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Author SHA1 Message Date
346f5629eb
refactor: collapse cdn.tf pullzones into for_each
bunnynet_pullzone.devxy-r-binaries (cran.devxy.io) and
bunnynet_pullzone.cran_rpkgs_com (cran.rpkgs.com) were byte-for-byte
identical except for the zone name and hostname. Same for the two
pullzone_hostname resources.

Use a single local.pullzones map and for_each on both resources, so
shared knobs (block_ips, limit_bandwidth, s3_auth_*, ...) only have
to be edited once.

State migration is handled by moved {} blocks so the existing
pullzones get re-addressed under the new for_each keys instead of
being destroyed+recreated. Run terraform plan to confirm a zero-
change apply before applying.
2026-05-28 15:52:28 +02:00
156 changed files with 3916 additions and 14590 deletions

View file

@ -6,6 +6,7 @@ when:
- event: cron
cron: archive-missed-packages
matrix:
include:
- CODENAME: jammy
@ -24,18 +25,18 @@ matrix:
ARCH: amd64
- CODENAME: redhat-9
ARCH: arm64
- CODENAME: redhat-10
- CODENAME: alpine321
ARCH: amd64
- CODENAME: redhat-10
- CODENAME: alpine321
ARCH: arm64
- CODENAME: alpine323
- CODENAME: alpine322
ARCH: amd64
- CODENAME: alpine323
- CODENAME: alpine322
ARCH: arm64
steps:
- name: 'Archive missed packages'
image: reg.devxy.io/rpkgs/build-env-alpine:3.24
image: reg.devxy.io/rpkgs/build-env-alpine:3.23
pull: true
environment:
RED_HAT_DEV_PW:
@ -54,9 +55,9 @@ steps:
GIT_USER: pat-s
R_VERSION: 4.5.3
commands:
- /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0", dependencies = TRUE)'
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
- /opt/R/$R_VERSION/bin/R -q -e 'bincraft::process_unarchived_pkgs(Sys.getenv("CODENAME"), Sys.getenv("ARCH"), s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"), workers = 2L)'
- /opt/R/$R_VERSION/bin/R -q -e 'bincraft::process_unarchived_pkgs(Sys.getenv("CODENAME"), Sys.getenv("ARCH"), workers = 2L)'
backend_options:
kubernetes:
resources:

View file

@ -1,76 +0,0 @@
# Auto-apply registry patches (issue #115, step 3 automation).
# Classifies `single_builds` failures and, for the top-N auto-proposable
# candidates by failure volume, writes the registry entries onto the reused
# `auto/registry-patch-proposals` branch and opens/updates a single PR.
# Nothing merges: the `trial-build-registry` pipeline is the merge gate, and a
# human reviews the PR. Novel source diffs / unknown signatures are never
# proposed. Global across platforms, so a single job -- no matrix.
#
# FORGEJO_TOKEN is used for both the branch push and opening the PR (no separate
# write-scoped secret needed). Register the `auto-apply-patches` cron in the crow
# UI, or run manually:
# crow pipeline create --branch main \
# --var auto_apply_patches=true devxy/build-cran-binaries
#
# The gate variable is `auto_apply_patches`, named after the pipeline: a manual
# run instantiates every pipeline in `.crow/`, so one without its own gate runs
# on *any* manual trigger in this repo. This one pushes a branch and opens a PR,
# so it must stay off unless it is what was asked for.
variables:
auto_apply_patches:
description: 'Run the auto-patch proposer. Also gates this pipeline.'
options:
- 'true'
- 'false'
default: 'false'
patch_limit:
description: 'Max candidates to propose per run (top by failure volume).'
default: '10'
when:
- event: manual
evaluate: 'auto_apply_patches == "true"'
- event: cron
cron: auto-apply-patches
skip_clone: true
labels:
group: rpkgs-amd64
steps:
- name: 'Auto-apply registry patches'
image: reg.devxy.io/rpkgs/build-env-alpine:3.24
pull: true
environment:
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
FORGEJO_TOKEN:
from_secret: FORGEJO_TOKEN
GIT_USER: devxy-bot
GIT_EMAIL: bot@devxy.io
PATCH_LIMIT: ${patch_limit}
R_VERSION: 4.5.3
R_LIBS_USER: /mnt/cache/R-pkgs
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- mkdir -p /mnt/cache/R-pkgs
- rm -rf /mnt/cache/R-pkgs/00LOCK-*
- UVR_R_BIN=/opt/R/$R_VERSION/bin/R local/uvr-install.sh RPostgres httr2 jsonlite
- /opt/R/$R_VERSION/bin/Rscript local/propose-patches.R --open-pr --limit $PATCH_LIMIT
backend_options:
kubernetes:
resources:
requests:
memory: 1Gi
cpu: 2000m
limits:
memory: 2Gi
cpu: 2000m
tolerations:
- key: 'CI'
operator: 'Equal'
value: 'true'
effect: 'NoSchedule'

