refactor: collapse cdn.tf pullzones into for_each

bunnynet_pullzone.devxy-r-binaries (cran.devxy.io) and bunnynet_pullzone.cran_rpkgs_com (cran.rpkgs.com) were byte-for-byte identical except for the zone name and hostname. Same for the two pullzone_hostname resources. Use a single local.pullzones map and for_each on both resources, so shared knobs (block_ips, limit_bandwidth, s3_auth_*, ...) only have to be edited once. State migration is handled by moved {} blocks so the existing pullzones get re-addressed under the new for_each keys instead of being destroyed+recreated. Run terraform plan to confirm a zero- change apply before applying.
2026-05-28 15:52:28 +02:00
135 changed files with 3909 additions and 10493 deletions
--- a/.crow/archive-missed-packages.yaml
+++ b/.crow/archive-missed-packages.yaml
@ -6,6 +6,7 @@ when:
  - event: cron
    cron: archive-missed-packages
 matrix:
  include:
    - CODENAME: jammy
@ -24,22 +25,18 @@ matrix:
      ARCH: amd64
    - CODENAME: redhat-9
      ARCH: arm64
-    - CODENAME: redhat-10
+    - CODENAME: alpine321
      ARCH: amd64
-    - CODENAME: redhat-10
+    - CODENAME: alpine321
      ARCH: arm64
    - CODENAME: alpine322
      ARCH: amd64
    - CODENAME: alpine322
      ARCH: arm64
    - CODENAME: alpine323
      ARCH: amd64
    - CODENAME: alpine323
      ARCH: arm64
 steps:
  - name: 'Archive missed packages'
-    image: reg.devxy.io/rpkgs/build-env-alpine:3.24
+    image: reg.devxy.io/rpkgs/build-env-alpine:3.23
    pull: true
    environment:
      RED_HAT_DEV_PW:
@ -58,9 +55,9 @@ steps:
      GIT_USER: pat-s
      R_VERSION: 4.5.3
    commands:
-      - /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
+      - /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0", dependencies = TRUE)'
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
-      - /opt/R/$R_VERSION/bin/R -q -e 'bincraft::process_unarchived_pkgs(Sys.getenv("CODENAME"), Sys.getenv("ARCH"), s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"), workers = 2L)'
+      - /opt/R/$R_VERSION/bin/R -q -e 'bincraft::process_unarchived_pkgs(Sys.getenv("CODENAME"), Sys.getenv("ARCH"), workers = 2L)'
    backend_options:
      kubernetes:
        resources:
--- a/.crow/auto-apply-patches.yaml
+++ b/.crow/auto-apply-patches.yaml
@ -1,76 +0,0 @@
 # Auto-apply registry patches (issue #115, step 3 automation).
 # Classifies `single_builds` failures and, for the top-N auto-proposable
 # candidates by failure volume, writes the registry entries onto the reused
 # `auto/registry-patch-proposals` branch and opens/updates a single PR.
 # Nothing merges: the `trial-build-registry` pipeline is the merge gate, and a
 # human reviews the PR. Novel source diffs / unknown signatures are never
 # proposed. Global across platforms, so a single job -- no matrix.
 #
 # FORGEJO_TOKEN is used for both the branch push and opening the PR (no separate
 # write-scoped secret needed). Register the `auto-apply-patches` cron in the crow
 # UI, or run manually:
 #   crow pipeline create --branch main \
 #     --var auto_apply_patches=true devxy/build-cran-binaries
 #
 # The gate variable is `auto_apply_patches`, named after the pipeline: a manual
 # run instantiates every pipeline in `.crow/`, so one without its own gate runs
 # on *any* manual trigger in this repo. This one pushes a branch and opens a PR,
 # so it must stay off unless it is what was asked for.
 variables:
  auto_apply_patches:
    description: 'Run the auto-patch proposer. Also gates this pipeline.'
    options:
      - 'true'
      - 'false'
    default: 'false'
  patch_limit:
    description: 'Max candidates to propose per run (top by failure volume).'
