From 6403ad602fef03eb77a0cf6ef056986488b9a23b Mon Sep 17 00:00:00 2001 From: pat-s Date: Mon, 25 May 2026 22:27:35 +0200 Subject: [PATCH 01/10] refactor(ci): use multi-R-version images in build-all-versions workflows Drop -${R_VERSION} from the image tag and invoke R/Rscript via the explicit /opt/R/${R_VERSION}/bin/ path. --- .crow/build-all-versions-amd64.yaml | 6 +++--- .crow/build-all-versions-arm64.yaml | 6 +++--- .crow/build-all-versions-install-deps-amd64.yaml | 6 +++--- .crow/build-all-versions-install-deps-arm64.yaml | 6 +++--- 4 files changed, 12 insertions(+), 12 deletions(-) diff --git a/.crow/build-all-versions-amd64.yaml b/.crow/build-all-versions-amd64.yaml index 4c10387..e5590fb 100644 --- a/.crow/build-all-versions-amd64.yaml +++ b/.crow/build-all-versions-amd64.yaml @@ -39,7 +39,7 @@ depends_on: steps: - name: 'Build binaries' - image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION} + image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION} pull: true environment: RED_HAT_DEV_PW: @@ -69,9 +69,9 @@ steps: # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'rFUSION', 'MediaNews' # pkgs = readRDS('/mnt/cache/pkgs_amd64.rds'); - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1 + - $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/${R_VERSION}/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1 # archive missed packages - - R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)" + - /opt/R/${R_VERSION}/bin/R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)" backend_options: docker: resources: diff --git a/.crow/build-all-versions-arm64.yaml b/.crow/build-all-versions-arm64.yaml index eb1a5c2..2829bc9 100644 --- a/.crow/build-all-versions-arm64.yaml +++ b/.crow/build-all-versions-arm64.yaml @@ -54,7 +54,7 @@ depends_on: steps: - name: 'Build binaries' - image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION} + image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION} pull: true environment: RED_HAT_DEV_PW: @@ -82,9 +82,9 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1 + - $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/${R_VERSION}/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1 # archive missed packages - - R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)" + - /opt/R/${R_VERSION}/bin/R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)" backend_options: docker: resources: diff --git a/.crow/build-all-versions-install-deps-amd64.yaml b/.crow/build-all-versions-install-deps-amd64.yaml index c41789f..f3d61f0 100644 --- a/.crow/build-all-versions-install-deps-amd64.yaml +++ b/.crow/build-all-versions-install-deps-amd64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Install deps and bincraft' - image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION} + image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION} pull: true environment: REPO_RO_TOKEN: @@ -34,8 +34,8 @@ steps: - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft - - R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")' - - R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s package versions to build', nrow(pkgs))" + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s package versions to build', nrow(pkgs))" backend_options: docker: resources: diff --git a/.crow/build-all-versions-install-deps-arm64.yaml b/.crow/build-all-versions-install-deps-arm64.yaml index dbd1df3..e6e65ec 100644 --- a/.crow/build-all-versions-install-deps-arm64.yaml +++ b/.crow/build-all-versions-install-deps-arm64.yaml @@ -9,7 +9,7 @@ labels: steps: - name: 'Install deps and bincraft' - image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION} + image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION} pull: true environment: REPO_RO_TOKEN: @@ -33,8 +33,8 @@ steps: - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft - - R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")' - - R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s package versions to build', nrow(pkgs))" + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s package versions to build', nrow(pkgs))" backend_options: docker: resources: From 5e50f2a6a0d0a03f29313c2656e2b904635ca17a Mon Sep 17 00:00:00 2001 From: pat-s Date: Mon, 25 May 2026 22:31:02 +0200 Subject: [PATCH 02/10] docs(ci): correct R_VERSION header annotation to full patch Header comments described R_VERSION as (4.5) but the new multi-R-version images only ship full-patch paths (/opt/R/4.5.3/bin/R), so the minor-form annotation is misleading. The example pipeline-create lines below the annotation already use 4.5.3 correctly. --- .crow/build-all-versions-amd64.yaml | 2 +- .crow/build-all-versions-arm64.yaml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.crow/build-all-versions-amd64.yaml b/.crow/build-all-versions-amd64.yaml index e5590fb..2766243 100644 --- a/.crow/build-all-versions-amd64.yaml +++ b/.crow/build-all-versions-amd64.yaml @@ -2,7 +2,7 @@ # ARCH (amd64) # OS (alpine) # OS_VERSION (3.22) -# R_VERSION (4.5) +# R_VERSION (4.5.3) # crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5 # crow pipeline create --var ARCH=arm64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5 # crow pipeline create --var ARCH=amd64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-amd64 --branch=main --log-level=info 5 diff --git a/.crow/build-all-versions-arm64.yaml b/.crow/build-all-versions-arm64.yaml index 2829bc9..8de103d 100644 --- a/.crow/build-all-versions-arm64.yaml +++ b/.crow/build-all-versions-arm64.yaml @@ -2,7 +2,7 @@ # ARCH (amd64) # OS (alpine) # OS_VERSION (3.22) -# R_VERSION (4.5) +# R_VERSION (4.5.3) # echo "c('RInno','KeyboardSimulator','R2PPT','RWinEdt','blatr','excel.link','spectrino','taskscheduleR','MDSGUI','BiplotGUI','R2wd','rFUSION','MediaNews','doBy','IDPmisc','frailtypack','afex','FrF2','DoE.base','agricolae','doFuture','fscaret','PHYLOGR','seewave','pls','relaimpo','geepack','gggenes','NPCirc','repmis','PNDSIBGE','lidR','poismf','neonstore','MachineShop','mvst','MacBehaviour','mcmcderive','RGIFT','KnowBR','netmeta','spdep','sf','Rfast','compareGroups','ff','GsymPoint','RcppDynProg','comtradr','RcppDynProg','FD','PearsonDS','DCluster','gRc','mixlm','geospt','fdth','ffmanova','fiery','ffscrapr','cold','fiery','RcmdrPlugin.DoE','RcmdrPlugin.NMBU')" | base64 # crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.22 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --var SKIP_PKGS=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 --log-level=info 7 # crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --log-level=info 5 From 71893f6f19f73cac1cff320b445b3f9cbf0eddd8 Mon Sep 17 00:00:00 2001 From: pat-s Date: Mon, 25 May 2026 22:35:32 +0200 Subject: [PATCH 03/10] refactor(ci): use multi-R-version images in process-updates workflows Drop the R-version suffix from each image tag, add an explicit R_VERSION env var per file, and invoke R via /opt/R/${R_VERSION}/bin/R at every call site. Also aligns ubuntu-2404 process-updates from R 4.4 to R 4.4.3, matching the audit and rebuild counterparts. --- .crow/process-updates-alpine-322-amd64.yaml | 11 ++++++----- .crow/process-updates-alpine-322-arm64.yaml | 11 ++++++----- .crow/process-updates-alpine-323-amd64.yaml | 11 ++++++----- .crow/process-updates-alpine-323-arm64.yaml | 11 ++++++----- .crow/process-updates-redhat-10-amd64.yaml | 11 ++++++----- .crow/process-updates-redhat-10-arm64.yaml | 11 ++++++----- .crow/process-updates-redhat-8-amd64.yaml | 11 ++++++----- .crow/process-updates-redhat-8-arm64.yaml | 11 ++++++----- .crow/process-updates-redhat-9-amd64.yaml | 11 ++++++----- .crow/process-updates-redhat-9-arm64.yaml | 11 ++++++----- .crow/process-updates-ubuntu-2204-amd64.yaml | 11 ++++++----- .crow/process-updates-ubuntu-2204-arm64.yaml | 11 ++++++----- .crow/process-updates-ubuntu-2404-amd64.yaml | 11 ++++++----- .crow/process-updates-ubuntu-2404-arm64.yaml | 11 ++++++----- 14 files changed, 84 insertions(+), 70 deletions(-) diff --git a/.crow/process-updates-alpine-322-amd64.yaml b/.crow/process-updates-alpine-322-amd64.yaml index ed39ccc..cccbf0b 100644 --- a/.crow/process-updates-alpine-322-amd64.yaml +++ b/.crow/process-updates-alpine-322-amd64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-alpine:3.22-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.22 pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: alpine-322 ARCH: amd64 @@ -51,12 +52,12 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - xvfb-run /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/process-updates-alpine-322-arm64.yaml b/.crow/process-updates-alpine-322-arm64.yaml index 57d3891..40048cb 100644 --- a/.crow/process-updates-alpine-322-arm64.yaml +++ b/.crow/process-updates-alpine-322-arm64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-alpine:3.22-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.22 pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: alpine-322 ARCH: arm64 @@ -50,9 +51,9 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - xvfb-run /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' diff --git a/.crow/process-updates-alpine-323-amd64.yaml b/.crow/process-updates-alpine-323-amd64.yaml index 2855545..8de26d6 100644 --- a/.crow/process-updates-alpine-323-amd64.yaml +++ b/.crow/process-updates-alpine-323-amd64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-alpine:3.23-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.23 pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: alpine-323 ARCH: amd64 @@ -51,12 +52,12 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - xvfb-run /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/process-updates-alpine-323-arm64.yaml b/.crow/process-updates-alpine-323-arm64.yaml index 7c0debe..41f6896 100644 --- a/.crow/process-updates-alpine-323-arm64.yaml +++ b/.crow/process-updates-alpine-323-arm64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-alpine:3.23-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.23 pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: alpine-323 ARCH: arm64 @@ -50,11 +51,11 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - xvfb-run /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' diff --git a/.crow/process-updates-redhat-10-amd64.yaml b/.crow/process-updates-redhat-10-amd64.yaml index 551895e..7746cc6 100644 --- a/.crow/process-updates-redhat-10-amd64.yaml +++ b/.crow/process-updates-redhat-10-amd64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-redhat:10-4.5.3 + image: reg.devxy.io/rpkgs/build-env-redhat:10 pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: redhat-10 ARCH: amd64 @@ -52,13 +53,13 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - $XVFB $XVFB_ARGS -- R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-10', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-10', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/process-updates-redhat-10-arm64.yaml b/.crow/process-updates-redhat-10-arm64.yaml index 2c72c28..7e65e36 100644 --- a/.crow/process-updates-redhat-10-arm64.yaml +++ b/.crow/process-updates-redhat-10-arm64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-redhat:10-4.5.3 + image: reg.devxy.io/rpkgs/build-env-redhat:10 pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: redhat-10 ARCH: arm64 @@ -50,10 +51,10 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - $XVFB $XVFB_ARGS -- R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-10', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-10', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' diff --git a/.crow/process-updates-redhat-8-amd64.yaml b/.crow/process-updates-redhat-8-amd64.yaml index 9cb929d..0119302 100644 --- a/.crow/process-updates-redhat-8-amd64.yaml +++ b/.crow/process-updates-redhat-8-amd64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-redhat:8-4.4.3 + image: reg.devxy.io/rpkgs/build-env-redhat:8 pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: redhat-8 ARCH: amd64 @@ -51,12 +52,12 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "rhel8", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - xvfb-run /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel8", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/process-updates-redhat-8-arm64.yaml b/.crow/process-updates-redhat-8-arm64.yaml index ae86e95..28f52ba 100644 --- a/.crow/process-updates-redhat-8-arm64.yaml +++ b/.crow/process-updates-redhat-8-arm64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-redhat:8-4.4.3 + image: reg.devxy.io/rpkgs/build-env-redhat:8 pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: redhat-8 ARCH: arm64 @@ -50,11 +51,11 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "rhel8", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - xvfb-run /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel8", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' diff --git a/.crow/process-updates-redhat-9-amd64.yaml b/.crow/process-updates-redhat-9-amd64.yaml index 520a7e0..961658f 100644 --- a/.crow/process-updates-redhat-9-amd64.yaml +++ b/.crow/process-updates-redhat-9-amd64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-redhat:9-4.4.3 + image: reg.devxy.io/rpkgs/build-env-redhat:9 pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: redhat-9 ARCH: amd64 @@ -52,12 +53,12 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - xvfb-run /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/process-updates-redhat-9-arm64.yaml b/.crow/process-updates-redhat-9-arm64.yaml index 84268eb..fb90a46 100644 --- a/.crow/process-updates-redhat-9-arm64.yaml +++ b/.crow/process-updates-redhat-9-arm64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-redhat:9-4.4.3 + image: reg.devxy.io/rpkgs/build-env-redhat:9 pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: redhat-9 ARCH: arm64 @@ -50,11 +51,11 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - xvfb-run /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' diff --git a/.crow/process-updates-ubuntu-2204-amd64.yaml b/.crow/process-updates-ubuntu-2204-amd64.yaml index aeed362..5f81b1a 100644 --- a/.crow/process-updates-ubuntu-2204-amd64.yaml +++ b/.crow/process-updates-ubuntu-2204-amd64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy-4.4.3 + image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: ubuntu-2204 ARCH: amd64 @@ -52,12 +53,12 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2204', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "jammy", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - xvfb-run /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2204', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "jammy", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/process-updates-ubuntu-2204-arm64.yaml b/.crow/process-updates-ubuntu-2204-arm64.yaml index c25fbb9..479d299 100644 --- a/.crow/process-updates-ubuntu-2204-arm64.yaml +++ b/.crow/process-updates-ubuntu-2204-arm64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy-4.4.3 + image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: ubuntu-2204 ARCH: arm64 @@ -50,11 +51,11 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2204', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "jammy", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - xvfb-run /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2204', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "jammy", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' diff --git a/.crow/process-updates-ubuntu-2404-amd64.yaml