View file

@ -1,90 +0,0 @@
# Populate the ABI classifier cache for packages that predate the per-minor scheme.
#
# bincraft decides whether a flat binary may be carried into a per-minor index
# from its risky-package set. That set is now the union of the per-minor tarball
# scan and the `abi_classification` cache, but the cache only holds verdicts for
# packages that passed through the build pipeline after the scheme existed.
# Everything older has no verdict, and no verdict means "carry it" - which is how
# a base64enc built under R 4.4.3 reached R 4.6 clients and died at dyn.load()
# on SETLENGTH.
#
# The verdict is computed from the package source, so it does not depend on OS,
# arch or R minor: one run populates the cache for every slot. The arch/codename
# below only choose which flat index to enumerate.
#
# Re-running is cheap. Cached verdicts are returned without touching the network,
# so a second run costs one query per package and downloads only what is still
# unclassified.
#
# crow pipeline create devxy/build-cran-binaries --var backfill_abi=run
variables:
# A manual pipeline creation instantiates every file in .crow/, so the default
# must be a value the `when` clause rejects.
backfill_abi:
description: "Set to 'run' to classify the flat index into the ABI cache."
options:
- none
- run
default: none
BACKFILL_ARCH:
description: 'Arch of the flat index to enumerate.'
options:
- amd64
- arm64
default: amd64
BACKFILL_CODENAME:
description: 'Codename of the flat index to enumerate.'
default: resolute
BACKFILL_LIMIT:
description: 'Classify at most this many packages (0 = no limit).'
default: '0'
when:
- event: manual
evaluate: 'backfill_abi == "run"'
skip_clone: true
labels:
group: rpkgs-amd64
steps:
- name: 'Classify the flat index into the ABI cache'
image: reg.devxy.io/rpkgs/build-env-ubuntu:resolute
pull: true
environment:
OTEL_R_TRACES_EXPORTER: none
OTEL_R_LOGS_EXPORTER: none
OTEL_R_METRICS_EXPORTER: none
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
GIT_USER: pat-s
# Pipeline variables are substituted into the YAML, not exported, so they
# have to be bound here to be readable as env vars in the script below.
BACKFILL_ARCH: ${BACKFILL_ARCH}
BACKFILL_CODENAME: ${BACKFILL_CODENAME}
BACKFILL_LIMIT: ${BACKFILL_LIMIT}
R_LIBS_USER: /tmp/R-pkgs
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- mkdir -p /tmp/R-pkgs
- /opt/R/4.5.3/bin/Rscript local/install-bincraft.R
- |
set -eu
LIMIT=""
if [ "$$BACKFILL_LIMIT" != "0" ]; then
LIMIT="$$BACKFILL_LIMIT"
fi
/opt/R/4.5.3/bin/Rscript local/backfill-abi-classification.R \
"$$BACKFILL_ARCH" "$$BACKFILL_CODENAME" $$LIMIT
backend_options:
docker:
resources:
requests:
memory: 4Gi
cpu: 1000m

View file

@ -1,176 +0,0 @@
# Record, per flat-slot object, whether it loads under every supported R minor.
#
# `union_index_records()` keeps a carried flat record when that object is
# recorded safe and drops it otherwise. Objects uploaded before that record
# existed have no verdict, so they are dropped: a full re-index removed roughly
# 2000 records per per-minor index (16398 across the 4.4 indexes, 20076 across
# 4.5, 15532 across 4.6), each one resolving to CRAN source for clients the
# routing serves correctly.
#
# This inspects what is already in the bucket and writes the verdict, which is
# what restores that coverage. Decided by symbols rather than heuristics: a
# binary fails at dyn.load() under minor M exactly when it references a symbol M
# does not export, and the volatile set is derived by diffing the R builds in
# the image.
#
# Re-running is cheap; recorded objects are skipped.
#
# crow pipeline create devxy/build-cran-binaries --var flat_safety=all
variables:
# A manual pipeline creation instantiates every file in .crow/, so the default
# must match no matrix row.
flat_safety:
description: "Inspect target: a specific <os>-<arch>, 'all' for every slot, or 'none'."
options:
- none
- all
- alpine-323-amd64
- alpine-323-arm64
- alpine-324-amd64
- alpine-324-arm64
- redhat-8-amd64
- redhat-8-arm64
- redhat-9-amd64
- redhat-9-arm64
- redhat-10-amd64
- redhat-10-arm64
- ubuntu-2204-amd64
- ubuntu-2204-arm64
- ubuntu-2404-amd64
- ubuntu-2404-arm64
- ubuntu-2604-amd64
- ubuntu-2604-arm64
default: none
FLAT_SAFETY_LIMIT:
description: 'Inspect at most this many objects per slot (0 = no limit).'
default: '0'
when:
- event: manual
evaluate: 'flat_safety == "all" || flat_safety == "${OS}-${ARCH}"'
skip_clone: true
labels:
group: rpkgs-${ARCH}
matrix:
include:
- OS: alpine-323
ARCH: amd64
R_VERSION: 4.5.3
IMG: alpine:3.23
- OS: alpine-323
ARCH: arm64
R_VERSION: 4.5.3
IMG: alpine:3.23
- OS: alpine-324
ARCH: amd64
R_VERSION: 4.5.3
IMG: alpine:3.24
- OS: alpine-324
ARCH: arm64
R_VERSION: 4.5.3
IMG: alpine:3.24
- OS: redhat-8
ARCH: amd64
R_VERSION: 4.4.3
IMG: redhat:8
- OS: redhat-8
ARCH: arm64
R_VERSION: 4.4.3
IMG: redhat:8
- OS: redhat-9
ARCH: amd64
R_VERSION: 4.4.3
IMG: redhat:9
- OS: redhat-9
ARCH: arm64
R_VERSION: 4.4.3
IMG: redhat:9
- OS: redhat-10
ARCH: amd64
R_VERSION: 4.5.3
IMG: redhat:10
- OS: redhat-10
ARCH: arm64
R_VERSION: 4.5.3
IMG: redhat:10
- OS: ubuntu-2204
ARCH: amd64
R_VERSION: 4.4.3
IMG: ubuntu:jammy
- OS: ubuntu-2204
ARCH: arm64
R_VERSION: 4.4.3
IMG: ubuntu:jammy
- OS: ubuntu-2404
ARCH: amd64
R_VERSION: 4.4.3
IMG: ubuntu:noble
- OS: ubuntu-2404
ARCH: arm64
R_VERSION: 4.4.3
IMG: ubuntu:noble
- OS: ubuntu-2604
ARCH: amd64
R_VERSION: 4.4.3
IMG: ubuntu:resolute
- OS: ubuntu-2604
ARCH: arm64
R_VERSION: 4.4.3
IMG: ubuntu:resolute
steps:
- name: 'Inspect flat objects and record safety'
image: reg.devxy.io/rpkgs/build-env-${IMG}
pull: true
environment:
OTEL_R_TRACES_EXPORTER: none
OTEL_R_LOGS_EXPORTER: none
OTEL_R_METRICS_EXPORTER: none
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
# uvr resolves bincraft's dependencies through the GitHub API, including
# the pat-s/cranlike@s3 fork. Unauthenticated it is rate limited, and the
# failure is not loud: uvr warns, falls back to the registry copy of
# cranlike, and the index write then dies on `unused argument (built =
# built)` because upstream has no such parameter. Intermittent by nature,
# since it depends on the rate-limit window.
GITHUB_PAT:
from_secret: GITHUB_PAT
GIT_USER: pat-s
R_LIBS_USER: /tmp/R-pkgs
FLAT_SAFETY_ARCH: ${ARCH}
FLAT_SAFETY_LIMIT: ${FLAT_SAFETY_LIMIT}
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- mkdir -p /tmp/R-pkgs
- /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
- |
set -eu
LIMIT=""
if [ "$$FLAT_SAFETY_LIMIT" != "0" ]; then
LIMIT="$$FLAT_SAFETY_LIMIT"
fi
# The codename comes from the image's /etc/os-release, exactly as the
# re-index step derives it, so it cannot drift from the matrix.
CODENAME=$(/opt/R/$R_VERSION/bin/Rscript -e 'cat(bincraft::set_codename(NULL))')
echo "slot: $$FLAT_SAFETY_ARCH/$$CODENAME"
/opt/R/$R_VERSION/bin/Rscript local/backfill-flat-safety.R \
"$$FLAT_SAFETY_ARCH" "$$CODENAME" $$LIMIT
backend_options:
docker:
resources:
requests:
memory: 4Gi
cpu: 1000m