    default: '10'
 when:
  - event: manual
    evaluate: 'auto_apply_patches == "true"'
  - event: cron
    cron: auto-apply-patches
 skip_clone: true
 labels:
  group: rpkgs-amd64
 steps:
  - name: 'Auto-apply registry patches'
    image: reg.devxy.io/rpkgs/build-env-alpine:3.24
    pull: true
    environment:
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      FORGEJO_TOKEN:
        from_secret: FORGEJO_TOKEN
      GIT_USER: devxy-bot
      GIT_EMAIL: bot@devxy.io
      PATCH_LIMIT: ${patch_limit}
      R_VERSION: 4.5.3
      R_LIBS_USER: /mnt/cache/R-pkgs
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - mkdir -p /mnt/cache/R-pkgs
      - rm -rf /mnt/cache/R-pkgs/00LOCK-*
      - UVR_R_BIN=/opt/R/$R_VERSION/bin/R local/uvr-install.sh RPostgres httr2 jsonlite
      - /opt/R/$R_VERSION/bin/Rscript local/propose-patches.R --open-pr --limit $PATCH_LIMIT
    backend_options:
      kubernetes:
        resources:
          requests:
            memory: 1Gi
            cpu: 2000m
          limits:
            memory: 2Gi
            cpu: 2000m
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'
--- a/.crow/build-all-versions-amd64.yaml
+++ b/.crow/build-all-versions-amd64.yaml
@ -0,0 +1,99 @@
 ### Required extra vars
 # ARCH (amd64)
 # OS (alpine)
 # OS_VERSION (3.22)
 # R_VERSION (4.5.3)
 # crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5
 # crow pipeline create --var ARCH=arm64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5
 # crow pipeline create --var ARCH=amd64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-amd64 --branch=main --log-level=info 5
 when:
  - event: manual
    evaluate: 'task == "build-all-amd64"'
 skip_clone: true
 labels:
  platform: linux/amd64
  agent: artemis
 matrix:
  include:
    - SPLIT_INTO: 4
      SPLIT_INDEX: 1
      BACKEND: kubernetes
    - SPLIT_INTO: 4
      SPLIT_INDEX: 2
      BACKEND: kubernetes
    - SPLIT_INTO: 4
      SPLIT_INDEX: 3
      BACKEND: kubernetes
    - SPLIT_INTO: 4
      SPLIT_INDEX: 4
      BACKEND: kubernetes
    # - SPLIT_INTO: 4
    #   SPLIT_INDEX: 5
    #   BACKEND: kubernetes
 depends_on:
  - build-all-versions-install-deps-amd64
 steps:
  - name: 'Build binaries'
    image: "reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}"
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: ""
      R_LIBS_USER: /mnt/cache/R-pkgs
      CCACHE_DIR: /mnt/cache/ccache
      NCPUS: 2
    volumes:
      - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'rFUSION', 'MediaNews'
      # pkgs = readRDS('/mnt/cache/pkgs_amd64.rds');
      - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
      - $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/$R_VERSION/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1
      # archive missed packages
      - /opt/R/$R_VERSION/bin/R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)"
    backend_options:
      docker:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
          limits:
            memory: 20Gi
            cpu: 2000m
      kubernetes:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
          limits:
            memory: 20Gi
            cpu: 2000m
        nodeSelector:
          kubernetes.io/arch: ${ARCH}
          node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'
--- a/.crow/build-all-versions-arm64.yaml
+++ b/.crow/build-all-versions-arm64.yaml
@ -0,0 +1,112 @@
 ### Required extra vars
 # ARCH (amd64)
 # OS (alpine)
 # OS_VERSION (3.22)
 # R_VERSION (4.5.3)
 # echo "c('RInno','KeyboardSimulator','R2PPT','RWinEdt','blatr','excel.link','spectrino','taskscheduleR','MDSGUI','BiplotGUI','R2wd','rFUSION','MediaNews','doBy','IDPmisc','frailtypack','afex','FrF2','DoE.base','agricolae','doFuture','fscaret','PHYLOGR','seewave','pls','relaimpo','geepack','gggenes','NPCirc','repmis','PNDSIBGE','lidR','poismf','neonstore','MachineShop','mvst','MacBehaviour','mcmcderive','RGIFT','KnowBR','netmeta','spdep','sf','Rfast','compareGroups','ff','GsymPoint','RcppDynProg','comtradr','RcppDynProg','FD','PearsonDS','DCluster','gRc','mixlm','geospt','fdth','ffmanova','fiery','ffscrapr','cold','fiery','RcmdrPlugin.DoE','RcmdrPlugin.NMBU')" | base64
 # crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.22 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --var SKIP_PKGS=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 --log-level=info 7
 # crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --log-level=info 5
 # crow pipeline create --var ARCH=arm64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5
 when:
  - event: manual
    evaluate: 'task == "build-all-arm64"'
 skip_clone: true
 labels:
  agent: gaia
 matrix:
  include:
    # - SPLIT_INTO: 5
    #   SPLIT_INDEX: 1
    #   BACKEND: kubernetes
    # - SPLIT_INTO: 5
    #   SPLIT_INDEX: 2
    #   BACKEND: kubernetes
    # - SPLIT_INTO: 5
    #   SPLIT_INDEX: 3
    #   BACKEND: kubernetes
    # - SPLIT_INTO: 5
    #   SPLIT_INDEX: 4
    #   BACKEND: kubernetes
    # - SPLIT_INTO: 5
    #   SPLIT_INDEX: 5
    #   BACKEND: kubernetes
    - SPLIT_INTO: 4
      SPLIT_INDEX: 1
      BACKEND: docker
    - SPLIT_INTO: 4
      SPLIT_INDEX: 2
      BACKEND: docker
    - SPLIT_INTO: 4
      SPLIT_INDEX: 3
      BACKEND: docker
    - SPLIT_INTO: 4
      SPLIT_INDEX: 4
      BACKEND: docker
    # - SPLIT_INTO: 5
    #   SPLIT_INDEX: 5
    #   BACKEND: docker
 depends_on:
  - build-all-versions-install-deps-arm64
 steps:
  - name: 'Build binaries'
    image: "reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}"
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      CCACHE_DIR: /mnt/cache/ccache
      NCPUS: 2
    volumes:
      - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
      - $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/$R_VERSION/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1
      # archive missed packages
      - /opt/R/$R_VERSION/bin/R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)"
    backend_options:
      docker:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
          limits:
            memory: 20Gi
            cpu: 2000m
      kubernetes:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
          limits:
            memory: 20Gi
            cpu: 2000m
        nodeSelector:
          kubernetes.io/arch: ${ARCH}
          node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'
--- a/.crow/build-all-versions-install-deps-amd64.yaml
+++ b/.crow/build-all-versions-install-deps-amd64.yaml
@ -0,0 +1,57 @@
 when:
  - event: manual
    evaluate: 'task == "build-all-amd64"'
 skip_clone: true
 labels:
  platform: linux/${ARCH}
  agent: artemis
 steps:
  - name: 'Install deps and bincraft'
    image: "reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}"
    pull: true
    environment:
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      CCACHE_DIR: /mnt/cache/ccache
    volumes:
      - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
    commands:
      # one-time full wipe to fix corrupted .so files from previous failed builds
      # - rm -rf /mnt/cache/R-pkgs
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft
      - /opt/R/$R_VERSION/bin/R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")'
      - /opt/R/$R_VERSION/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s package versions to build', nrow(pkgs))"
    backend_options:
      docker:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
      kubernetes:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
        nodeSelector:
          kubernetes.io/arch: ${ARCH}
          node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'
--- a/.crow/build-all-versions-install-deps-arm64.yaml
+++ b/.crow/build-all-versions-install-deps-arm64.yaml
@ -0,0 +1,56 @@
 when:
  - event: manual
    evaluate: 'task == "build-all-arm64"'
 skip_clone: true
 labels:
  agent: gaia
 steps:
  - name: 'Install deps and bincraft'
    image: "reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}"
    pull: true
    environment:
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      CCACHE_DIR: /mnt/cache/ccache
    volumes:
      - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
    commands:
      # one-time full wipe to fix corrupted .so files from previous failed builds
      # - rm -rf /mnt/cache/R-pkgs
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft
      - /opt/R/$R_VERSION/bin/R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")'
      - /opt/R/$R_VERSION/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s package versions to build', nrow(pkgs))"
    backend_options:
      docker:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
      kubernetes:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
        nodeSelector:
          kubernetes.io/arch: ${ARCH}
          node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'
--- a/.crow/build-all-versions-install-deps.yaml
+++ b/.crow/build-all-versions-install-deps.yaml
@ -1,97 +0,0 @@
 # Consolidated install-deps for build-all (both arches in one file).
 # Triggered together with build-all-versions; `target_arch` routes the matrix.
 # Variables are declared so the manual-run form exposes them (crow #1165);
 # they are merged with build-all-versions' identical declarations.
 variables:
  # Gates this pipeline. A manual pipeline creation instantiates every file in
  # .crow/, and a declared default is applied even when the run never passed
  # this variable, so the default must be a value that matches no matrix row.
  target_arch:
    description: 'Architecture to build, or "none" to run nothing.'
    options:
      - none
      - amd64
      - arm64
    default: none
  OS:
    description: 'Base OS image name.'
    options:
      - alpine
      - redhat
      - ubuntu
    default: alpine
  OS_VERSION:
    description: 'OS image tag. Must match OS (alpine: 3.24; redhat: 8/9/10; ubuntu: jammy/noble).'
    options:
      - '3.24'
      - '8'
      - '9'
      - '10'
      - 'jammy'
      - 'noble'
    default: '3.24'
  R_VERSION:
    description: 'Primary R version under /opt/R.'
    options:
      - 4.5.3
      - 4.4.3
    default: 4.5.3
 when:
  - event: manual
    evaluate: 'target_arch == "${ARCH}"'
 skip_clone: true
 labels:
  platform: linux/${ARCH}
  group: rpkgs-${ARCH}
 matrix:
  include:
    - ARCH: amd64
    - ARCH: arm64
 steps:
  - name: 'Install deps and bincraft'
    image: 'reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}'
    pull: true
    environment:
      OTEL_R_TRACES_EXPORTER: none
      OTEL_R_LOGS_EXPORTER: none
      OTEL_R_METRICS_EXPORTER: none
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      R_LIBS_USER: /mnt/cache/R-pkgs
      # Keep uvr's downloads and extracted-package entries on the persistent
      # volume instead of the container-local ~/.uvr default.
      UVR_CACHE_DIR: /mnt/cache/uvr/cache
      UVR_PACKAGES_DIR: /mnt/cache/uvr/packages
      CCACHE_DIR: /mnt/cache/ccache
    volumes:
      - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
    commands:
      # one-time full wipe to fix corrupted .so files from previous failed builds
      # - rm -rf /mnt/cache/R-pkgs
      - mkdir -p /mnt/cache/uvr/cache /mnt/cache/uvr/packages /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      # Pin the same bincraft version the build steps use, so the precomputed
      # snapshot and the per-agent library stay consistent across the pipeline.
      - /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
      - UVR_R_BIN=/opt/R/$R_VERSION/bin/R local/uvr-install.sh RPostgres s3fs data.table future jsonlite
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      - /opt/R/$R_VERSION/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); saveRDS(pkgs[r_minor_sensitive == TRUE], '/mnt/cache/packages/r_minor_sensitive_pkgs.rds'); sprintf('Precomputed %s package versions (%s r-minor-sensitive)', nrow(pkgs), nrow(pkgs[r_minor_sensitive == TRUE]))"
    backend_options:
      docker:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
--- a/.crow/build-all-versions.yaml
+++ b/.crow/build-all-versions.yaml
@ -1,201 +0,0 @@
 ### Manual full rebuild of all CRAN binaries for one OS/arch.
 # Set the variables below in the manual-run form (or via --var on the CLI).
 # `target_arch` routes the matrix; OS/OS_VERSION/R_VERSION select the platform
 # image and cache volume. Placement is via the group label (rpkgs-amd64/rpkgs-arm64).
 # Skip list lives in local/excluded-packages.json (read by local/build-all.R).
 variables:
  # Gates this pipeline. A manual pipeline creation instantiates every file in
  # .crow/, and a declared default is applied even when the run never passed
  # this variable, so the default must be a value that matches no matrix row.
  target_arch:
    description: 'Architecture to build, or "none" to run nothing.'