b/.crow/process-updates-ubuntu-2404-amd64.yaml index 268db50..9250cad 100644 --- a/.crow/process-updates-ubuntu-2404-amd64.yaml +++ b/.crow/process-updates-ubuntu-2404-amd64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-ubuntu:noble pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: ubuntu-2404 ARCH: amd64 @@ -51,12 +52,12 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2404', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "noble", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - xvfb-run /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2404', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "noble", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/process-updates-ubuntu-2404-arm64.yaml b/.crow/process-updates-ubuntu-2404-arm64.yaml index b926c19..1ad0fc1 100644 --- a/.crow/process-updates-ubuntu-2404-arm64.yaml +++ b/.crow/process-updates-ubuntu-2404-arm64.yaml @@ -13,7 +13,7 @@ labels: steps: - name: 'Processing Updates' - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-ubuntu:noble pull: true environment: RED_HAT_DEV_PW: @@ -40,6 +40,7 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: ubuntu-2404 ARCH: arm64 @@ -50,11 +51,11 @@ steps: commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraft /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/00LOCK-pak/mnt/cache/R-pkgs/00LOCK-RPostgres /mnt/cache/R-pkgs/bincraft - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2404', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - - R -q -e 'library(bincraft); upload_package_index(codename = "noble", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - xvfb-run /opt/R/${R_VERSION}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2404', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + - /opt/R/${R_VERSION}/bin/R -q -e 'library(bincraft); upload_package_index(codename = "noble", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' From adfb2d4a8765c3c354157baf211bd7f1e8de3745 Mon Sep 17 00:00:00 2001 From: pat-s Date: Mon, 25 May 2026 22:42:09 +0200 Subject: [PATCH 04/10] refactor(ci): use multi-R-version images in weekly-rebuild-missing workflows Drop the R-version suffix from each image tag, add an explicit R_VERSION env var per file, and invoke R via /opt/R/${R_VERSION}/bin/R at every call site. --- .crow/weekly-rebuild-missing-alpine-322-amd64.yaml | 13 +++++++------ .crow/weekly-rebuild-missing-alpine-322-arm64.yaml | 13 +++++++------ .crow/weekly-rebuild-missing-alpine-323-amd64.yaml | 13 +++++++------ .crow/weekly-rebuild-missing-alpine-323-arm64.yaml | 13 +++++++------ .crow/weekly-rebuild-missing-redhat-10-amd64.yaml | 13 +++++++------ .crow/weekly-rebuild-missing-redhat-10-arm64.yaml | 13 +++++++------ .crow/weekly-rebuild-missing-redhat-8-amd64.yaml | 13 +++++++------ .crow/weekly-rebuild-missing-redhat-8-arm64.yaml | 13 +++++++------ .crow/weekly-rebuild-missing-redhat-9-amd64.yaml | 13 +++++++------ .crow/weekly-rebuild-missing-redhat-9-arm64.yaml | 13 +++++++------ .crow/weekly-rebuild-missing-ubuntu-2204-amd64.yaml | 13 +++++++------ .crow/weekly-rebuild-missing-ubuntu-2204-arm64.yaml | 13 +++++++------ .crow/weekly-rebuild-missing-ubuntu-2404-amd64.yaml | 13 +++++++------ .crow/weekly-rebuild-missing-ubuntu-2404-arm64.yaml | 13 +++++++------ 14 files changed, 98 insertions(+), 84 deletions(-) diff --git a/.crow/weekly-rebuild-missing-alpine-322-amd64.yaml b/.crow/weekly-rebuild-missing-alpine-322-amd64.yaml index 86f0680..18843a9 100644 --- a/.crow/weekly-rebuild-missing-alpine-322-amd64.yaml +++ b/.crow/weekly-rebuild-missing-alpine-322-amd64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-alpine:3.22-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.22 pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: alpine-322 ARCH: amd64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: diff --git a/.crow/weekly-rebuild-missing-alpine-322-arm64.yaml b/.crow/weekly-rebuild-missing-alpine-322-arm64.yaml index c985d1e..6bd7a9b 100644 --- a/.crow/weekly-rebuild-missing-alpine-322-arm64.yaml +++ b/.crow/weekly-rebuild-missing-alpine-322-arm64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-alpine:3.22-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.22 pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: alpine-322 ARCH: arm64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: diff --git a/.crow/weekly-rebuild-missing-alpine-323-amd64.yaml b/.crow/weekly-rebuild-missing-alpine-323-amd64.yaml index 1b40307..a597143 100644 --- a/.crow/weekly-rebuild-missing-alpine-323-amd64.yaml +++ b/.crow/weekly-rebuild-missing-alpine-323-amd64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-alpine:3.23-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.23 pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: alpine-323 ARCH: amd64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: diff --git a/.crow/weekly-rebuild-missing-alpine-323-arm64.yaml b/.crow/weekly-rebuild-missing-alpine-323-arm64.yaml index b76b3c8..47a073a 100644 --- a/.crow/weekly-rebuild-missing-alpine-323-arm64.yaml +++ b/.crow/weekly-rebuild-missing-alpine-323-arm64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-alpine:3.23-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.23 pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: alpine-323 ARCH: arm64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: diff --git a/.crow/weekly-rebuild-missing-redhat-10-amd64.yaml b/.crow/weekly-rebuild-missing-redhat-10-amd64.yaml index cfe3d01..4335e7f 100644 --- a/.crow/weekly-rebuild-missing-redhat-10-amd64.yaml +++ b/.crow/weekly-rebuild-missing-redhat-10-amd64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-redhat:10-4.5.3 + image: reg.devxy.io/rpkgs/build-env-redhat:10 pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: redhat-10 ARCH: amd64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: diff --git a/.crow/weekly-rebuild-missing-redhat-10-arm64.yaml b/.crow/weekly-rebuild-missing-redhat-10-arm64.yaml index 89d7c45..e0ee2ee 100644 --- a/.crow/weekly-rebuild-missing-redhat-10-arm64.yaml +++ b/.crow/weekly-rebuild-missing-redhat-10-arm64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-redhat:10-4.5.3 + image: reg.devxy.io/rpkgs/build-env-redhat:10 pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: redhat-10 ARCH: arm64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: diff --git a/.crow/weekly-rebuild-missing-redhat-8-amd64.yaml b/.crow/weekly-rebuild-missing-redhat-8-amd64.yaml index 62d11b3..68bff14 100644 --- a/.crow/weekly-rebuild-missing-redhat-8-amd64.yaml +++ b/.crow/weekly-rebuild-missing-redhat-8-amd64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-redhat:8-4.4.3 + image: reg.devxy.io/rpkgs/build-env-redhat:8 pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: redhat-8 ARCH: amd64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: diff --git a/.crow/weekly-rebuild-missing-redhat-8-arm64.yaml b/.crow/weekly-rebuild-missing-redhat-8-arm64.yaml index 2194fee..f7fe7e9 100644 --- a/.crow/weekly-rebuild-missing-redhat-8-arm64.yaml +++ b/.crow/weekly-rebuild-missing-redhat-8-arm64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-redhat:8-4.4.3 + image: reg.devxy.io/rpkgs/build-env-redhat:8 pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: redhat-8 ARCH: arm64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: diff --git a/.crow/weekly-rebuild-missing-redhat-9-amd64.yaml b/.crow/weekly-rebuild-missing-redhat-9-amd64.yaml index 4c7f404..fbdfcc3 100644 --- a/.crow/weekly-rebuild-missing-redhat-9-amd64.yaml +++ b/.crow/weekly-rebuild-missing-redhat-9-amd64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-redhat:9-4.4.3 + image: reg.devxy.io/rpkgs/build-env-redhat:9 pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: redhat-9 ARCH: amd64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: diff --git a/.crow/weekly-rebuild-missing-redhat-9-arm64.yaml b/.crow/weekly-rebuild-missing-redhat-9-arm64.yaml index 64cf358..92fd2fa 100644 --- a/.crow/weekly-rebuild-missing-redhat-9-arm64.yaml +++ b/.crow/weekly-rebuild-missing-redhat-9-arm64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-redhat:9-4.4.3 + image: reg.devxy.io/rpkgs/build-env-redhat:9 pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: redhat-9 ARCH: arm64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: diff --git a/.crow/weekly-rebuild-missing-ubuntu-2204-amd64.yaml b/.crow/weekly-rebuild-missing-ubuntu-2204-amd64.yaml index 94cdc34..c7bc6f7 100644 --- a/.crow/weekly-rebuild-missing-ubuntu-2204-amd64.yaml +++ b/.crow/weekly-rebuild-missing-ubuntu-2204-amd64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy-4.4.3 + image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: ubuntu-2204 ARCH: amd64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: diff --git a/.crow/weekly-rebuild-missing-ubuntu-2204-arm64.yaml b/.crow/weekly-rebuild-missing-ubuntu-2204-arm64.yaml index c8305a6..5d958d5 100644 --- a/.crow/weekly-rebuild-missing-ubuntu-2204-arm64.yaml +++ b/.crow/weekly-rebuild-missing-ubuntu-2204-arm64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy-4.4.3 + image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: ubuntu-2204 ARCH: arm64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: diff --git a/.crow/weekly-rebuild-missing-ubuntu-2404-amd64.yaml b/.crow/weekly-rebuild-missing-ubuntu-2404-amd64.yaml index 7da31a0..b508b85 100644 --- a/.crow/weekly-rebuild-missing-ubuntu-2404-amd64.yaml +++ b/.crow/weekly-rebuild-missing-ubuntu-2404-amd64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4.3 + image: reg.devxy.io/rpkgs/build-env-ubuntu:noble pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: ubuntu-2404 ARCH: amd64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: diff --git a/.crow/weekly-rebuild-missing-ubuntu-2404-arm64.yaml b/.crow/weekly-rebuild-missing-ubuntu-2404-arm64.yaml index 5bd25c7..063fa3c 100644 --- a/.crow/weekly-rebuild-missing-ubuntu-2404-arm64.yaml +++ b/.crow/weekly-rebuild-missing-ubuntu-2404-arm64.yaml @@ -10,7 +10,7 @@ labels: steps: - name: 'Rebuild missing binaries' - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4.3 + image: reg.devxy.io/rpkgs/build-env-ubuntu:noble pull: true environment: RED_HAT_DEV_PW: @@ -30,6 +30,7 @@ steps: GIT_USER: pat-s R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 CCACHE_DIR: /mnt/cache/ccache PLATFORM: ubuntu-2404 ARCH: arm64 @@ -38,12 +39,12 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi - - R -q -e 'pak::pak("httr2")' - - R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' - - $XVFB $XVFB_ARGS -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("httr2")' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/fetch-rebuild-packages-from-issue.R")' + - $XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs <- readLines('/tmp/rebuild_pkgs.txt'); if (length(pkgs) == 0) { cat('Nothing to rebuild\n'); q('no') }; excluded <- jsonlite::fromJSON('local/excluded-packages.json')[['package']]; pkgs <- setdiff(pkgs, excluded); cat(sprintf('Rebuilding %d packages\n', length(pkgs))); n <- length(pkgs); for (i in seq_along(pkgs)) { x <- pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); tryCatch(bincraft::build_binary_package(x, tag_limit = 1L, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE), error = function(e) cat(sprintf('ERROR building %s - %s\n', x, conditionMessage(e)))) }" 2>&1 backend_options: kubernetes: resources: From 816b99cfaf2ac3289397bb964629c9141b423dad Mon Sep 17 00:00:00 2001 From: pat-s Date: Mon, 25 May 2026 22:48:35 +0200 Subject: [PATCH 05/10] refactor(ci): use multi-R-version images in weekly-audit-missing workflows MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Drop the R-version suffix from each image tag, add an explicit R_VERSION env var per file, and invoke R via /opt/R/${R_VERSION}/bin/R at every call site. Also fixes the alpine-322 audit image, which was previously pointing at alpine:3.23 instead of alpine:3.22. The alpine-321 audits stay on alpine:3.23 since no 3.21 image exists in the new scheme — they only query S3/CRAN, so the container OS does not affect correctness. --- .crow/weekly-audit-missing-alpine-321-amd64.yaml | 7 ++++--- .crow/weekly-audit-missing-alpine-321-arm64.yaml | 7 ++++--- .crow/weekly-audit-missing-alpine-322-amd64.yaml | 7 ++++--- .crow/weekly-audit-missing-alpine-322-arm64.yaml | 7 ++++--- .crow/weekly-audit-missing-alpine-323-amd64.yaml | 7 ++++--- .crow/weekly-audit-missing-alpine-323-arm64.yaml | 7 ++++--- .crow/weekly-audit-missing-redhat-10-amd64.yaml | 7 ++++--- .crow/weekly-audit-missing-redhat-10-arm64.yaml | 7 ++++--- .crow/weekly-audit-missing-redhat-8-amd64.yaml | 7 ++++--- .crow/weekly-audit-missing-redhat-8-arm64.yaml | 7 ++++--- .crow/weekly-audit-missing-redhat-9-amd64.yaml | 7 ++++--- .crow/weekly-audit-missing-redhat-9-arm64.yaml | 7 ++++--- .crow/weekly-audit-missing-ubuntu-2204-amd64.yaml | 7 ++++--- .crow/weekly-audit-missing-ubuntu-2204-arm64.yaml | 7 ++++--- .crow/weekly-audit-missing-ubuntu-2404-amd64.yaml | 7 ++++--- .crow/weekly-audit-missing-ubuntu-2404-arm64.yaml | 7 ++++--- 16 files changed, 64 insertions(+), 48 deletions(-) diff --git a/.crow/weekly-audit-missing-alpine-321-amd64.yaml b/.crow/weekly-audit-missing-alpine-321-amd64.yaml index 77b29a4..6a6ac56 100644 --- a/.crow/weekly-audit-missing-alpine-321-amd64.yaml +++ b/.crow/weekly-audit-missing-alpine-321-amd64.yaml @@ -8,7 +8,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-alpine:3.23-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.23 pull: true environment: B2_S3_ACCESS_KEY: @@ -27,12 +27,13 @@ steps: PLATFORM: alpine-321 ARCH: amd64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-alpine-321-arm64.yaml b/.crow/weekly-audit-missing-alpine-321-arm64.yaml index 80ca905..13a9baf 100644 --- a/.crow/weekly-audit-missing-alpine-321-arm64.yaml +++ b/.crow/weekly-audit-missing-alpine-321-arm64.yaml @@ -8,7 +8,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-alpine:3.23-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.23 pull: true environment: B2_S3_ACCESS_KEY: @@ -27,12 +27,13 @@ steps: PLATFORM: alpine-321 ARCH: arm64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-alpine-322-amd64.yaml b/.crow/weekly-audit-missing-alpine-322-amd64.yaml index b3f9ba8..d1255ea 100644 --- a/.crow/weekly-audit-missing-alpine-322-amd64.yaml +++ b/.crow/weekly-audit-missing-alpine-322-amd64.yaml @@ -7,7 +7,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-alpine:3.23-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.22 pull: true environment: B2_S3_ACCESS_KEY: @@ -26,12 +26,13 @@ steps: PLATFORM: alpine-322 ARCH: amd64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-alpine-322-arm64.yaml b/.crow/weekly-audit-missing-alpine-322-arm64.yaml index 1815163..b23eaee 100644 --- a/.crow/weekly-audit-missing-alpine-322-arm64.yaml +++ b/.crow/weekly-audit-missing-alpine-322-arm64.yaml @@ -7,7 +7,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-alpine:3.23-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.22 pull: true environment: B2_S3_ACCESS_KEY: @@ -25,12 +25,13 @@ steps: PLATFORM: alpine-322 ARCH: arm64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-alpine-323-amd64.yaml b/.crow/weekly-audit-missing-alpine-323-amd64.yaml index 3ef9715..8b0c80b 100644 --- a/.crow/weekly-audit-missing-alpine-323-amd64.yaml +++ b/.crow/weekly-audit-missing-alpine-323-amd64.yaml @@ -7,7 +7,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-alpine:3.23-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.23 pull: true environment: B2_S3_ACCESS_KEY: @@ -26,12 +26,13 @@ steps: PLATFORM: alpine-323 ARCH: amd64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-alpine-323-arm64.yaml b/.crow/weekly-audit-missing-alpine-323-arm64.yaml index f3433ea..9a7e344 100644 --- a/.crow/weekly-audit-missing-alpine-323-arm64.yaml +++ b/.crow/weekly-audit-missing-alpine-323-arm64.yaml @@ -7,7 +7,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-alpine:3.23-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.23 pull: true environment: B2_S3_ACCESS_KEY: @@ -26,12 +26,13 @@ steps: PLATFORM: alpine-323 ARCH: arm64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-redhat-10-amd64.yaml b/.crow/weekly-audit-missing-redhat-10-amd64.yaml index be0adce..a54dc5c 100644 --- a/.crow/weekly-audit-missing-redhat-10-amd64.yaml +++ b/.crow/weekly-audit-missing-redhat-10-amd64.yaml @@ -8,7 +8,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-redhat:10-4.5.3 + image: reg.devxy.io/rpkgs/build-env-redhat:10 pull: true environment: B2_S3_ACCESS_KEY: @@ -26,12 +26,13 @@ steps: PLATFORM: redhat-10 ARCH: amd64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-redhat-10-arm64.yaml b/.crow/weekly-audit-missing-redhat-10-arm64.yaml index fcfcce0..1cdb8f5 100644 --- a/.crow/weekly-audit-missing-redhat-10-arm64.yaml +++ b/.crow/weekly-audit-missing-redhat-10-arm64.yaml @@ -8,7 +8,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-redhat:10-4.5.3 + image: reg.devxy.io/rpkgs/build-env-redhat:10 pull: true environment: B2_S3_ACCESS_KEY: @@ -26,12 +26,13 @@ steps: PLATFORM: redhat-10 ARCH: arm64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-redhat-8-amd64.yaml b/.crow/weekly-audit-missing-redhat-8-amd64.yaml index 31e5bd3..96dec94 100644 --- a/.crow/weekly-audit-missing-redhat-8-amd64.yaml +++ b/.crow/weekly-audit-missing-redhat-8-amd64.yaml @@ -8,7 +8,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-redhat:8-4.4.3 + image: reg.devxy.io/rpkgs/build-env-redhat:8 pull: true environment: B2_S3_ACCESS_KEY: @@ -27,12 +27,13 @@ steps: PLATFORM: redhat-8 ARCH: amd64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-redhat-8-arm64.yaml b/.crow/weekly-audit-missing-redhat-8-arm64.yaml index c947e6c..c8009aa 100644 --- a/.crow/weekly-audit-missing-redhat-8-arm64.yaml +++ b/.crow/weekly-audit-missing-redhat-8-arm64.yaml @@ -8,7 +8,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-redhat:8-4.4.3 + image: reg.devxy.io/rpkgs/build-env-redhat:8 pull: true environment: B2_S3_ACCESS_KEY: @@ -27,12 +27,13 @@ steps: PLATFORM: redhat-8 ARCH: arm64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-redhat-9-amd64.yaml b/.crow/weekly-audit-missing-redhat-9-amd64.yaml index 9715204..c32ab75 100644 --- a/.crow/weekly-audit-missing-redhat-9-amd64.yaml +++ b/.crow/weekly-audit-missing-redhat-9-amd64.yaml @@ -8,7 +8,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-redhat:9-4.4.3 + image: reg.devxy.io/rpkgs/build-env-redhat:9 pull: true environment: B2_S3_ACCESS_KEY: @@ -27,12 +27,13 @@ steps: PLATFORM: redhat-9 ARCH: amd64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-redhat-9-arm64.yaml b/.crow/weekly-audit-missing-redhat-9-arm64.yaml index 3ebb5a2..a9de8c2 100644 --- a/.crow/weekly-audit-missing-redhat-9-arm64.yaml +++ b/.crow/weekly-audit-missing-redhat-9-arm64.yaml @@ -8,7 +8,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-redhat:9-4.4.3 + image: reg.devxy.io/rpkgs/build-env-redhat:9 pull: true environment: B2_S3_ACCESS_KEY: @@ -27,12 +27,13 @@ steps: PLATFORM: redhat-9 ARCH: arm64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-ubuntu-2204-amd64.yaml b/.crow/weekly-audit-missing-ubuntu-2204-amd64.yaml index 66af6b4..9dc87fc 100644 --- a/.crow/weekly-audit-missing-ubuntu-2204-amd64.yaml +++ b/.crow/weekly-audit-missing-ubuntu-2204-amd64.yaml @@ -8,7 +8,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy-4.4.3 + image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy pull: true environment: B2_S3_ACCESS_KEY: @@ -27,12 +27,13 @@ steps: PLATFORM: ubuntu-2204 ARCH: amd64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-ubuntu-2204-arm64.yaml b/.crow/weekly-audit-missing-ubuntu-2204-arm64.yaml index e1de5f5..da3d35b 100644 --- a/.crow/weekly-audit-missing-ubuntu-2204-arm64.yaml +++ b/.crow/weekly-audit-missing-ubuntu-2204-arm64.yaml @@ -8,7 +8,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy-4.4.3 + image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy pull: true environment: B2_S3_ACCESS_KEY: @@ -27,12 +27,13 @@ steps: PLATFORM: ubuntu-2204 ARCH: arm64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-ubuntu-2404-amd64.yaml b/.crow/weekly-audit-missing-ubuntu-2404-amd64.yaml index 6ee080b..f9f5460 100644 --- a/.crow/weekly-audit-missing-ubuntu-2404-amd64.yaml +++ b/.crow/weekly-audit-missing-ubuntu-2404-amd64.yaml @@ -8,7 +8,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4.3 + image: reg.devxy.io/rpkgs/build-env-ubuntu:noble pull: true environment: B2_S3_ACCESS_KEY: @@ -27,12 +27,13 @@ steps: PLATFORM: ubuntu-2404 ARCH: amd64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: diff --git a/.crow/weekly-audit-missing-ubuntu-2404-arm64.yaml b/.crow/weekly-audit-missing-ubuntu-2404-arm64.yaml index 9c7e093..f3aa0bb 100644 --- a/.crow/weekly-audit-missing-ubuntu-2404-arm64.yaml +++ b/.crow/weekly-audit-missing-ubuntu-2404-arm64.yaml @@ -8,7 +8,7 @@ skip_clone: true steps: - name: 'Audit missing binaries' - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4.3 + image: reg.devxy.io/rpkgs/build-env-ubuntu:noble pull: true environment: B2_S3_ACCESS_KEY: @@ -27,12 +27,13 @@ steps: PLATFORM: ubuntu-2404 ARCH: arm64 R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs - rm -rf /mnt/cache/R-pkgs/00LOCK-* - - R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' - - R -q -e 'source("local/weekly-missing-binaries-audit.R")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")' backend_options: kubernetes: resources: From 6f1c421434e07a9f42e6f5d79d2aa4cf045201b7 Mon Sep 17 00:00:00 2001 From: pat-s Date: Mon, 25 May 2026 22:53:50 +0200 Subject: [PATCH 06/10] refactor(ci): use multi-R-version images in update-package-index workflows Drop the R-version suffix from each image tag, add an explicit R_VERSION env var per file, and invoke R via /opt/R/${R_VERSION}/bin/R at every call site. Also repoints every update-package-index workflow at the image that matches its own platform (was previously pinned to build-env-ubuntu:noble-4.4 / noble-4.5 regardless of platform). --- .crow/update-package-index-alpine-322-amd64.yaml | 13 +++++++------ .crow/update-package-index-alpine-322-arm64.yaml | 13 +++++++------ .crow/update-package-index-alpine-323-amd64.yaml | 13 +++++++------ .crow/update-package-index-alpine-323-arm64.yaml | 13 +++++++------ .crow/update-package-index-redhat-10-amd64.yaml | 13 +++++++------ .crow/update-package-index-redhat-10-arm64.yaml | 13 +++++++------ .crow/update-package-index-redhat-8-amd64.yaml | 11 ++++++----- .crow/update-package-index-redhat-8-arm64.yaml | 13 +++++++------ .crow/update-package-index-redhat-9-amd64.yaml | 13 +++++++------ .crow/update-package-index-redhat-9-arm64.yaml | 13 +++++++------ .crow/update-package-index-ubuntu-2204-amd64.yaml | 13 +++++++------ .crow/update-package-index-ubuntu-2204-arm64.yaml | 13 +++++++------ .crow/update-package-index-ubuntu-2404-amd64.yaml | 13 +++++++------ .crow/update-package-index-ubuntu-2404-arm64.yaml | 13 +++++++------ 14 files changed, 97 insertions(+), 83 deletions(-) diff --git a/.crow/update-package-index-alpine-322-amd64.yaml b/.crow/update-package-index-alpine-322-amd64.yaml index ae408f1..9f868d6 100644 --- a/.crow/update-package-index-alpine-322-amd64.yaml +++ b/.crow/update-package-index-alpine-322-amd64.yaml @@ -9,7 +9,7 @@ skip_clone: true steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-alpine:3.22 pull: true environment: RED_HAT_DEV_PW: @@ -36,17 +36,18 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 # volumes: # - amd64-binaries-r-dep-cache-alpine-322:/mnt/cache commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' # - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/update-package-index-alpine-322-arm64.yaml b/.crow/update-package-index-alpine-322-arm64.yaml index 7d28c2a..ae8d9bd 100644 --- a/.crow/update-package-index-alpine-322-arm64.yaml +++ b/.crow/update-package-index-alpine-322-arm64.yaml @@ -12,7 +12,7 @@ depends_on: steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-alpine:3.22 pull: true environment: RED_HAT_DEV_PW: @@ -39,17 +39,18 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 # volumes: # - arm64-binaries-r-dep-cache-alpine-322:/mnt/cache commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' # - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/update-package-index-alpine-323-amd64.yaml b/.crow/update-package-index-alpine-323-amd64.yaml index 77fbf9c..725aa26 100644 --- a/.crow/update-package-index-alpine-323-amd64.yaml +++ b/.crow/update-package-index-alpine-323-amd64.yaml @@ -12,7 +12,7 @@ depends_on: steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-alpine:3.23 pull: true environment: RED_HAT_DEV_PW: @@ -39,17 +39,18 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 # volumes: # - amd64-binaries-r-dep-cache-alpine-323:/mnt/cache commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' # - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/update-package-index-alpine-323-arm64.yaml b/.crow/update-package-index-alpine-323-arm64.yaml index 471cb4a..ce12e75 100644 --- a/.crow/update-package-index-alpine-323-arm64.yaml +++ b/.crow/update-package-index-alpine-323-arm64.yaml @@ -12,7 +12,7 @@ depends_on: steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-alpine:3.23 pull: true environment: RED_HAT_DEV_PW: @@ -39,17 +39,18 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 # volumes: # - arm64-binaries-r-dep-cache-alpine-323:/mnt/cache commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' # - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/update-package-index-redhat-10-amd64.yaml b/.crow/update-package-index-redhat-10-amd64.yaml index b3f7056..3708457 100644 --- a/.crow/update-package-index-redhat-10-amd64.yaml +++ b/.crow/update-package-index-redhat-10-amd64.yaml @@ -13,7 +13,7 @@ depends_on: steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.5 + image: reg.devxy.io/rpkgs/build-env-redhat:10 pull: true environment: RED_HAT_DEV_PW: @@ -40,15 +40,16 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "rhel10", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "rhel10", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/update-package-index-redhat-10-arm64.yaml b/.crow/update-package-index-redhat-10-arm64.yaml index 22d6b2a..4550363 100644 --- a/.crow/update-package-index-redhat-10-arm64.yaml +++ b/.crow/update-package-index-redhat-10-arm64.yaml @@ -13,7 +13,7 @@ depends_on: steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-redhat:10 pull: true environment: RED_HAT_DEV_PW: @@ -40,15 +40,16 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.5.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "rhel10", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "rhel10", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/update-package-index-redhat-8-amd64.yaml b/.crow/update-package-index-redhat-8-amd64.yaml index e3d5840..f0c80e4 100644 --- a/.crow/update-package-index-redhat-8-amd64.yaml +++ b/.crow/update-package-index-redhat-8-amd64.yaml @@ -13,7 +13,7 @@ depends_on: steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-redhat:8 pull: true environment: RED_HAT_DEV_PW: @@ -40,14 +40,15 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "rhel8", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "rhel8", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/update-package-index-redhat-8-arm64.yaml b/.crow/update-package-index-redhat-8-arm64.yaml index 0e3111d..3da6384 100644 --- a/.crow/update-package-index-redhat-8-arm64.yaml +++ b/.crow/update-package-index-redhat-8-arm64.yaml @@ -13,7 +13,7 @@ depends_on: steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-redhat:8 pull: true environment: RED_HAT_DEV_PW: @@ -40,15 +40,16 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "rhel8",s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "rhel8",s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/update-package-index-redhat-9-amd64.yaml b/.crow/update-package-index-redhat-9-amd64.yaml index 45a45b9..54c2c41 100644 --- a/.crow/update-package-index-redhat-9-amd64.yaml +++ b/.crow/update-package-index-redhat-9-amd64.yaml @@ -13,7 +13,7 @@ depends_on: steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-redhat:9 pull: true environment: RED_HAT_DEV_PW: @@ -40,15 +40,16 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/update-package-index-redhat-9-arm64.yaml b/.crow/update-package-index-redhat-9-arm64.yaml index 3dabf98..9445b26 100644 --- a/.crow/update-package-index-redhat-9-arm64.yaml +++ b/.crow/update-package-index-redhat-9-arm64.yaml @@ -13,7 +13,7 @@ depends_on: steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-redhat:9 pull: true environment: RED_HAT_DEV_PW: @@ -40,15 +40,16 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/update-package-index-ubuntu-2204-amd64.yaml b/.crow/update-package-index-ubuntu-2204-amd64.yaml index d2b159a..f1a0828 100644 --- a/.crow/update-package-index-ubuntu-2204-amd64.yaml +++ b/.crow/update-package-index-ubuntu-2204-amd64.yaml @@ -13,7 +13,7 @@ depends_on: steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy pull: true environment: RED_HAT_DEV_PW: @@ -40,15 +40,16 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "jammy", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY")); warnings()' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "jammy", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY")); warnings()' backend_options: kubernetes: resources: diff --git a/.crow/update-package-index-ubuntu-2204-arm64.yaml b/.crow/update-package-index-ubuntu-2204-arm64.yaml index 57a8104..0641817 100644 --- a/.crow/update-package-index-ubuntu-2204-arm64.yaml +++ b/.crow/update-package-index-ubuntu-2204-arm64.yaml @@ -13,7 +13,7 @@ depends_on: steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy pull: true environment: RED_HAT_DEV_PW: @@ -40,15 +40,16 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "jammy", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "jammy", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/update-package-index-ubuntu-2404-amd64.yaml b/.crow/update-package-index-ubuntu-2404-amd64.yaml index f507c0b..a6f5e18 100644 --- a/.crow/update-package-index-ubuntu-2404-amd64.yaml +++ b/.crow/update-package-index-ubuntu-2404-amd64.yaml @@ -13,7 +13,7 @@ depends_on: steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-ubuntu:noble pull: true environment: RED_HAT_DEV_PW: @@ -40,17 +40,18 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 # volumes: # - amd64-binaries-r-dep-cache-ubuntu-2404:/mnt/cache commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "noble", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "noble", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: diff --git a/.crow/update-package-index-ubuntu-2404-arm64.yaml b/.crow/update-package-index-ubuntu-2404-arm64.yaml index e052a66..c11044f 100644 --- a/.crow/update-package-index-ubuntu-2404-arm64.yaml +++ b/.crow/update-package-index-ubuntu-2404-arm64.yaml @@ -13,7 +13,7 @@ depends_on: steps: - name: Upload PACKAGES files - image: reg.devxy.io/rpkgs/build-env-ubuntu:noble-4.4 + image: reg.devxy.io/rpkgs/build-env-ubuntu:noble pull: true environment: RED_HAT_DEV_PW: @@ -40,15 +40,16 @@ steps: # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_LIBS_USER: /mnt/cache/R-pkgs + R_VERSION: 4.4.3 commands: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/packages/* - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' - - R -q -e 'pak::pak("pat-s/cranlike@s3")' - - R -q -e 'pak::pak("pat-s/desc@description-from-remote")' - - R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' - cd /mnt/cache/packages - - R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "noble", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' + - /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "noble", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))' backend_options: kubernetes: resources: From b25885bae3edb381cd1e8146ef39ce0711ec1eaf Mon Sep 17 00:00:00 2001 From: pat-s Date: Mon, 25 May 2026 22:57:21 +0200 Subject: [PATCH 07/10] refactor(ci): use multi-R-version image in archive-missed-packages Drop the R-version suffix from the image tag and invoke R via the explicit /opt/R/${R_VERSION}/bin/R path. The image OS does not matter for this workflow; it stays on alpine:3.23. --- .crow/archive-missed-packages.yaml | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/.crow/archive-missed-packages.yaml b/.crow/archive-missed-packages.yaml index 1077b7d..e033f88 100644 --- a/.crow/archive-missed-packages.yaml +++ b/.crow/archive-missed-packages.yaml @@ -36,7 +36,7 @@ matrix: steps: - name: 'Archive missed packages' - image: reg.devxy.io/rpkgs/build-env-alpine:3.23-4.5 + image: reg.devxy.io/rpkgs/build-env-alpine:3.23 pull: true environment: RED_HAT_DEV_PW: @@ -53,10 +53,11 @@ steps: from_secret: GITHUB_PAT # normal env vars GIT_USER: pat-s + R_VERSION: 4.5.3 commands: - - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git", dependencies = TRUE)' - - R -q -e 'packageVersion("bincraft")' - - R -q -e 'bincraft::process_unarchived_pkgs(Sys.getenv("CODENAME"), Sys.getenv("ARCH"), workers = 2L)' + - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git", dependencies = TRUE)' + - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' + - /opt/R/${R_VERSION}/bin/R -q -e 'bincraft::process_unarchived_pkgs(Sys.getenv("CODENAME"), Sys.getenv("ARCH"), workers = 2L)' backend_options: kubernetes: resources: From 386deb5dfbf390c0fcd6d72872c8cd99f98bedfe Mon Sep 17 00:00:00 2001 From: pat-s Date: Mon, 25 May 2026 22:58:57 +0200 Subject: [PATCH 08/10] refactor(ci): use multi-R-version image in build-r-minor-sensitive-packages Drop -${r_version} from the docker.io/devxygmbh tag and invoke R via the explicit /opt/R/${r_version}/bin/R path (including R CMD INSTALL). Bumps the matrix r_version values from 4.5/4.4 to the full-patch 4.5.3/4.4.3, matching the rest of the refactor's 'always full patch' rule. --- .crow/build-r-minor-sensitive-packages.yaml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/.crow/build-r-minor-sensitive-packages.yaml b/.crow/build-r-minor-sensitive-packages.yaml index 6e9d10c..e4eea47 100644 --- a/.crow/build-r-minor-sensitive-packages.yaml +++ b/.crow/build-r-minor-sensitive-packages.yaml @@ -17,16 +17,16 @@ matrix: include: - os: alpine os_version: 3.21 - r_version: 4.5 + r_version: 4.5.3 - os: alpine os_version: 3.21 - r_version: 4.4 + r_version: 4.4.3 # - os: alpine # os_version: 3.21 # r_version: 4.3 steps: - name: 'Build R-minor-sensitive binaries' - image: "docker.io/devxygmbh/rpkgs-build-env-${os}:${os_version}-${r_version}" + image: "docker.io/devxygmbh/rpkgs-build-env-${os}:${os_version}" pull: true environment: RED_HAT_DEV_PW: @@ -60,10 +60,10 @@ steps: - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - rm -rf /mnt/cache/R-pkgs/00LOCK-* - mkdir -p /tmp/R-libs - - git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft && R CMD INSTALL --library=/tmp/R-libs /tmp/bincraft && R -q -e 'packageVersion("bincraft")' + - git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft && /opt/R/${r_version}/bin/R CMD INSTALL --library=/tmp/R-libs /tmp/bincraft && /opt/R/${r_version}/bin/R -q -e 'packageVersion("bincraft")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run) - - $XVFB -- R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); pkgs = bincraft::get_r_minor_sensitive_packages(r_minor_packages_issue_url = 'https://git.devxy.io/api/v1/repos/devxy/build-cran-binaries/issues/29'); foo = lapply(pkgs, function(x) bincraft::build_binary_package(x, is_debug = FALSE, is_r_minor_sensitive = TRUE, force = FALSE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE))" 2>&1 + - $XVFB -- /opt/R/${r_version}/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); pkgs = bincraft::get_r_minor_sensitive_packages(r_minor_packages_issue_url = 'https://git.devxy.io/api/v1/repos/devxy/build-cran-binaries/issues/29'); foo = lapply(pkgs, function(x) bincraft::build_binary_package(x, is_debug = FALSE, is_r_minor_sensitive = TRUE, force = FALSE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE))" 2>&1 backend_options: kubernetes: resources: From e221e891199d60ad1ae7d6470abc92a56b844992 Mon Sep 17 00:00:00 2001 From: pat-s Date: Mon, 25 May 2026 23:01:11 +0200 Subject: [PATCH 09/10] refactor(justfile): use multi-R-version images in build/process recipes Drop -{{R_VERSION}} from the image tag and invoke R via the explicit /opt/R/{{R_VERSION}}/bin/R path in build-all, build-single, and process-updates. Updates example comments to use current platform/R combinations. --- Justfile | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/Justfile b/Justfile index 069f8c2..0c960d9 100644 --- a/Justfile +++ b/Justfile @@ -1,13 +1,13 @@ -# just build-all alpine 3.21 arm64 4.5.0 odbc 1 +# just build-all alpine 3.22 arm64 4.5.3 odbc 1 build-all OS OS_VERSION ARCH R_VERSION PACKAGE NCPUS: - docker run --rm -it --platform linux/{{ARCH}} -v ./:/package -e AWS_ACCESS_KEY_ID="$HETZNER_S3_ACCESS_KEY_K3S" -e AWS_SECRET_ACCESS_KEY="$HETZNER_S3_SECRET_KEY_K3S" -e PGPASS="$PGPASS" -e NCPUS={{NCPUS}} --pull=always reg.devxy.io/rpkgs/build-env-{{OS}}:{{OS_VERSION}}-{{R_VERSION}} bash -c 'R -q -e "install.packages(\"pak\", repos = sprintf(\"https://r-lib.github.io/p/pak/stable/%s/%s/%s\", .Platform\$pkgType, R.Version()\$os, R.Version()\$arch))" && R -q -e "pak::pak(\"git::https://codefloe.com/rpkgs/bincraft.git\")" && R -q -e "bincraft::build_binary_package(\"{{PACKAGE}}\", platform = \"{{OS}}\", force=TRUE, s3_endpoint = \"https://hel1.your-objectstorage.com\", s3_region = \"hel1\", s3_bucket = \"devxy-r-package-binaries-hel1\", s3_access_key_id = Sys.getenv(\"HETZNER_S3_ACCESS_KEY_K3S\"), s3_secret_access_key = Sys.getenv(\"HETZNER_S3_SECRET_KEY_K3S\"), metadata_db_host = \"r-binaries.devxy.io\", metadata_db_name = \"build_metadata\", metadata_db_table = \"single_builds\", metadata_db_user = \"rpkgs\", metadata_db_password = Sys.getenv(\"PGPASS\"), metadata_db_sslmode = \"require\", metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"' + docker run --rm -it --platform linux/{{ARCH}} -v ./:/package -e AWS_ACCESS_KEY_ID="$HETZNER_S3_ACCESS_KEY_K3S" -e AWS_SECRET_ACCESS_KEY="$HETZNER_S3_SECRET_KEY_K3S" -e PGPASS="$PGPASS" -e NCPUS={{NCPUS}} --pull=always reg.devxy.io/rpkgs/build-env-{{OS}}:{{OS_VERSION}} bash -c '/opt/R/{{R_VERSION}}/bin/R -q -e "install.packages(\"pak\", repos = sprintf(\"https://r-lib.github.io/p/pak/stable/%s/%s/%s\", .Platform\$pkgType, R.Version()\$os, R.Version()\$arch))" && /opt/R/{{R_VERSION}}/bin/R -q -e "pak::pak(\"git::https://codefloe.com/rpkgs/bincraft.git\")" && /opt/R/{{R_VERSION}}/bin/R -q -e "bincraft::build_binary_package(\"{{PACKAGE}}\", platform = \"{{OS}}\", force=TRUE, s3_endpoint = \"https://hel1.your-objectstorage.com\", s3_region = \"hel1\", s3_bucket = \"devxy-r-package-binaries-hel1\", s3_access_key_id = Sys.getenv(\"HETZNER_S3_ACCESS_KEY_K3S\"), s3_secret_access_key = Sys.getenv(\"HETZNER_S3_SECRET_KEY_K3S\"), metadata_db_host = \"r-binaries.devxy.io\", metadata_db_name = \"build_metadata\", metadata_db_table = \"single_builds\", metadata_db_user = \"rpkgs\", metadata_db_password = Sys.getenv(\"PGPASS\"), metadata_db_sslmode = \"require\", metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"' -# just build-single alpine 3.21 arm64 4.5.0 odbc 1.5.0 1 -# just build-single alpine 3.22 arm64 4.5.0 sf latest 1 -# just build-single ubuntu noble arm64 4.2.3 rlang 1.1.6 1 +# just build-single alpine 3.22 arm64 4.5.3 odbc 1.5.0 1 +# just build-single alpine 3.22 arm64 4.5.3 sf latest 1 +# just build-single ubuntu noble arm64 4.4.3 rlang 1.1.6 1 build-single OS OS_VERSION ARCH R_VERSION PACKAGE TAG NCPUS: - docker run --rm -it --platform linux/{{ARCH}} -v ./:/package -e AWS_ACCESS_KEY_ID="$HETZNER_S3_ACCESS_KEY_K3S" -e AWS_SECRET_ACCESS_KEY="$HETZNER_S3_SECRET_KEY_K3S" -e PGPASS="$PGPASS" -e NCPUS={{NCPUS}} --pull=always reg.devxy.io/rpkgs/build-env-{{OS}}:{{OS_VERSION}}-{{R_VERSION}} bash -c 'R -q -e "install.packages(\"pak\", repos = sprintf(\"https://r-lib.github.io/p/pak/stable/%s/%s/%s\", .Platform\$pkgType, R.Version()\$os, R.Version()\$arch))" && R -q -e "pak::pak(\"git::https://codefloe.com/rpkgs/bincraft.git\")" && R -q -e "bincraft::build_binary_package(\"{{PACKAGE}}\", tag = \"{{TAG}}\", platform = \"{{OS}}\", force=TRUE, s3_endpoint = \"https://hel1.your-objectstorage.com\", s3_region = \"hel1\", s3_bucket = \"devxy-r-package-binaries-hel1\", s3_access_key_id = Sys.getenv(\"HETZNER_S3_ACCESS_KEY_K3S\"), s3_secret_access_key = Sys.getenv(\"HETZNER_S3_SECRET_KEY_K3S\"), metadata_db_host = \"r-binaries.devxy.io\", metadata_db_name = \"build_metadata\", metadata_db_table = \"single_builds\", metadata_db_user = \"rpkgs\", metadata_db_password = Sys.getenv(\"PGPASS\"), metadata_db_sslmode = \"require\", metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"' + docker run --rm -it --platform linux/{{ARCH}} -v ./:/package -e AWS_ACCESS_KEY_ID="$HETZNER_S3_ACCESS_KEY_K3S" -e AWS_SECRET_ACCESS_KEY="$HETZNER_S3_SECRET_KEY_K3S" -e PGPASS="$PGPASS" -e NCPUS={{NCPUS}} --pull=always reg.devxy.io/rpkgs/build-env-{{OS}}:{{OS_VERSION}} bash -c '/opt/R/{{R_VERSION}}/bin/R -q -e "install.packages(\"pak\", repos = sprintf(\"https://r-lib.github.io/p/pak/stable/%s/%s/%s\", .Platform\$pkgType, R.Version()\$os, R.Version()\$arch))" && /opt/R/{{R_VERSION}}/bin/R -q -e "pak::pak(\"git::https://codefloe.com/rpkgs/bincraft.git\")" && /opt/R/{{R_VERSION}}/bin/R -q -e "bincraft::build_binary_package(\"{{PACKAGE}}\", tag = \"{{TAG}}\", platform = \"{{OS}}\", force=TRUE, s3_endpoint = \"https://hel1.your-objectstorage.com\", s3_region = \"hel1\", s3_bucket = \"devxy-r-package-binaries-hel1\", s3_access_key_id = Sys.getenv(\"HETZNER_S3_ACCESS_KEY_K3S\"), s3_secret_access_key = Sys.getenv(\"HETZNER_S3_SECRET_KEY_K3S\"), metadata_db_host = \"r-binaries.devxy.io\", metadata_db_name = \"build_metadata\", metadata_db_table = \"single_builds\", metadata_db_user = \"rpkgs\", metadata_db_password = Sys.getenv(\"PGPASS\"), metadata_db_sslmode = \"require\", metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"' # just process-updates redhat 9 arm64 4.4.3 'lubridate::interval(lubridate::today() - 4, lubridate::today() - 4)' process-updates OS OS_VERSION ARCH R_VERSION interval: - docker run --rm -it --platform linux/{{ARCH}} -e AWS_ACCESS_KEY_ID="$HETZNER_S3_ACCESS_KEY_K3S" -e AWS_SECRET_ACCESS_KEY="$HETZNER_S3_SECRET_KEY_K3S" -e PGPASS="$PGPASS" --pull=always reg.devxy.io/rpkgs/build-env-{{OS}}:{{OS_VERSION}}-{{R_VERSION}} R -q -e "bincraft::process_cran_updates(interval = {{interval}}, platform = \"{{OS}}\", s3_endpoint = \"https://hel1.your-objectstorage.com\", s3_region = \"hel1\", s3_bucket = \"devxy-r-package-binaries-hel1\", s3_access_key_id = Sys.getenv(\"HETZNER_S3_ACCESS_KEY_K3S\"), s3_secret_access_key = Sys.getenv(\"HETZNER_S3_SECRET_KEY_K3S\"), metadata_db_host = \"r-binaries.devxy.io\", metadata_db_name = \"build_metadata\", metadata_db_table = \"single_builds\", metadata_db_user = \"rpkgs\", metadata_db_password = Sys.getenv(\"PGPASS\"), metadata_db_sslmode = \"require\", metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" + docker run --rm -it --platform linux/{{ARCH}} -e AWS_ACCESS_KEY_ID="$HETZNER_S3_ACCESS_KEY_K3S" -e AWS_SECRET_ACCESS_KEY="$HETZNER_S3_SECRET_KEY_K3S" -e PGPASS="$PGPASS" --pull=always reg.devxy.io/rpkgs/build-env-{{OS}}:{{OS_VERSION}} /opt/R/{{R_VERSION}}/bin/R -q -e "bincraft::process_cran_updates(interval = {{interval}}, platform = \"{{OS}}\", s3_endpoint = \"https://hel1.your-objectstorage.com\", s3_region = \"hel1\", s3_bucket = \"devxy-r-package-binaries-hel1\", s3_access_key_id = Sys.getenv(\"HETZNER_S3_ACCESS_KEY_K3S\"), s3_secret_access_key = Sys.getenv(\"HETZNER_S3_SECRET_KEY_K3S\"), metadata_db_host = \"r-binaries.devxy.io\", metadata_db_name = \"build_metadata\", metadata_db_table = \"single_builds\", metadata_db_user = \"rpkgs\", metadata_db_password = Sys.getenv(\"PGPASS\"), metadata_db_sslmode = \"require\", metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" From 5c88b2bc3762fbb53de7b7a34949108377e02c92 Mon Sep 17 00:00:00 2001 From: pat-s Date: Mon, 25 May 2026 23:02:21 +0200 Subject: [PATCH 10/10] refactor: keep commented build-all-versions-install-deps example in sync Mirror the multi-R-version image refactor in the commented-out template so the example remains faithful to active .crow workflows. --- build-all-versions-install-deps.yaml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/build-all-versions-install-deps.yaml b/build-all-versions-install-deps.yaml index d7c0180..afcbb58 100644 --- a/build-all-versions-install-deps.yaml +++ b/build-all-versions-install-deps.yaml @@ -17,7 +17,7 @@ # steps: # - name: 'Install common R deps' -# image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION} +# image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION} # pull: true # environment: # REPO_RO_TOKEN: @@ -40,11 +40,11 @@ # - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . # - mkdir -p /mnt/cache/R-pkgs # - rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/pkgcache -# - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))' -# - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git", dependencies = TRUE)' -# - R -q -e 'packageVersion("bincraft")' -# # - R -q -e "future::plan('multisession', workers = 6L); pkgs = bincraft::query_packages_without_historic_versions('alpine322', 'amd64'); saveRDS(pkgs, '/mnt/cache/pkgs_amd64.rds')" -# - R -q -e "future::plan('multisession', workers = 6L); pkgs = bincraft::query_packages_without_historic_versions('alpine323', 'arm64'); saveRDS(pkgs, '/mnt/cache/pkgs_arm64.rds')" +# - /opt/R/${R_VERSION}/bin/R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))' +# - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git", dependencies = TRUE)' +# - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")' +# # - /opt/R/${R_VERSION}/bin/R -q -e "future::plan('multisession', workers = 6L); pkgs = bincraft::query_packages_without_historic_versions('alpine322', 'amd64'); saveRDS(pkgs, '/mnt/cache/pkgs_amd64.rds')" +# - /opt/R/${R_VERSION}/bin/R -q -e "future::plan('multisession', workers = 6L); pkgs = bincraft::query_packages_without_historic_versions('alpine323', 'arm64'); saveRDS(pkgs, '/mnt/cache/pkgs_arm64.rds')" # backend_options: # kubernetes: # resources: