s) (e.g. ACEsimFit, ActiveLearning4SPM, AdaptGauss, AlignLV, AovBay, AssumpSure, AuxSurvey, BANAM, BCEA, BFpack, BGGM, BGVAR, BIDistances, BINtools, BMIselect, ...) - **sf**: 128 dependent(s) (e.g. BioTIMEr, BrazilCrime, CARBayes, CARBayesST, CARBayesdata, CAST, CDCPLACES, CIMTx, ClimMobTools, ColOpenData, CommEcol, Compind, DCluster, DClusterm, DEPONS2R, ...) - **rstan**: 88 dependent(s) (e.g. BFpack, BayesERtools, GMLTM, PStrata, PVAClone, PoolTestR, PosteriorBootstrap, ProbBreed, R2D2ordinal, RBesT, RStanTVA, RegDDM, Rlgt, RoBTT, Robyn, ...) - **Rfast**: 33 dependent(s) (e.g. CICA, ChemoSpec, Directional, EGAnet, NNS, NetworkToolbox, OPI, QFASA, Quartet, Rnmr1D, SMOTEWB, SteppedPower, TestDimorph, TreeSearch, VoxR, ...) - **Deriv**: 32 dependent(s) (e.g. BAwiR, DIDmultiplegtDYN, EFA.dimensions, FastJM, OptSurvCutR, RESI, SPARTAAS, SelectSim, apollo, baRulho, clinpubr, clmplus, colleyRstats, ctsmTMB, dtametaTMB, ...) - **DescTools**: 30 dependent(s) (e.g. AntibodyTiters, DGEAR, FuzzyImputationTest, HLAtools, MRMCbinary, MatchingPursuit, ProAE, Sequential, SocialFacts, TipDatingBeast, clinpubr, dad, drugprepr, geosimilarity, ggstatsplot, ...) - **clarabel**: 27 dependent(s) (e.g. BsplineQuantReg, CVXR, ClimMobTools, DebiasInfer, EGAnet, HonestDiD, ROI.plugin.clarabel, Rdimtools, RobustIV, T4transport, WRI, cdcatR, cdmTools, cheem, filling, ...) - **Rglpk**: 22 dependent(s) (e.g. LPmerge, MSCMT, OTrecod, PortfolioOptim, ProjectManagement, cosso, did2s, eatATA, fPortfolio, geocausal, hdme, lpda, modopt.matlab, multinomineq, natstrat, ...) - **xgboost**: 18 dependent(s) (e.g. DSWE, FLAME, NFLSimulatoR, TidyDensity, bigsnpr, biomod2, cpfa, fastrmodels, fdm2id, gbts, glmnetr, healthyR.ai, latentFactoR, personalized, predhy, ...) - **rxode2ll**: 12 dependent(s) (e.g. admixr2, monolix2rx, nlmixr2, nlmixr2auto, nlmixr2autoinit, nlmixr2est, nlmixr2extra, nlmixr2lib, nlmixr2plot, nlmixr2rpt, nlmixr2targets, nonmem2rx) - **readstata13**: 7 dependent(s) (e.g. BiodiversityR, HH, Rcmdr, dlookr, granova, pivmet, troopdata) - **RTMB**: 7 dependent(s) (e.g. BayesRTMB, LaMa, RTMBdist, ctsmTMB, dsem, multiSA, tinyVAST) - **pbdZMQ**: 4 dependent(s) (e.g. lilikoi, mappeR, netgsa, rpymat) - **aricode**: 4 dependent(s) (e.g. MCseqReplic, SISIR, missSBM, shinySbm) - **gdsfmt**: 3 dependent(s) (e.g. GMMAT, OmicKriging, dartRverse) - **rms**: 3 dependent(s) (e.g. autoReg, landmaRk, pammtools) - **RcppSimdJson**: 3 dependent(s) (e.g. arcgislayers, arcgisrouting, arcgisutils) - **devEMF**: 3 dependent(s) (e.g. export, rrtable, webr) - **dbarts**: 3 dependent(s) (e.g. BCEA, evalITR, tmle) - **rhdf5**: 3 dependent(s) (e.g. DFD, DRviaSPCN, chem16S) - **mlpack**: 2 dependent(s) (e.g. text2map, wflo) - **BayesXsrc**: 2 dependent(s) (e.g. R2BayesX, vibass) - **topicmodels**: 2 dependent(s) (e.g. aifeducation, textmineR) - **terrainmeshr**: 2 dependent(s) (e.g. PoweREST, rayshader) - **RcppAlgos**: 2 dependent(s) (e.g. STraTUS, mvSUSY) - **lpsymphony**: 2 