View file

@ -0,0 +1,99 @@
### Required extra vars
# ARCH (amd64)
# OS (alpine)
# OS_VERSION (3.22)
# R_VERSION (4.5.3)
# crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5
# crow pipeline create --var ARCH=arm64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5
# crow pipeline create --var ARCH=amd64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-amd64 --branch=main --log-level=info 5
when:
- event: manual
evaluate: 'task == "build-all-amd64"'
skip_clone: true
labels:
platform: linux/amd64
agent: artemis
matrix:
include:
- SPLIT_INTO: 4
SPLIT_INDEX: 1
BACKEND: kubernetes
- SPLIT_INTO: 4
SPLIT_INDEX: 2
BACKEND: kubernetes
- SPLIT_INTO: 4
SPLIT_INDEX: 3
BACKEND: kubernetes
- SPLIT_INTO: 4
SPLIT_INDEX: 4
BACKEND: kubernetes
# - SPLIT_INTO: 4
# SPLIT_INDEX: 5
# BACKEND: kubernetes
depends_on:
- build-all-versions-install-deps-amd64
steps:
- name: 'Build binaries'
image: "reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}"
pull: true
environment:
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
# normal env vars
GIT_USER: pat-s
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
R_PKG_CACHE_DIR: ""
R_LIBS_USER: /mnt/cache/R-pkgs
CCACHE_DIR: /mnt/cache/ccache
NCPUS: 2
volumes:
- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'rFUSION', 'MediaNews'
# pkgs = readRDS('/mnt/cache/pkgs_amd64.rds');
- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
- $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/$R_VERSION/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1
# archive missed packages
- /opt/R/$R_VERSION/bin/R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)"
backend_options:
docker:
resources:
requests:
memory: 5Gi
cpu: 1000m
limits:
memory: 20Gi
cpu: 2000m
kubernetes:
resources:
requests:
memory: 5Gi
cpu: 1000m
limits:
memory: 20Gi
cpu: 2000m
nodeSelector:
kubernetes.io/arch: ${ARCH}
node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
tolerations:
- key: 'CI'
operator: 'Equal'
value: 'true'
effect: 'NoSchedule'

View file

@ -0,0 +1,112 @@
### Required extra vars
# ARCH (amd64)
# OS (alpine)
# OS_VERSION (3.22)
# R_VERSION (4.5.3)
# echo "c('RInno','KeyboardSimulator','R2PPT','RWinEdt','blatr','excel.link','spectrino','taskscheduleR','MDSGUI','BiplotGUI','R2wd','rFUSION','MediaNews','doBy','IDPmisc','frailtypack','afex','FrF2','DoE.base','agricolae','doFuture','fscaret','PHYLOGR','seewave','pls','relaimpo','geepack','gggenes','NPCirc','repmis','PNDSIBGE','lidR','poismf','neonstore','MachineShop','mvst','MacBehaviour','mcmcderive','RGIFT','KnowBR','netmeta','spdep','sf','Rfast','compareGroups','ff','GsymPoint','RcppDynProg','comtradr','RcppDynProg','FD','PearsonDS','DCluster','gRc','mixlm','geospt','fdth','ffmanova','fiery','ffscrapr','cold','fiery','RcmdrPlugin.DoE','RcmdrPlugin.NMBU')" | base64
# crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.22 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --var SKIP_PKGS=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 --log-level=info 7
# crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --log-level=info 5
# crow pipeline create --var ARCH=arm64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5
when:
- event: manual
evaluate: 'task == "build-all-arm64"'
skip_clone: true
labels:
agent: gaia
matrix:
include:
# - SPLIT_INTO: 5
# SPLIT_INDEX: 1
# BACKEND: kubernetes
# - SPLIT_INTO: 5
# SPLIT_INDEX: 2
# BACKEND: kubernetes
# - SPLIT_INTO: 5
# SPLIT_INDEX: 3
# BACKEND: kubernetes
# - SPLIT_INTO: 5
# SPLIT_INDEX: 4
# BACKEND: kubernetes
# - SPLIT_INTO: 5
# SPLIT_INDEX: 5
# BACKEND: kubernetes
- SPLIT_INTO: 4
SPLIT_INDEX: 1
BACKEND: docker
- SPLIT_INTO: 4
SPLIT_INDEX: 2
BACKEND: docker
- SPLIT_INTO: 4
SPLIT_INDEX: 3
BACKEND: docker
- SPLIT_INTO: 4
SPLIT_INDEX: 4
BACKEND: docker
# - SPLIT_INTO: 5
# SPLIT_INDEX: 5
# BACKEND: docker
depends_on:
- build-all-versions-install-deps-arm64
steps:
- name: 'Build binaries'
image: "reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}"
pull: true
environment:
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
# normal env vars
GIT_USER: pat-s
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
CCACHE_DIR: /mnt/cache/ccache
NCPUS: 2
volumes:
- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
- $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/$R_VERSION/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1
# archive missed packages
- /opt/R/$R_VERSION/bin/R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)"
backend_options:
docker:
resources:
requests:
memory: 5Gi
cpu: 1000m
limits:
memory: 20Gi
cpu: 2000m
kubernetes:
resources:
requests:
memory: 5Gi
cpu: 1000m
limits:
memory: 20Gi
cpu: 2000m
nodeSelector:
kubernetes.io/arch: ${ARCH}
node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
tolerations:
- key: 'CI'
operator: 'Equal'
value: 'true'
effect: 'NoSchedule'