    options:
      - none
      - amd64
      - arm64
    default: none
  OS:
    description: 'Base OS image name.'
    options:
      - alpine
      - redhat
      - ubuntu
    default: alpine
  OS_VERSION:
    description: 'OS image tag. Must match OS (alpine: 3.24; redhat: 8/9/10; ubuntu: jammy/noble).'
    options:
      - '3.22'
      - '3.23'
      - '3.24'
      - '8'
      - '9'
      - '10'
      - 'jammy'
      - 'noble'
      - 'resolute'
    default: '3.24'
  R_VERSION:
    description: 'Primary R version under /opt/R.'
    options:
      - 4.5.3
      - 4.4.3
    default: 4.5.3
 when:
  - event: manual
    evaluate: 'target_arch == "${ARCH}"'
 skip_clone: true
 labels:
  platform: linux/${ARCH}
  group: rpkgs-${ARCH}
 # Empty UVR_CACHE_DIR/UVR_PACKAGES_DIR fall back to uvr's container-local
 # ~/.uvr defaults; amd64 deliberately does not persist them (as with the
 # pkgcache dir it replaces), arm64 does.
 matrix:
  include:
    - ARCH: amd64
      UVR_CACHE_DIR: ''
      UVR_PACKAGES_DIR: ''
      SPLIT_INTO: 4
      SPLIT_INDEX: 1
    - ARCH: amd64
      UVR_CACHE_DIR: ''
      UVR_PACKAGES_DIR: ''
      SPLIT_INTO: 4
      SPLIT_INDEX: 2
    - ARCH: amd64
      UVR_CACHE_DIR: ''
      UVR_PACKAGES_DIR: ''
      SPLIT_INTO: 4
      SPLIT_INDEX: 3
    - ARCH: amd64
      UVR_CACHE_DIR: ''
      UVR_PACKAGES_DIR: ''
      SPLIT_INTO: 4
      SPLIT_INDEX: 4
    - ARCH: arm64
      UVR_CACHE_DIR: /mnt/cache/uvr/cache
      UVR_PACKAGES_DIR: /mnt/cache/uvr/packages
      SPLIT_INTO: 4
      SPLIT_INDEX: 1
    - ARCH: arm64
      UVR_CACHE_DIR: /mnt/cache/uvr/cache
      UVR_PACKAGES_DIR: /mnt/cache/uvr/packages
      SPLIT_INTO: 4
      SPLIT_INDEX: 2
    - ARCH: arm64
      UVR_CACHE_DIR: /mnt/cache/uvr/cache
      UVR_PACKAGES_DIR: /mnt/cache/uvr/packages
      SPLIT_INTO: 4
      SPLIT_INDEX: 3
    - ARCH: arm64
      UVR_CACHE_DIR: /mnt/cache/uvr/cache
      UVR_PACKAGES_DIR: /mnt/cache/uvr/packages
      SPLIT_INTO: 4
      SPLIT_INDEX: 4
 depends_on:
  - build-all-versions-install-deps
 steps:
  - name: 'Build binaries'
    image: 'reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}'
    pull: true
    environment:
      OTEL_R_TRACES_EXPORTER: none
      OTEL_R_LOGS_EXPORTER: none
      OTEL_R_METRICS_EXPORTER: none
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      # set the location of uvr's caches, which persist the R package
      # dependencies needed to install the packages themselves
      UVR_CACHE_DIR: ${UVR_CACHE_DIR}
      UVR_PACKAGES_DIR: ${UVR_PACKAGES_DIR}
      R_LIBS_USER: /mnt/cache/R-pkgs
      CCACHE_DIR: /mnt/cache/ccache
      NCPUS: 2
    volumes:
      - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - mkdir -p /mnt/cache/uvr/cache /mnt/cache/uvr/packages /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # The primary pass must not rely on build-all-versions-install-deps having
      # run on *this* agent: depends_on only orders the steps, but the cache
      # volume is per-agent, so a job landing on an agent where install-deps did
      # not run would otherwise use a stale bincraft (which resolves `platform`
      # to a zero-length value and breaks every metadata query and the sysdeps
      # install). Pin bincraft here, exactly like the R-minor pass below.
      - rm -rf /mnt/cache/R-pkgs/00LOCK-*
      - /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
      - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
      - $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/$R_VERSION/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1
      - |
        PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
        for RBIN in /opt/R/[0-9]*/bin/R; do
          RV=$(basename "$(dirname "$(dirname "$RBIN")")")
          RMINOR=$(echo "$RV" | cut -d. -f1-2)
          [ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
          echo "=== R-minor-sensitive pass under R $RV ==="
          LIB="/mnt/cache/R-pkgs-$RMINOR"
          mkdir -p "$LIB"
          R_LIBS_USER="$LIB" "$(dirname "$RBIN")/Rscript" local/install-bincraft.R || true
          R_LIBS_USER="$LIB" $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- "$(dirname "$RBIN")/Rscript" local/build-all.R --sensitive-only $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1 || true