dependent(s) (e.g. DGEobj.utils, TestDesign) - **ridge**: 2 dependent(s) (e.g. imputeR, omicwas) - **qlcal**: 2 dependent(s) (e.g. FinanceGraphs, alphavantagepf) - **blosc**: 2 dependent(s) (e.g. geozarr, zarr) - **lwgeom**: 2 dependent(s) (e.g. robis, truchet) - **IsingSampler**: 2 dependent(s) (e.g. bootnet, psychonetrics) - **BH**: 2 dependent(s) (e.g. clarify, afthd) - **GO.db**: 2 dependent(s) (e.g. DFD, cinaR) - **RcppCWB**: 1 dependent(s) (e.g. polmineR) - **bgw**: 1 dependent(s) (e.g. apollo) - **mvabund**: 1 dependent(s) (e.g. ecostats) - **libstable4u**: 1 dependent(s) (e.g. mvpd) - **kernreg**: 1 dependent(s) (e.g. kernda) - **salso**: 1 dependent(s) (e.g. batchmix) - **Delaporte**: 1 dependent(s) (e.g. modelSSE) - **twdtw**: 1 dependent(s) (e.g. rasterdiv) - **affxparser**: 1 dependent(s) (e.g. aroma.apd) - **bluster**: 1 dependent(s) (e.g. Canek) - **LMMsolver**: 1 dependent(s) (e.g. statgenHTP) - **KSgeneral**: 1 dependent(s) (e.g. HausdorffGoF) - **hetGP**: 1 dependent(s) (e.g. GEMSS) - **seqHMM**: 1 dependent(s) (e.g. DBHC) - **GENLIB**: 1 dependent(s) (e.g. optiSel) - **imager**: 1 dependent(s) (e.g. heatmapbehavior) - **leidenAlg**: 1 dependent(s) (e.g. nda) - **geojsonsf**: 1 dependent(s) (e.g. bdl) - **torch**: 1 dependent(s) (e.g. shrinkGPR) - **later**: 1 dependent(s) (e.g. webshot2) - **bayesm**: 1 dependent(s) (e.g. BaM) - **rpf**: 1 dependent(s) (e.g. tabledown) - **BiocSingular**: 1 dependent(s) (e.g. DRviaSPCN) - **BoomSpikeSlab**: 1 dependent(s) (e.g. bsts) - **gdalraster**: 1 dependent(s) (e.g. FIESTAutils) - **RBGL**: 1 dependent(s) (e.g. archeofrag) - **glmnet**: 1 dependent(s) (e.g. changepoints) - **terra**: 1 dependent(s) (e.g. ClimaRep) - **ggiraph**: 1 dependent(s) (e.g. PieGlyph) - **BBmisc**: 1 dependent(s) (e.g. dataquieR) - **rolog**: 1 dependent(s) (e.g. mathml) - **diffobj**: 1 dependent(s) (e.g. catsim) - **DT**: 1 dependent(s) (e.g. ASRgenomics) - **nloptr**: 1 dependent(s) (e.g. ARDL) - **RcppEigen**: 1 dependent(s) (e.g. BetterReg) - **regtools**: 1 dependent(s) (e.g. cdparcoord) - **SparseM**: 1 dependent(s) (e.g. bayMDS) - **stochvol**: 1 dependent(s) (e.g. bayesianVARs) - **vegan**: 1 dependent(s) (e.g. bootPLS) - **VGAM**: 1 dependent(s) (e.g. bootImpute) - **RcppArmadillo**: 1 dependent(s) (e.g. Arothron) ## Unclassified failures (1281 groups, 834685 builds) ### 384236 builds / 6250 pkg(s) Fingerprint: `uncommon/unspecific error during build` Packages: AATtools, ABCanalysis, ACNE, ACTCD, ADAPTS, AER, AGD, AGPRIS, AHMbook, AICcmodavg, AIUQ, AIscreenR, ALDqr, ALS, AMISforInfectiousDiseases, ... Platforms: alpine-320, alpine-321, alpine-322, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404 ### 233108 builds / 3967 pkg(s) Fingerprint: `error trying to initiate pkgbuild - likely a non-valid r package structure. full error: error in c("(function (command = null, args = character(), error_on_status = true, ", : ! system comma...