View file

@ -0,0 +1,57 @@
when:
- event: manual
evaluate: 'task == "build-all-amd64"'
skip_clone: true
labels:
platform: linux/${ARCH}
agent: artemis
steps:
- name: 'Install deps and bincraft'
image: "reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}"
pull: true
environment:
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
CCACHE_DIR: /mnt/cache/ccache
volumes:
- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
commands:
# one-time full wipe to fix corrupted .so files from previous failed builds
# - rm -rf /mnt/cache/R-pkgs
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft
- /opt/R/$R_VERSION/bin/R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")'
- /opt/R/$R_VERSION/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s package versions to build', nrow(pkgs))"
backend_options:
docker:
resources:
requests:
memory: 5Gi
cpu: 1000m
kubernetes:
resources:
requests:
memory: 5Gi
cpu: 1000m
nodeSelector:
kubernetes.io/arch: ${ARCH}
node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
tolerations:
- key: 'CI'
operator: 'Equal'
value: 'true'
effect: 'NoSchedule'

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@ -0,0 +1,56 @@
when:
- event: manual
evaluate: 'task == "build-all-arm64"'
skip_clone: true
labels:
agent: gaia
steps:
- name: 'Install deps and bincraft'
image: "reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}"
pull: true
environment:
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
CCACHE_DIR: /mnt/cache/ccache
volumes:
- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
commands:
# one-time full wipe to fix corrupted .so files from previous failed builds
# - rm -rf /mnt/cache/R-pkgs
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft
- /opt/R/$R_VERSION/bin/R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")'
- /opt/R/$R_VERSION/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s package versions to build', nrow(pkgs))"
backend_options:
docker:
resources:
requests:
memory: 5Gi
cpu: 1000m
kubernetes:
resources:
requests:
memory: 5Gi
cpu: 1000m
nodeSelector:
kubernetes.io/arch: ${ARCH}
node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
tolerations:
- key: 'CI'
operator: 'Equal'
value: 'true'
effect: 'NoSchedule'

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@ -1,97 +0,0 @@
# Consolidated install-deps for build-all (both arches in one file).
# Triggered together with build-all-versions; `target_arch` routes the matrix.
# Variables are declared so the manual-run form exposes them (crow #1165);
# they are merged with build-all-versions' identical declarations.
variables:
# Gates this pipeline. A manual pipeline creation instantiates every file in
# .crow/, and a declared default is applied even when the run never passed
# this variable, so the default must be a value that matches no matrix row.
target_arch:
description: 'Architecture to build, or "none" to run nothing.'
options:
- none
- amd64
- arm64
default: none
OS:
description: 'Base OS image name.'
options:
- alpine
- redhat
- ubuntu
default: alpine
OS_VERSION:
description: 'OS image tag. Must match OS (alpine: 3.24; redhat: 8/9/10; ubuntu: jammy/noble).'
options:
- '3.24'
- '8'
- '9'
- '10'
- 'jammy'
- 'noble'
default: '3.24'
R_VERSION:
description: 'Primary R version under /opt/R.'
options:
- 4.5.3
- 4.4.3
default: 4.5.3
when:
- event: manual
evaluate: 'target_arch == "${ARCH}"'
skip_clone: true
labels:
platform: linux/${ARCH}
group: rpkgs-${ARCH}
matrix:
include:
- ARCH: amd64
- ARCH: arm64
steps:
- name: 'Install deps and bincraft'
image: 'reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}'
pull: true
environment:
OTEL_R_TRACES_EXPORTER: none
OTEL_R_LOGS_EXPORTER: none
OTEL_R_METRICS_EXPORTER: none
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
R_LIBS_USER: /mnt/cache/R-pkgs
# Keep uvr's downloads and extracted-package entries on the persistent
# volume instead of the container-local ~/.uvr default.
UVR_CACHE_DIR: /mnt/cache/uvr/cache
UVR_PACKAGES_DIR: /mnt/cache/uvr/packages
CCACHE_DIR: /mnt/cache/ccache
volumes:
- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
commands:
# one-time full wipe to fix corrupted .so files from previous failed builds
# - rm -rf /mnt/cache/R-pkgs
- mkdir -p /mnt/cache/uvr/cache /mnt/cache/uvr/packages /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
# Pin the same bincraft version the build steps use, so the precomputed
# snapshot and the per-agent library stay consistent across the pipeline.
- /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
- UVR_R_BIN=/opt/R/$R_VERSION/bin/R local/uvr-install.sh RPostgres s3fs data.table future jsonlite
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
- /opt/R/$R_VERSION/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); saveRDS(pkgs[r_minor_sensitive == TRUE], '/mnt/cache/packages/r_minor_sensitive_pkgs.rds'); sprintf('Precomputed %s package versions (%s r-minor-sensitive)', nrow(pkgs), nrow(pkgs[r_minor_sensitive == TRUE]))"
backend_options:
docker:
resources:
requests:
memory: 5Gi
cpu: 1000m

View file

@ -1,215 +0,0 @@
### Manual full rebuild of all CRAN binaries for one OS/arch.
# Set the variables below in the manual-run form (or via --var on the CLI).
# `target_arch` routes the matrix; OS/OS_VERSION/R_VERSION select the platform
# image and cache volume. Placement is via the group label (rpkgs-amd64/rpkgs-arm64).
# Skip list lives in local/excluded-packages.json (read by local/build-all.R).
variables:
# Gates this pipeline. A manual pipeline creation instantiates every file in
# .crow/, and a declared default is applied even when the run never passed
# this variable, so the default must be a value that matches no matrix row.
target_arch:
description: 'Architecture to build, or "none" to run nothing.'
options:
- none
- amd64
- arm64
default: none
OS:
description: 'Base OS image name.'
options:
- alpine
- redhat
- ubuntu
default: alpine
OS_VERSION:
description: 'OS image tag. Must match OS (alpine: 3.24; redhat: 8/9/10; ubuntu: jammy/noble).'
options:
- '3.23'
- '3.24'
- '8'
- '9'
- '10'
- 'jammy'
- 'noble'
- 'resolute'
default: '3.24'
R_VERSION:
# The slot's *primary* R minor: what `local/build-all.R` builds into the
# generic slot. The loop below already runs `--sensitive-only` for every
# other installed minor, so filling a non-primary minor's gap needs this
# left alone, not changed.
#
# 4.6.0 was briefly offered here (#183) and removed: selecting it for a
# slot whose generic binaries are 4.5-built would publish 4.6 binaries
# into the generic slot and break every 4.5 client.
description: 'Primary R version under /opt/R.'
options:
- 4.5.3
- 4.4.3
default: 4.5.3
when:
- event: manual
evaluate: 'target_arch == "${ARCH}"'
skip_clone: true
labels:
platform: linux/${ARCH}
group: rpkgs-${ARCH}
# Empty UVR_CACHE_DIR/UVR_PACKAGES_DIR fall back to uvr's container-local
# ~/.uvr defaults; amd64 deliberately does not persist them (as with the
# pkgcache dir it replaces), arm64 does.
matrix:
include:
- ARCH: amd64
UVR_CACHE_DIR: ''
UVR_PACKAGES_DIR: ''
SPLIT_INTO: 4
SPLIT_INDEX: 1
- ARCH: amd64
UVR_CACHE_DIR: ''
UVR_PACKAGES_DIR: ''
SPLIT_INTO: 4
SPLIT_INDEX: 2
- ARCH: amd64
UVR_CACHE_DIR: ''
UVR_PACKAGES_DIR: ''
SPLIT_INTO: 4
SPLIT_INDEX: 3
- ARCH: amd64
UVR_CACHE_DIR: ''
UVR_PACKAGES_DIR: ''
SPLIT_INTO: 4
SPLIT_INDEX: 4
- ARCH: arm64
UVR_CACHE_DIR: /mnt/cache/uvr/cache
UVR_PACKAGES_DIR: /mnt/cache/uvr/packages
SPLIT_INTO: 4
SPLIT_INDEX: 1
- ARCH: arm64
UVR_CACHE_DIR: /mnt/cache/uvr/cache
UVR_PACKAGES_DIR: /mnt/cache/uvr/packages
SPLIT_INTO: 4
SPLIT_INDEX: 2
- ARCH: arm64
UVR_CACHE_DIR: /mnt/cache/uvr/cache
UVR_PACKAGES_DIR: /mnt/cache/uvr/packages
SPLIT_INTO: 4
SPLIT_INDEX: 3
- ARCH: arm64
UVR_CACHE_DIR: /mnt/cache/uvr/cache
UVR_PACKAGES_DIR: /mnt/cache/uvr/packages
SPLIT_INTO: 4
SPLIT_INDEX: 4
depends_on:
- build-all-versions-install-deps
steps:
- name: 'Build binaries'
image: 'reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}'
pull: true
environment:
OTEL_R_TRACES_EXPORTER: none
OTEL_R_LOGS_EXPORTER: none
OTEL_R_METRICS_EXPORTER: none
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
# normal env vars
GIT_USER: pat-s
# set the location of uvr's caches, which persist the R package
# dependencies needed to install the packages themselves
UVR_CACHE_DIR: ${UVR_CACHE_DIR}
UVR_PACKAGES_DIR: ${UVR_PACKAGES_DIR}
R_LIBS_USER: /mnt/cache/R-pkgs
CCACHE_DIR: /mnt/cache/ccache
NCPUS: 2
volumes:
- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- mkdir -p /mnt/cache/uvr/cache /mnt/cache/uvr/packages /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# The primary pass must not rely on build-all-versions-install-deps having
# run on *this* agent: depends_on only orders the steps, but the cache
# volume is per-agent, so a job landing on an agent where install-deps did
# not run would otherwise use a stale bincraft (which resolves `platform`
# to a zero-length value and breaks every metadata query and the sysdeps
# install). Pin bincraft here, exactly like the R-minor pass below.
- rm -rf /mnt/cache/R-pkgs/00LOCK-*
- /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
# The dependency-prep job may run on another agent whose cache volume is
# not visible here. Install the packages needed to recompute the snapshot
# and query build metadata in every build job.
- UVR_R_BIN=/opt/R/$R_VERSION/bin/R local/uvr-install.sh RPostgres s3fs data.table future jsonlite
- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS="-a"; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
- $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/$R_VERSION/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1
- |
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
for RBIN in /opt/R/[0-9]*/bin/R; do
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
RMINOR=$(echo "$RV" | cut -d. -f1-2)
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
echo "=== R-minor-sensitive pass under R $RV ==="
LIB="/mnt/cache/R-pkgs-$RMINOR"
mkdir -p "$LIB"
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/Rscript" local/install-bincraft.R || true
R_LIBS_USER="$LIB" UVR_R_BIN="$RBIN" local/uvr-install.sh RPostgres || true
R_LIBS_USER="$LIB" $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- "$(dirname "$RBIN")/Rscript" local/build-all.R --sensitive-only $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1 || true
# Also build current packages whose required dependency tree needs a newer R.
R_LIBS_USER="$LIB" $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- "$(dirname "$RBIN")/Rscript" local/build-newer-r.R "$R_VERSION" $SPLIT_INTO $SPLIT_INDEX
done
# archive missed packages; first arg is the codename (e.g. "alpine324"),
# derived via bincraft like the upload step, not paste(OS, OS_VERSION).
- /opt/R/$R_VERSION/bin/R -q -e "bincraft::process_unarchived_pkgs(bincraft::set_codename(NULL), Sys.getenv('ARCH'), s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), workers = $NCPUS)"
backend_options:
docker:
resources:
requests:
memory: 5Gi
cpu: 1000m
limits:
memory: 20Gi
cpu: 2000m
- name: 'Upload package indexes'
image: 'reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}'
pull: true
environment:
OTEL_R_TRACES_EXPORTER: none
OTEL_R_LOGS_EXPORTER: none
OTEL_R_METRICS_EXPORTER: none
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
R_LIBS_USER: /mnt/cache/R-pkgs
volumes:
- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
commands:
- |
CODENAME=$(/opt/R/$R_VERSION/bin/Rscript -e "cat(bincraft::set_codename(NULL))")
/opt/R/$R_VERSION/bin/R -q -e "bincraft::upload_package_index(codename = '$CODENAME', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))"
for RBIN in /opt/R/[0-9]*/bin/R; do
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
/opt/R/$R_VERSION/bin/R -q -e "bincraft::upload_package_index(codename = '$CODENAME', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
done
backend_options:
docker:
resources:
requests:
memory: 5Gi
cpu: 1000m
limits:
memory: 20Gi
cpu: 2000m

View file

@ -0,0 +1,80 @@
when:
- event: manual
evaluate: 'build == "r-minor"'
# - event: manual
# evaluate: 'build == "alpine-322-arm64"'
# - event: manual
# evaluate: 'build == "alpine-322-arm64-1"'
# - event: manual
# evaluate: 'build == "all-arm64"'
# skip_clone: true
# depends_on:
# - alpine-322-arm64-install-deps
matrix:
include:
- os: alpine
os_version: 3.21
r_version: 4.5.3
- os: alpine
os_version: 3.21
r_version: 4.4.3
# - os: alpine
# os_version: 3.21
# r_version: 4.3
steps:
- name: 'Build R-minor-sensitive binaries'
image: "docker.io/devxygmbh/rpkgs-build-env-${os}:${os_version}"
pull: true
environment:
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
# normal env vars
GIT_USER: pat-s
NTFY_SERVER:
from_secret: NTFY_SERVER
NTFY_TOPIC:
from_secret: NTFY_TOPIC
NTFY_AUTH: TRUE
NTFY_PASSWORD:
from_secret: ntfy_token
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /tmp/R-libs:/mnt/cache/R-pkgs
CCACHE_DIR: /mnt/cache/ccache
NCPUS: 2
STRATEGY: sequential
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-*
- mkdir -p /tmp/R-libs
- git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft && /opt/R/$R_VERSION/bin/R CMD INSTALL --library=/tmp/R-libs /tmp/bincraft && /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run)
- $XVFB -- /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); pkgs = bincraft::get_r_minor_sensitive_packages(r_minor_packages_issue_url = 'https://git.devxy.io/api/v1/repos/devxy/build-cran-binaries/issues/29'); foo = lapply(pkgs, function(x) bincraft::build_binary_package(x, is_debug = FALSE, is_r_minor_sensitive = TRUE, force = FALSE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE))" 2>&1
backend_options:
kubernetes:
resources:
requests:
memory: 5Gi
cpu: 1000m
limits:
memory: 20Gi
cpu: 2000m
tolerations:
- key: 'CI'
operator: 'Equal'
value: 'true'
effect: 'NoSchedule'

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@ -0,0 +1,91 @@
when:
- event: [cron]
cron: process-cran-updates-alpine-322-amd64
- event: manual
evaluate: 'process_cran_updates == "all"'
- event: manual
evaluate: 'process_cran_updates == "alpine-322-amd64"'
skip_clone: true
labels:
agent: artemis
steps:
- name: 'Processing Updates'
image: reg.devxy.io/rpkgs/build-env-alpine:3.22
pull: true
environment:
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
# normal env vars
GIT_USER: pat-s
NTFY_SERVER:
from_secret: NTFY_SERVER
NTFY_TOPIC:
from_secret: NTFY_TOPIC
NTFY_AUTH: TRUE
NTFY_PASSWORD:
from_secret: ntfy_token
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
R_VERSION: 4.5.3
CCACHE_DIR: /mnt/cache/ccache
PLATFORM: alpine-322
ARCH: amd64
NCPUS: 2
STRATEGY: sequential
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
# volumes:
# - amd64-binaries-r-dep-cache-alpine-322:/mnt/cache
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
backend_options:
kubernetes:
resources:
requests:
memory: 5Gi
cpu: 3000m
limits:
memory: 18Gi
cpu: 3000m
nodeSelector:
kubernetes.io/arch: amd64
node.kubernetes.io/instance-type: AX42
tolerations:
- key: 'CI'
operator: 'Equal'
value: 'true'
effect: 'NoSchedule'
- name: Purge CDN cache
image: reg.devxy.io/docker.io/library/alpine:3.23
environment:
BUNNYNET_API_KEY:
from_secret: BUNNYNET_API_KEY
SUBDOMAIN1: 'cran.devxy.io'
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
SUBDOMAIN3: 'cran.rpkgs.com'
OS_ID: alpine322
ARCH: amd64
commands:
- apk add --no-cache -q bash curl
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"

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when:
- event: [cron]
cron: process-cran-updates-alpine-322-arm64
- event: manual
evaluate: 'process_cran_updates == "all"'
- event: manual
evaluate: 'process_cran_updates == "alpine-322-arm64"'
skip_clone: true
labels:
agent: gaia
steps:
- name: 'Processing Updates'
image: reg.devxy.io/rpkgs/build-env-alpine:3.22
pull: true
environment:
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
# normal env vars
GIT_USER: pat-s
NTFY_SERVER:
from_secret: NTFY_SERVER
NTFY_TOPIC:
from_secret: NTFY_TOPIC
NTFY_AUTH: TRUE
NTFY_PASSWORD:
from_secret: ntfy_token
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
R_VERSION: 4.5.3
CCACHE_DIR: /mnt/cache/ccache
PLATFORM: alpine-322
ARCH: arm64
NCPUS: 2
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
# volumes:
# - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
- name: Purge CDN cache
image: reg.devxy.io/docker.io/library/alpine:3.23
environment:
BUNNYNET_API_KEY:
from_secret: BUNNYNET_API_KEY
SUBDOMAIN1: 'cran.devxy.io'
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
SUBDOMAIN3: 'cran.rpkgs.com'
OS_ID: alpine322
ARCH: arm64
commands:
- apk add --no-cache -q bash curl
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"

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when:
- event: [cron]
cron: process-cran-updates-alpine-323-amd64
- event: manual
evaluate: 'process_cran_updates == "all"'
- event: manual
evaluate: 'process_cran_updates == "alpine-323-amd64"'
skip_clone: true
labels:
agent: artemis
steps:
- name: 'Processing Updates'
image: reg.devxy.io/rpkgs/build-env-alpine:3.23
pull: true
environment:
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
# normal env vars
GIT_USER: pat-s
NTFY_SERVER:
from_secret: NTFY_SERVER
NTFY_TOPIC:
from_secret: NTFY_TOPIC
NTFY_AUTH: TRUE
NTFY_PASSWORD:
from_secret: ntfy_token
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
R_VERSION: 4.5.3
CCACHE_DIR: /mnt/cache/ccache
PLATFORM: alpine-323
ARCH: amd64
NCPUS: 2
STRATEGY: sequential
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
# volumes:
# - amd64-binaries-r-dep-cache-alpine-323:/mnt/cache
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
backend_options:
kubernetes:
resources:
requests:
memory: 5Gi
cpu: 3000m
limits:
memory: 18Gi
cpu: 3000m
nodeSelector:
kubernetes.io/arch: amd64
node.kubernetes.io/instance-type: AX42
tolerations:
- key: 'CI'
operator: 'Equal'
value: 'true'
effect: 'NoSchedule'
- name: Purge CDN cache
image: reg.devxy.io/docker.io/library/alpine:3.23
environment:
BUNNYNET_API_KEY:
from_secret: BUNNYNET_API_KEY
SUBDOMAIN1: 'cran.devxy.io'
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
SUBDOMAIN3: 'cran.rpkgs.com'
OS_ID: alpine323
ARCH: amd64
commands:
- apk add --no-cache -q bash curl
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"

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when:
- event: [cron]
cron: process-cran-updates-alpine-323-arm64
- event: manual
evaluate: 'process_cran_updates == "all"'
- event: manual
evaluate: 'process_cran_updates == "alpine-323-arm64"'
skip_clone: true
labels:
agent: gaia
steps:
- name: 'Processing Updates'
image: reg.devxy.io/rpkgs/build-env-alpine:3.23
pull: true
environment:
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
# normal env vars
GIT_USER: pat-s
NTFY_SERVER:
from_secret: NTFY_SERVER
NTFY_TOPIC:
from_secret: NTFY_TOPIC
NTFY_AUTH: TRUE
NTFY_PASSWORD:
from_secret: ntfy_token
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
R_VERSION: 4.5.3
CCACHE_DIR: /mnt/cache/ccache
PLATFORM: alpine-323
ARCH: arm64
NCPUS: 2
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
# volumes:
# - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
- name: Purge CDN cache
image: reg.devxy.io/docker.io/library/alpine:3.23
environment:
BUNNYNET_API_KEY:
from_secret: BUNNYNET_API_KEY
SUBDOMAIN1: 'cran.devxy.io'
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
SUBDOMAIN3: 'cran.rpkgs.com'
OS_ID: alpine323
ARCH: arm64
commands:
- apk add --no-cache -q bash curl
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"

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when:
- event: [cron]
cron: process-cran-updates-redhat-10-amd64
- event: manual
evaluate: 'process_cran_updates == "all"'
- event: manual
evaluate: 'process_cran_updates == "redhat-10-amd64"'
skip_clone: true
labels:
agent: artemis
steps:
- name: 'Processing Updates'
image: reg.devxy.io/rpkgs/build-env-redhat:10
pull: true
environment:
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
# normal env vars
GIT_USER: pat-s
NTFY_SERVER:
from_secret: NTFY_SERVER
NTFY_TOPIC:
from_secret: NTFY_TOPIC
NTFY_AUTH: TRUE
NTFY_PASSWORD:
from_secret: ntfy_token
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
R_VERSION: 4.5.3
CCACHE_DIR: /mnt/cache/ccache
PLATFORM: redhat-10
ARCH: amd64
NCPUS: 2
MEMORY: 18Gi
STRATEGY: sequential
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
# volumes:
# - amd64-binaries-r-dep-cache-redhat-10:/mnt/cache
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
- $XVFB $XVFB_ARGS -- /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-10', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel10", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
backend_options:
kubernetes:
resources:
requests:
memory: 5Gi
cpu: 3000m
limits:
memory: 18Gi
cpu: 3000m
nodeSelector:
kubernetes.io/arch: amd64
node.kubernetes.io/instance-type: AX42
tolerations:
- key: 'CI'
operator: 'Equal'
value: 'true'
effect: 'NoSchedule'
- name: Purge CDN cache
image: reg.devxy.io/docker.io/library/alpine:3.23
environment:
BUNNYNET_API_KEY:
from_secret: BUNNYNET_API_KEY
SUBDOMAIN1: 'cran.devxy.io'
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
SUBDOMAIN3: 'cran.rpkgs.com'
OS_ID: rhel10
ARCH: amd64
commands:
- apk add --no-cache -q bash curl
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"

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when:
- event: [cron]
cron: process-cran-updates-redhat-10-arm64
- event: manual
evaluate: 'process_cran_updates == "all"'
- event: manual
evaluate: 'process_cran_updates == "redhat-10-arm64"'
skip_clone: true
labels:
agent: gaia
steps:
- name: 'Processing Updates'
image: reg.devxy.io/rpkgs/build-env-redhat:10
pull: true
environment:
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
# normal env vars
GIT_USER: pat-s
NTFY_SERVER:
from_secret: NTFY_SERVER
NTFY_TOPIC:
from_secret: NTFY_TOPIC
NTFY_AUTH: TRUE
NTFY_PASSWORD:
from_secret: ntfy_token
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
R_VERSION: 4.5.3
CCACHE_DIR: /mnt/cache/ccache
PLATFORM: redhat-10
ARCH: arm64
NCPUS: 2
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
# volumes:
# - arm64-binaries-r-dep-cache-redhat-10:/mnt/cache
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
- $XVFB $XVFB_ARGS -- /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-10', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel10", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
- name: Purge CDN cache
image: reg.devxy.io/docker.io/library/alpine:3.23
environment:
BUNNYNET_API_KEY:
from_secret: BUNNYNET_API_KEY
SUBDOMAIN1: 'cran.devxy.io'
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
SUBDOMAIN3: 'cran.rpkgs.com'
OS_ID: rhel10
ARCH: arm64
commands:
- apk add --no-cache -q bash curl
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"

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when:
- event: [cron]
cron: process-cran-updates-redhat-8-amd64
- event: manual
evaluate: 'process_cran_updates == "all"'
- event: manual
evaluate: 'process_cran_updates == "redhat-8-amd64"'
skip_clone: true
labels:
agent: artemis
steps:
- name: 'Processing Updates'
image: reg.devxy.io/rpkgs/build-env-redhat:8
pull: true
environment:
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
# normal env vars
GIT_USER: pat-s
NTFY_SERVER:
from_secret: NTFY_SERVER
NTFY_TOPIC:
from_secret: NTFY_TOPIC
NTFY_AUTH: TRUE
NTFY_PASSWORD:
from_secret: ntfy_token
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
R_VERSION: 4.4.3
CCACHE_DIR: /mnt/cache/ccache
PLATFORM: redhat-8
ARCH: amd64
NCPUS: 2
STRATEGY: sequential
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
# volumes:
# - amd64-binaries-r-dep-cache-redhat-8:/mnt/cache
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel8", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
backend_options:
kubernetes:
resources:
requests:
memory: 5Gi
cpu: 3000m
limits:
memory: 18Gi
cpu: 3000m
nodeSelector:
kubernetes.io/arch: amd64
node.kubernetes.io/instance-type: AX42
tolerations:
- key: 'CI'
operator: 'Equal'
value: 'true'
effect: 'NoSchedule'
- name: Purge CDN cache
image: reg.devxy.io/docker.io/library/alpine:3.23
environment:
BUNNYNET_API_KEY:
from_secret: BUNNYNET_API_KEY
SUBDOMAIN1: 'cran.devxy.io'
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
SUBDOMAIN3: 'cran.rpkgs.com'
OS_ID: rhel8
ARCH: amd64
commands:
- apk add --no-cache -q bash curl
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"

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when:
- event: [cron]
cron: process-cran-updates-redhat-8-arm64
- event: manual
evaluate: 'process_cran_updates == "all"'
- event: manual
evaluate: 'process_cran_updates == "redhat-8-arm64"'
skip_clone: true
labels:
agent: gaia
steps:
- name: 'Processing Updates'
image: reg.devxy.io/rpkgs/build-env-redhat:8
pull: true
environment:
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
# normal env vars
GIT_USER: pat-s
NTFY_SERVER:
from_secret: NTFY_SERVER
NTFY_TOPIC:
from_secret: NTFY_TOPIC
NTFY_AUTH: TRUE
NTFY_PASSWORD:
from_secret: ntfy_token
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
R_VERSION: 4.4.3
CCACHE_DIR: /mnt/cache/ccache
PLATFORM: redhat-8
ARCH: arm64
NCPUS: 2
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
# volumes:
# - arm64-binaries-r-dep-cache-redhat-8:/mnt/cache
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel8", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
- name: Purge CDN cache
image: reg.devxy.io/docker.io/library/alpine:3.23
environment:
BUNNYNET_API_KEY:
from_secret: BUNNYNET_API_KEY
SUBDOMAIN1: 'cran.devxy.io'
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
SUBDOMAIN3: 'cran.rpkgs.com'
OS_ID: rhel8
ARCH: arm64
commands:
- apk add --no-cache -q bash curl
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"

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@ -0,0 +1,92 @@
when:
- event: [cron]
cron: process-cran-updates-redhat-9-amd64
- event: manual
evaluate: 'process_cran_updates == "all"'
- event: manual
evaluate: 'process_cran_updates == "redhat-9-amd64"'
skip_clone: true
labels:
agent: artemis
steps:
- name: 'Processing Updates'
image: reg.devxy.io/rpkgs/build-env-redhat:9
pull: true
environment:
RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
# normal env vars
GIT_USER: pat-s
NTFY_SERVER:
from_secret: NTFY_SERVER
NTFY_TOPIC:
from_secret: NTFY_TOPIC
NTFY_AUTH: TRUE
NTFY_PASSWORD:
from_secret: ntfy_token
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
R_VERSION: 4.4.3
CCACHE_DIR: /mnt/cache/ccache
PLATFORM: redhat-9
ARCH: amd64
NCPUS: 2
MEMORY: 18Gi
STRATEGY: sequential
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
# volumes:
# - amd64-binaries-r-dep-cache-redhat-9:/mnt/cache
commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.1.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.1.0")'
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
backend_options:
kubernetes:
resources:
requests:
memory: 5Gi
cpu: 3000m
limits:
memory: 18Gi
cpu: 3000m
nodeSelector:
kubernetes.io/arch: amd64
node.kubernetes.io/instance-type: AX42
tolerations:
- key: 'CI'
operator: 'Equal'
value: 'true'
effect: 'NoSchedule'
- name: Purge CDN cache
image: reg.devxy.io/docker.io/library/alpine:3.23
environment:
BUNNYNET_API_KEY:
from_secret: BUNNYNET_API_KEY
SUBDOMAIN1: 'cran.devxy.io'
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
SUBDOMAIN3: 'cran.rpkgs.com'
OS_ID: rhel9
ARCH: amd64
commands:
- apk add --no-cache -q bash curl
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"

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