        done
      # archive missed packages; first arg is the codename (e.g. "alpine324"),
      # derived via bincraft like the upload step, not paste(OS, OS_VERSION).
      - /opt/R/$R_VERSION/bin/R -q -e "bincraft::process_unarchived_pkgs(bincraft::set_codename(NULL), Sys.getenv('ARCH'), s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), workers = $NCPUS)"
    backend_options:
      docker:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
          limits:
            memory: 20Gi
            cpu: 2000m
  - name: 'Upload package indexes'
    image: 'reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}'
    pull: true
    environment:
      OTEL_R_TRACES_EXPORTER: none
      OTEL_R_LOGS_EXPORTER: none
      OTEL_R_METRICS_EXPORTER: none
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      R_LIBS_USER: /mnt/cache/R-pkgs
    volumes:
      - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
    commands:
      - |
        CODENAME=$(/opt/R/$R_VERSION/bin/Rscript -e "cat(bincraft::set_codename(NULL))")
        /opt/R/$R_VERSION/bin/R -q -e "bincraft::upload_package_index(codename = '$CODENAME', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))"
        for RBIN in /opt/R/[0-9]*/bin/R; do
          RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
          /opt/R/$R_VERSION/bin/R -q -e "bincraft::upload_package_index(codename = '$CODENAME', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
        done
    backend_options:
      docker:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
          limits:
            memory: 20Gi
            cpu: 2000m
--- a/.crow/build-r-minor-sensitive-packages.yaml
+++ b/.crow/build-r-minor-sensitive-packages.yaml
@ -0,0 +1,80 @@
 when:
  - event: manual
    evaluate: 'build == "r-minor"'
 #   - event: manual
 #     evaluate: 'build == "alpine-322-arm64"'
 #   - event: manual
 #     evaluate: 'build == "alpine-322-arm64-1"'
 #   - event: manual
 #     evaluate: 'build == "all-arm64"'
 # skip_clone: true
 # depends_on:
 #   - alpine-322-arm64-install-deps
 matrix:
  include:
    - os: alpine
      os_version: 3.21
      r_version: 4.5.3
    - os: alpine
      os_version: 3.21
      r_version: 4.4.3
    # - os: alpine
    #   os_version: 3.21
    #   r_version: 4.3
 steps:
  - name: 'Build R-minor-sensitive binaries'
    image: "docker.io/devxygmbh/rpkgs-build-env-${os}:${os_version}"
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      NTFY_SERVER:
        from_secret: NTFY_SERVER
      NTFY_TOPIC:
        from_secret: NTFY_TOPIC
      NTFY_AUTH: TRUE
      NTFY_PASSWORD:
        from_secret: ntfy_token
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /tmp/R-libs:/mnt/cache/R-pkgs
      CCACHE_DIR: /mnt/cache/ccache
      NCPUS: 2
      STRATEGY: sequential
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-*
      - mkdir -p /tmp/R-libs
      - git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft && /opt/R/$R_VERSION/bin/R CMD INSTALL --library=/tmp/R-libs /tmp/bincraft && /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run)
      - $XVFB -- /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); pkgs = bincraft::get_r_minor_sensitive_packages(r_minor_packages_issue_url = 'https://git.devxy.io/api/v1/repos/devxy/build-cran-binaries/issues/29'); foo = lapply(pkgs, function(x) bincraft::build_binary_package(x, is_debug = FALSE, is_r_minor_sensitive = TRUE, force = FALSE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE))" 2>&1
    backend_options:
      kubernetes:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
          limits:
            memory: 20Gi
            cpu: 2000m
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'
--- a/.crow/process-updates-alpine-322-amd64.yaml
+++ b/.crow/process-updates-alpine-322-amd64.yaml
@ -0,0 +1,91 @@
 when:
  - event: [cron]
    cron: process-cran-updates-alpine-322-amd64
  - event: manual
    evaluate: 'process_cran_updates == "all"'
  - event: manual
    evaluate: 'process_cran_updates == "alpine-322-amd64"'
 skip_clone: true
 labels:
  agent: artemis
 steps:
  - name: 'Processing Updates'
    image: reg.devxy.io/rpkgs/build-env-alpine:3.22
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      NTFY_SERVER:
        from_secret: NTFY_SERVER
      NTFY_TOPIC:
        from_secret: NTFY_TOPIC
      NTFY_AUTH: TRUE
      NTFY_PASSWORD:
        from_secret: ntfy_token
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      R_VERSION: 4.5.3
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: alpine-322
      ARCH: amd64
      NCPUS: 2
      STRATEGY: sequential
      INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
    # volumes:
    #   - amd64-binaries-r-dep-cache-alpine-322:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
      - /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
      - /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
    backend_options:
      kubernetes:
        resources:
          requests:
            memory: 5Gi
            cpu: 3000m
          limits:
            memory: 18Gi
            cpu: 3000m
        nodeSelector:
          kubernetes.io/arch: amd64
          node.kubernetes.io/instance-type: AX42
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'
  - name: Purge CDN cache
    image: reg.devxy.io/docker.io/library/alpine:3.23
    environment:
      BUNNYNET_API_KEY:
        from_secret: BUNNYNET_API_KEY
      SUBDOMAIN1: 'cran.devxy.io'
      SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
      SUBDOMAIN3: 'cran.rpkgs.com'
      OS_ID: alpine322
      ARCH: amd64
    commands:
      - apk add --no-cache -q bash curl
      - bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
--- a/.crow/process-updates-alpine-322-arm64.yaml
+++ b/.crow/process-updates-alpine-322-arm64.yaml
@ -0,0 +1,73 @@
 when:
  - event: [cron]
    cron: process-cran-updates-alpine-322-arm64
  - event: manual
    evaluate: 'process_cran_updates == "all"'
  - event: manual
    evaluate: 'process_cran_updates == "alpine-322-arm64"'
 skip_clone: true
 labels:
  agent: gaia