` Packages: ACNE, AGD, AGPRIS, AHMbook, AICcmodavg, ALS, AMR, APackOfTheClones, AQEval, ARDECO, ARDL, ASRgenomics, AcceptanceSampling, Achilles, AdaptGauss, ... Platforms: alpine-320, alpine-321, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404 ### 93838 builds / 7563 pkg(s) Fingerprint: `unspecific error during build` Packages: AATtools, ABACUS, ABC.RAP, ABCDscores, ABCanalysis, ABCoptim, ABHgenotypeR, ABM, ABPS, ABRSQOL, ABSurvTDC, ACDm, ACEP, ACEsimFit, ACNE, ... Platforms: alpine, alpine-320, alpine-321, alpine-322, alpine-323, alpine-324, redhat, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404 ### 21442 builds / 2507 pkg(s) Fingerprint: `! subscript out of bounds` Packages: BIFIEsurvey, BIGL, BPM, BPrinStratTTE, BRACE, BRACoD.R, BREADR, BRETIGEA, BRINDA, BRISC, BRL, BRcal, BSDA, BSGW, BSPBSS, ... Platforms: alpine-320, redhat-8, ubuntu-2204, ubuntu-2404 ### 13153 builds / 957 pkg(s) Fingerprint: `error trying to initiate pkgbuild - likely a non-valid r package structure. full error: error: could not find tools necessary to compile a package` Packages: BAS, BASS, BBmisc, BCBCSF, BCClong, BCEE, BDgraph, BEDMatrix, BEKKs, BET, BFpack, BGData, BGGM, BGLR, BGVAR, ... Platforms: redhat-8, redhat-9, ubuntu-2204, ubuntu-2404 ### 13008 builds / 1747 pkg(s) Fingerprint: `likely a non-valid r package structure. full error: error in c("(function (command = null, args = character(), error_on_status = true, ", : ! system command 'r' failed` Packages: ADMM, ANN2, ARCokrig, ASV, ATAforecasting, ATNr, AddiVortes, AdmixPoly, AlgDesign, Amelia, AnalyzeFMRI, Aoptbdtvc, ArDec, BACCO, BAMBI, ... Platforms: alpine-321, alpine-322, alpine-323, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 5268 builds / 115 pkg(s) Fingerprint: `* rgdal: can't find package called rgdal.` Packages: AGPRIS, CARBayes, CARBayesST, COVID19, CoastlineFD, CropScapeR, DMMF, EmissV, ExposR, FIESTA, FIESTAutils, GSODR, HurreconR, ISRaD, LPDynR, ... Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 4532 builds / 1167 pkg(s) Fingerprint: `! system command 'sh' failed` Packages: APackOfTheClones, AQEval, Achilles, AeRobiology, AgroTech, AquaBEHER, ArchaeoPhases, Arothron, AtmChile, AurieLSHGaussian, BANAM, BASS, BASiNET, BAT, BAwiR, ... Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 4314 builds / 738 pkg(s) Fingerprint: `call `pkgbuild::check_build_tools(debug = true)` to diagnose the problem.` Packages: BASS, BASiNET, BAT, BBEST, BCA1SG, BCClong, BCDAG, BCEA, BCEE, BCHM, BDEsize, BDWreg, BDgraph, BEACH, BED, ... Platforms: redhat-8, redhat-9, ubuntu-2204 ### 3416 builds / 39 pkg(s) Fingerprint: `* maptools: can't find package called maptools.` Packages: BayesX, DRHotNet, EMbC, GWmodel, MapGAM, OpenStreetMap, SUMMER, SWMPr, SpatialEpi, StreamMetabolism, ausplotsR, birdscanR, car, cmsaf, cmsafvis, ... Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 2891 builds / 387 pkg(s) Fingerprint: `configure: error: gdal-config not found or not executable.