 steps:
  - name: 'Processing Updates'
    image: reg.devxy.io/rpkgs/build-env-alpine:3.22
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      NTFY_SERVER:
        from_secret: NTFY_SERVER
      NTFY_TOPIC:
        from_secret: NTFY_TOPIC
      NTFY_AUTH: TRUE
      NTFY_PASSWORD:
        from_secret: ntfy_token
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      R_VERSION: 4.5.3
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: alpine-322
      ARCH: arm64
      NCPUS: 2
      INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
    # volumes:
    #   - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
      - /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
      - /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
  - name: Purge CDN cache
    image: reg.devxy.io/docker.io/library/alpine:3.23
    environment:
      BUNNYNET_API_KEY:
        from_secret: BUNNYNET_API_KEY
      SUBDOMAIN1: 'cran.devxy.io'
      SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
      SUBDOMAIN3: 'cran.rpkgs.com'
      OS_ID: alpine322
      ARCH: arm64
    commands:
      - apk add --no-cache -q bash curl
      - bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
--- a/.crow/process-updates-alpine-323-amd64.yaml
+++ b/.crow/process-updates-alpine-323-amd64.yaml
@ -0,0 +1,91 @@
 when:
  - event: [cron]
    cron: process-cran-updates-alpine-323-amd64
  - event: manual
    evaluate: 'process_cran_updates == "all"'
  - event: manual
    evaluate: 'process_cran_updates == "alpine-323-amd64"'
 skip_clone: true
 labels:
  agent: artemis
 steps:
  - name: 'Processing Updates'
    image: reg.devxy.io/rpkgs/build-env-alpine:3.23
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      NTFY_SERVER:
        from_secret: NTFY_SERVER
      NTFY_TOPIC:
        from_secret: NTFY_TOPIC
      NTFY_AUTH: TRUE
      NTFY_PASSWORD:
        from_secret: ntfy_token
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      R_VERSION: 4.5.3
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: alpine-323
      ARCH: amd64
      NCPUS: 2
      STRATEGY: sequential
      INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
    # volumes:
    #   - amd64-binaries-r-dep-cache-alpine-323:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
      - /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
      - /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
    backend_options:
      kubernetes:
        resources:
          requests:
            memory: 5Gi
            cpu: 3000m
          limits:
            memory: 18Gi
            cpu: 3000m
        nodeSelector:
          kubernetes.io/arch: amd64
          node.kubernetes.io/instance-type: AX42
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'
  - name: Purge CDN cache
    image: reg.devxy.io/docker.io/library/alpine:3.23
    environment:
      BUNNYNET_API_KEY:
        from_secret: BUNNYNET_API_KEY
      SUBDOMAIN1: 'cran.devxy.io'
      SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
      SUBDOMAIN3: 'cran.rpkgs.com'
      OS_ID: alpine323
      ARCH: amd64
    commands:
      - apk add --no-cache -q bash curl
      - bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
--- a/.crow/process-updates-alpine-323-arm64.yaml
+++ b/.crow/process-updates-alpine-323-arm64.yaml
@ -0,0 +1,73 @@
 when:
  - event: [cron]
    cron: process-cran-updates-alpine-323-arm64
  - event: manual
    evaluate: 'process_cran_updates == "all"'
  - event: manual
    evaluate: 'process_cran_updates == "alpine-323-arm64"'
 skip_clone: true
 labels:
  agent: gaia
 steps:
  - name: 'Processing Updates'
    image: reg.devxy.io/rpkgs/build-env-alpine:3.23
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      NTFY_SERVER:
        from_secret: NTFY_SERVER
      NTFY_TOPIC:
        from_secret: NTFY_TOPIC
      NTFY_AUTH: TRUE
      NTFY_PASSWORD:
        from_secret: ntfy_token
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      R_VERSION: 4.5.3
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: alpine-323
      ARCH: arm64
      NCPUS: 2
      INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
    # volumes:
    #   - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
      - /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
      - /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
  - name: Purge CDN cache
    image: reg.devxy.io/docker.io/library/alpine:3.23
    environment:
      BUNNYNET_API_KEY:
        from_secret: BUNNYNET_API_KEY
      SUBDOMAIN1: 'cran.devxy.io'
      SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
      SUBDOMAIN3: 'cran.rpkgs.com'
      OS_ID: alpine323
      ARCH: arm64
    commands:
      - apk add --no-cache -q bash curl
      - bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
--- a/.crow/process-updates-redhat-10-amd64.yaml
+++ b/.crow/process-updates-redhat-10-amd64.yaml
@ -0,0 +1,93 @@
 when:
  - event: [cron]
    cron: process-cran-updates-redhat-10-amd64
  - event: manual
    evaluate: 'process_cran_updates == "all"'
  - event: manual
    evaluate: 'process_cran_updates == "redhat-10-amd64"'
 skip_clone: true
 labels:
  agent: artemis
 steps:
  - name: 'Processing Updates'
    image: reg.devxy.io/rpkgs/build-env-redhat:10
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      NTFY_SERVER:
        from_secret: NTFY_SERVER
      NTFY_TOPIC:
        from_secret: NTFY_TOPIC
      NTFY_AUTH: TRUE
      NTFY_PASSWORD:
        from_secret: ntfy_token
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      R_VERSION: 4.5.3
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: redhat-10
      ARCH: amd64
      NCPUS: 2
      MEMORY: 18Gi
      STRATEGY: sequential
      INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
    # volumes:
    #   - amd64-binaries-r-dep-cache-redhat-10:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
      - /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
      - $XVFB $XVFB_ARGS -- /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-10', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