` Packages: AGPRIS, AHMbook, AQEval, Argentum, Arothron, AtlasMaker, BAT, BDWreg, BFS, BayesX, BrazilCrime, CARBayes, CARBayesST, CARBayesdata, CAST, ... Platforms: alpine-320, alpine-324 ### 2316 builds / 60 pkg(s) Fingerprint: `* rgeos: can't find package called rgeos.` Packages: CoordinateCleaner, DivE, EthSEQ, ForestGapR, GeNetIt, GeoAdjust, GeoFIS, HDSpatialScan, MBNMAdose, MTA, NetLogoR, RStoolbox, Rtrack, SeuratObject, SimSurvey, ... Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 1231 builds / 32 pkg(s) Fingerprint: `* rgeos: can't find package called rgdal, rgeos.` Packages: CCAMLRGIS, DEPONS2R, ExtractTrainData, GInSARCorW, HDSpatialScan, MazamaSpatialUtils, RavenR, ReadDIM, SegEnvIneq, ShapePattern, birdring, ecochange, enerscape, geodiv, ggOceanMaps, ... Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 1060 builds / 34 pkg(s) Fingerprint: `* spatstat.core: can't find package called spatstat.core.` Packages: ETAS, IDSpatialStats, Seurat, SpatEntropy, SpatialVx, TCIU, binspp, dbmss, ecespa, gateR, globalKinhom, hht, idar, kernstadapt, lacunaritycovariance, ... Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 835 builds / 128 pkg(s) Fingerprint: `gdal.cpp:<n>:9: [<n>;31merror: 'ret' was not declared in this scope` Packages: BioTIMEr, BrazilCrime, CARBayes, CARBayesST, CARBayesdata, CAST, CDCPLACES, CIMTx, ClimMobTools, ColOpenData, CommEcol, Compind, DCluster, DClusterm, DEPONS2R, ... Platforms: redhat-8 ### 768 builds / 14 pkg(s) Fingerprint: `* rgeos: can't find package called maptools, rgdal, rgeos.` Packages: LabourMarketAreas, RAC, bfsMaps, cartograflow, gbm.auto, lakemorpho, letsR, movecost, pgirmess, plotdap, red, rgbif, stplanr, track2KBA Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 648 builds / 17 pkg(s) Fingerprint: `* rgeos: can't find package called maptools, rgeos.` Packages: GISTools, SpatialEpi, amt, cartograflow, cartogram, eeptools, envi, geojsonio, incR, itcSegment, lgcp, monographaR, pycno, rKIN, secrlinear, ... Platforms: alpine-320, alpine-324, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 591 builds / 12 pkg(s) Fingerprint: `* randomfields: can't find package called randomfields.` Packages: AHMbook, IsoriX, LS2Wstat, SpatialExtremes, geoR, georob, geostatsp, spagmix, spatstat, spatsurv, surveyvoi, varycoef Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 586 builds / 9 pkg(s) Fingerprint: `* assertive: can't find package called assertive.` Packages: CrossClustering, Luminescence, anomaly, beastier, beautier, infer, moderndive, netmhc2pan, vistime Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 586 builds / 6 pkg(s) Fingerprint: `* modreg: can't find package called modreg.` Packages: car, gbm, lattice, pgam, simpleboot, spatstat Platforms: alpine-320, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404 ### 572 builds / 32 pkg(s) Fingerprint: `package not found: data. if this package was recently archived from cran, try installing from the cran github mirror: uvr add cran/data@master` Packages: CWT, Familia, GenoTriplo, HAPTRACE, LISTC, MosaiClusteR, PiC, bayesTFR, brpop, camtrapR, cdcanthro, crew, eventPred, exmort, eyeris, ... Platforms: alpine-322, alpine-323, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 559 builds / 41 pkg(s) Fingerprint: `* deps::<tmp> needs r >= <v>` Packages: CbKST, CoTiMA, EMMAgeo, KMD, KPC, KScorrect, PathwaySpace, Qindex, QuantileGH, RGraphSpace, Rhpc, TFMPvalue, ThreeWay, TukeyGH77, VizModules, ... Platforms: alpine-322, alpine-323, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 533 builds / 8 pkg(s) Fingerprint: `* dummies: can't find package called dummies.` Packages: SCCS, clustrd, idm, mccca, mvdalab, nomclust, polyreg, regtools Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 519 builds / 85 pkg(s) Fingerprint: `error loading shared library libglpk.so.<n>: no such file or directory (needed by /mnt/cache/r-pkgs/igraph/libs/igraph.so)` Packages: BSS, BoSSA, CALANGO, Claddis, CorrectOverloadedPeaks, DAISIE, DAISIEprep, DAMOCLES, DDD, DiagrammeR, EGAnet, EnvNJ, EpiModel, FishPhyloMaker, FossilSim, ... Platforms: alpine-320, alpine-322, alpine-324 ### 513 builds / 181 pkg(s) Fingerprint: `! path does not exist: <tmp>` Packages: BKPC, CAFT, CCMMR, CITMIC, CTxCC, CVXR, ChemoSpec, ChemoSpec2D, ChemoSpecUtils, ChessGmooG, CodelistGenerator, DescTools, DiceView, EGAnet, ExposR, ... Platforms: alpine-320, alpine-322, alpine-323, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 512 builds / 51 pkg(s) Fingerprint: `error loading shared library libproj.so.<n>: no such file or directory (needed by /mnt/cache/r-pkgs/terra/libs/terra.so)` Packages: ForestGapR, ForestTools, GCD, GSODR, IsoriX, Luminescence, MBHdesign, MIAmaxent, Mapinguari, MassWateR, MaxentVariableSelection, TemporalModelR, foto, fuzzySim, gde, ... Platforms: alpine-320, alpine-322, alpine-324 ### 450 builds / 13 pkg(s) Fingerprint: `* rgdal: can't find package called rgeos, rgdal.` Packages: BIEN, CoordinateCleaner, ENMTools, RStoolbox, SpatialPosition, SurfaceTortoise, daymetr, geocmeans, phyloregion, rangeBuilder, raptr, tmap, vein Platforms: alpine-320, alpine-324, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 ### 436 builds / 107 pkg(s) Fingerprint: `! could not find function "uint128"` Packages: AGPRIS, AHMbook, ARUtools, AgePopDenom, AirExposure, AirMonitor, Argentum, Athlytics, AtlasMaker, BFS, BIEN, BIOMASS, BOLDconnectR, BSPADATA, BSSoverSpace, ... Platforms: alpine-323 ### 432 builds / 85 pkg(s) Fingerprint: `expecting '}'` Packages: APCalign, ARDECO, CepReg, ClassificationEnsembles, ClickHouseHTTP, CohortSymmetry, D4TAlink.light, DNAtools, DominoDataR, EZbakR, Eunomia, LogisticEnsembles, NBDCtools, Qval, RWDataPlyr, ... Platforms: alpine-321, alpine-322, alpine-323, redhat-8, ubuntu-2404 ### 427 builds / 6 pkg(s) Fingerprint: `* sdmtools: can't find package called sdmtools.` Packages: SSDM, Seurat, gazepath, mgc, shazam, trackdem Platforms: alpine-320, alpine-324, redhat-10, redhat-8, redhat-9, ubuntu-2204, ubuntu-2404, ubuntu-2604 _(+1251 more group(s) not shown.)_

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