      - /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel10", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
    backend_options:
      kubernetes:
        resources:
          requests:
            memory: 5Gi
            cpu: 3000m
          limits:
            memory: 18Gi
            cpu: 3000m
        nodeSelector:
          kubernetes.io/arch: amd64
          node.kubernetes.io/instance-type: AX42
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'
  - name: Purge CDN cache
    image: reg.devxy.io/docker.io/library/alpine:3.23
    environment:
      BUNNYNET_API_KEY:
        from_secret: BUNNYNET_API_KEY
      SUBDOMAIN1: 'cran.devxy.io'
      SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
      SUBDOMAIN3: 'cran.rpkgs.com'
      OS_ID: rhel10
      ARCH: amd64
    commands:
      - apk add --no-cache -q bash curl
      - bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
--- a/.crow/process-updates-redhat-10-arm64.yaml
+++ b/.crow/process-updates-redhat-10-arm64.yaml
@ -0,0 +1,74 @@
 when:
  - event: [cron]
    cron: process-cran-updates-redhat-10-arm64
  - event: manual
    evaluate: 'process_cran_updates == "all"'
  - event: manual
    evaluate: 'process_cran_updates == "redhat-10-arm64"'
 skip_clone: true
 labels:
  agent: gaia
 steps:
  - name: 'Processing Updates'
    image: reg.devxy.io/rpkgs/build-env-redhat:10
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      NTFY_SERVER:
        from_secret: NTFY_SERVER
      NTFY_TOPIC:
        from_secret: NTFY_TOPIC
      NTFY_AUTH: TRUE
      NTFY_PASSWORD:
        from_secret: ntfy_token
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      R_VERSION: 4.5.3
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: redhat-10
      ARCH: arm64
      NCPUS: 2
      INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
    # volumes:
    #   - arm64-binaries-r-dep-cache-redhat-10:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
      - /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
      - $XVFB $XVFB_ARGS -- /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-10', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
      - /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel10", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
  - name: Purge CDN cache
    image: reg.devxy.io/docker.io/library/alpine:3.23
    environment:
      BUNNYNET_API_KEY:
        from_secret: BUNNYNET_API_KEY
      SUBDOMAIN1: 'cran.devxy.io'
      SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
      SUBDOMAIN3: 'cran.rpkgs.com'
      OS_ID: rhel10
      ARCH: arm64
    commands:
      - apk add --no-cache -q bash curl
      - bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
--- a/.crow/process-updates-redhat-8-amd64.yaml
+++ b/.crow/process-updates-redhat-8-amd64.yaml
@ -0,0 +1,91 @@
 when:
  - event: [cron]
    cron: process-cran-updates-redhat-8-amd64
  - event: manual
    evaluate: 'process_cran_updates == "all"'
  - event: manual
    evaluate: 'process_cran_updates == "redhat-8-amd64"'
 skip_clone: true
 labels:
  agent: artemis
 steps:
  - name: 'Processing Updates'
    image: reg.devxy.io/rpkgs/build-env-redhat:8
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      NTFY_SERVER:
        from_secret: NTFY_SERVER
      NTFY_TOPIC:
        from_secret: NTFY_TOPIC
      NTFY_AUTH: TRUE
      NTFY_PASSWORD:
        from_secret: ntfy_token
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      R_VERSION: 4.4.3
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: redhat-8
      ARCH: amd64
      NCPUS: 2
      STRATEGY: sequential
      INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
    # volumes:
    #   - amd64-binaries-r-dep-cache-redhat-8:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
      - /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
      - /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel8", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
    backend_options:
      kubernetes:
        resources:
          requests:
            memory: 5Gi
            cpu: 3000m
          limits:
            memory: 18Gi
            cpu: 3000m
        nodeSelector:
          kubernetes.io/arch: amd64
          node.kubernetes.io/instance-type: AX42
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'
  - name: Purge CDN cache
    image: reg.devxy.io/docker.io/library/alpine:3.23
    environment:
      BUNNYNET_API_KEY:
        from_secret: BUNNYNET_API_KEY
      SUBDOMAIN1: 'cran.devxy.io'
      SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
      SUBDOMAIN3: 'cran.rpkgs.com'
      OS_ID: rhel8
      ARCH: amd64
    commands:
      - apk add --no-cache -q bash curl
      - bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
--- a/.crow/process-updates-redhat-8-arm64.yaml
+++ b/.crow/process-updates-redhat-8-arm64.yaml
@ -0,0 +1,73 @@
 when:
  - event: [cron]
    cron: process-cran-updates-redhat-8-arm64
  - event: manual
    evaluate: 'process_cran_updates == "all"'
  - event: manual
    evaluate: 'process_cran_updates == "redhat-8-arm64"'
 skip_clone: true
 labels:
  agent: gaia
 steps:
  - name: 'Processing Updates'
    image: reg.devxy.io/rpkgs/build-env-redhat:8
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      NTFY_SERVER:
        from_secret: NTFY_SERVER
      NTFY_TOPIC:
        from_secret: NTFY_TOPIC
      NTFY_AUTH: TRUE
      NTFY_PASSWORD:
        from_secret: ntfy_token
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      R_VERSION: 4.4.3
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: redhat-8
      ARCH: arm64
      NCPUS: 2
      INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
    # volumes:
    #   - arm64-binaries-r-dep-cache-redhat-8:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
      - /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
      - /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel8", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
  - name: Purge CDN cache
    image: reg.devxy.io/docker.io/library/alpine:3.23
    environment:
      BUNNYNET_API_KEY:
        from_secret: BUNNYNET_API_KEY
      SUBDOMAIN1: 'cran.devxy.io'
      SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
      SUBDOMAIN3: 'cran.rpkgs.com'
      OS_ID: rhel8
      ARCH: arm64
    commands:
      - apk add --no-cache -q bash curl
      - bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
--- a/.crow/process-updates-redhat-9-amd64.yaml
+++ b/.crow/process-updates-redhat-9-amd64.yaml
@ -0,0 +1,92 @@
 when:
  - event: [cron]
    cron: process-cran-updates-redhat-9-amd64
  - event: manual
    evaluate: 'process_cran_updates == "all"'
  - event: manual
    evaluate: 'process_cran_updates == "redhat-9-amd64"'
 skip_clone: true
 labels:
  agent: artemis
 steps:
  - name: 'Processing Updates'
    image: reg.devxy.io/rpkgs/build-env-redhat:9
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      NTFY_SERVER:
        from_secret: NTFY_SERVER
      NTFY_TOPIC:
        from_secret: NTFY_TOPIC
      NTFY_AUTH: TRUE
      NTFY_PASSWORD:
        from_secret: ntfy_token
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      R_VERSION: 4.4.3
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: redhat-9
      ARCH: amd64
      NCPUS: 2
      MEMORY: 18Gi
      STRATEGY: sequential
      INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
    # volumes:
    #   - amd64-binaries-r-dep-cache-redhat-9:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
      - /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
      - /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
    backend_options:
      kubernetes:
        resources:
          requests:
            memory: 5Gi
            cpu: 3000m
          limits:
            memory: 18Gi
            cpu: 3000m
        nodeSelector:
          kubernetes.io/arch: amd64
          node.kubernetes.io/instance-type: AX42
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'
  - name: Purge CDN cache
    image: reg.devxy.io/docker.io/library/alpine:3.23
    environment:
      BUNNYNET_API_KEY:
        from_secret: BUNNYNET_API_KEY
      SUBDOMAIN1: 'cran.devxy.io'
      SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
      SUBDOMAIN3: 'cran.rpkgs.com'
      OS_ID: rhel9
      ARCH: amd64
    commands:
      - apk add --no-cache -q bash curl
      - bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
--- a/.crow/process-updates-redhat-9-arm64.yaml
+++ b/.crow/process-updates-redhat-9-arm64.yaml
@ -0,0 +1,73 @@
 when:
  - event: [cron]
    cron: process-cran-updates-redhat-9-arm64
  - event: manual
    evaluate: 'process_cran_updates == "all"'
  - event: manual
    evaluate: 'process_cran_updates == "redhat-9-arm64"'
 skip_clone: true
 labels:
  agent: gaia
 steps:
  - name: 'Processing Updates'
    image: reg.devxy.io/rpkgs/build-env-redhat:9
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      NTFY_SERVER:
        from_secret: NTFY_SERVER
      NTFY_TOPIC:
        from_secret: NTFY_TOPIC
      NTFY_AUTH: TRUE
      NTFY_PASSWORD:
        from_secret: ntfy_token
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      R_VERSION: 4.4.3
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: redhat-9
      ARCH: arm64
      NCPUS: 2
      INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
    # volumes:
    #   - arm64-binaries-r-dep-cache-redhat-9:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
      - /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
      - /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
  - name: Purge CDN cache
    image: reg.devxy.io/docker.io/library/alpine:3.23
    environment:
      BUNNYNET_API_KEY:
        from_secret: BUNNYNET_API_KEY
      SUBDOMAIN1: 'cran.devxy.io'
      SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
      SUBDOMAIN3: 'cran.rpkgs.com'
      OS_ID: rhel9
      ARCH: arm64
    commands:
      - apk add --no-cache -q bash curl
      - bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
--- a/.crow/process-updates-ubuntu-2204-amd64.yaml
+++ b/.crow/process-updates-ubuntu-2204-amd64.yaml
@ -0,0 +1,92 @@
 when:
  - event: [cron]
    cron: process-cran-updates-ubuntu-2204-amd64
  - event: manual
    evaluate: 'process_cran_updates == "all"'
  - event: manual
    evaluate: 'process_cran_updates == "ubuntu-2204-amd64"'
 skip_clone: true
 labels:
  agent: artemis
 steps:
  - name: 'Processing Updates'
    image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      NTFY_SERVER:
        from_secret: NTFY_SERVER
      NTFY_TOPIC:
        from_secret: NTFY_TOPIC
      NTFY_AUTH: TRUE
      NTFY_PASSWORD:
        from_secret: ntfy_token
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      R_VERSION: 4.4.3
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: ubuntu-2204
      ARCH: amd64
      NCPUS: 2
      MEMORY: 18Gi
      STRATEGY: sequential
      INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
    # volumes:
    #   - amd64-binaries-r-dep-cache-ubuntu-2204:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
      - /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2204', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
      - /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "jammy", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
    backend_options:
      kubernetes:
        resources:
          requests:
            memory: 5Gi
            cpu: 3000m
          limits:
            memory: 18Gi
            cpu: 3000m
        nodeSelector:
          kubernetes.io/arch: amd64
          node.kubernetes.io/instance-type: AX42
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'
  - name: Purge CDN cache
    image: reg.devxy.io/docker.io/library/alpine:3.23
    environment:
      BUNNYNET_API_KEY:
        from_secret: BUNNYNET_API_KEY
      SUBDOMAIN1: 'cran.devxy.io'
      SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
      SUBDOMAIN3: 'cran.rpkgs.com'
      OS_ID: jammy
      ARCH: amd64
    commands:
      - apk add --no-cache -q bash curl
      - bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
--- a/Show more
+++ b/Show more