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Author SHA1 Message Date
automation-bot
70b6bf42bb chore(deps): update reg.devxy.io/rpkgs/build-env-redhat docker tag to v9 2026-04-12 08:01:16 +00:00
360aa45e90
fix: replace colon in error message to avoid YAML parsing issue in rebuild workflows
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2026-04-11 21:53:22 +02:00
5d9bdbb3a9
feat: add 14 weekly rebuild workflows for all platform/arch combos 2026-04-11 21:46:38 +02:00
10aeffd9fa
feat: add 14 weekly audit workflows for all platform/arch combos 2026-04-11 21:45:29 +02:00
ffb8c42511
feat: add weekly missing binaries audit R script 2026-04-11 21:41:59 +02:00
84f59682eb
feat: add excluded-packages.json for weekly missing binaries workflow 2026-04-11 21:41:55 +02:00
82dd2af5b2
docs: add implementation plan for weekly missing binaries audit & rebuild 2026-04-11 21:23:59 +02:00
154a517cfc
docs: add design spec for weekly missing binaries audit & rebuild workflow 2026-04-11 21:16:30 +02:00
14950a6bfc
refactor: chain update-package-index workflows sequentially to avoid overwhelming S3 endpoint
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All 12 workflows were triggered simultaneously by the update-package-index cron. Now they run one after another via depends_on. Individual cron triggers still allow running one at a time.
2026-04-11 10:18:35 +02:00
a64dea6b23
refactor: separate install-deps workflows for arch
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2026-04-11 09:49:44 +02:00
1c1bfb5f6d
chore: align arm64 workflow 2026-04-11 09:47:19 +02:00
ce8d74d0eb
refactor: apply same build improvements to arm64 workflow
Uses install-deps step, precomputed package list, weston compositor, stderr redirect, sequential plan with progress output, and unique X server numbers.
2026-04-11 09:47:04 +02:00
9ff676a5cb
chore: don't clean cache
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2026-04-10 20:16:05 +02:00
4b27430270
fix: use weston instead of mutter as Wayland compositor to reduce memory usage
Mutter (default xwfb-run compositor) consumes ~200-500MB per instance, causing fork failures with 5 parallel matrix jobs. Weston is much lighter.
2026-04-10 20:15:42 +02:00
4892497c76
fix: redirect R message stream to stdout to bypass xwfb-run stderr swallowing
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2026-04-10 17:48:29 +02:00
112bc60ec2
debug: add per-package progress output to stdout to diagnose hang vs buffering
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2026-04-10 17:30:20 +02:00
270843eaf9
refactor: precompute package list in install-deps step to reduce matrix job memory usage
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Move packages-to-build.R execution to the single install-deps step and save results as RDS. Matrix jobs read the precomputed list instead of loading the massive CRAN archive/release databases, freeing memory for fork/system calls.
2026-04-10 16:21:33 +02:00
e53f11a896
fix: one-time full R-pkgs cache wipe to fix corrupted .so files from previous failed builds
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2026-04-10 16:04:49 +02:00
858f13140b
fix: clear pak cache before installing bincraft to ensure new version is picked up
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2026-04-10 15:02:10 +02:00
6da70e5074
fix: use unique X server number per matrix job to prevent Xwayland collisions
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2026-04-10 12:43:11 +02:00
3f985b3bc7
fix: use plan('sequential') instead of removing future, bincraft needs it internally for future_mapply
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2026-04-10 12:41:09 +02:00
f831db042c
fix: use plan('multisession') instead of plan('sequential') for future_mapply compatibility
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2026-04-10 12:37:44 +02:00
1ff6a0c32a
fix: use plan('sequential') instead of removing future, bincraft needs it internally for future_mapply
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2026-04-10 08:18:53 +02:00
7ca1b6e5c6
fix: remove pak::sysreqs_db_update() from matrix step, already cached by install-deps
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2026-04-10 00:28:34 +02:00
7bd77a2873
fix: stop wiping entire R-pkgs cache, only clean locks and bincraft now that cache is rebuilt
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2026-04-10 00:17:11 +02:00
e062c58185
fix: restore pak::sysreqs_db_update() in matrix step and pre-cache it in install-deps 2026-04-10 00:15:23 +02:00
18a8f2dc54
fix: install packages-to-build.R deps (RPostgres, s3fs, data.table, future) in install-deps step
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2026-04-10 00:07:54 +02:00
0c4b56262c
fix: remove redundant pak::sysreqs_db_update() from matrix step to reduce memory pressure
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2026-04-10 00:06:25 +02:00
f3d71a1112
fix: wipe entire R-pkgs cache to rebuild from scratch after corruption from failed installs
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2026-04-10 00:01:16 +02:00
11c4071c0d
fix: remove future multisession to avoid fork memory failures with parallel matrix jobs
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2026-04-09 23:58:51 +02:00
d5f7ecc0b4
fix: skip dependency upgrades in install-deps step to avoid memory issues
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2026-04-09 23:56:46 +02:00
272275e868
refactor: move bincraft install to separate pre-matrix pipeline step
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Adds build-all-versions-install-deps pipeline that runs once before the matrix builds, cleaning stale locks and installing bincraft to the shared cache without contention.
2026-04-09 23:55:30 +02:00
08070ce62f
test: use sequential lapply instead of future multisession to rule out fork memory issue
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2026-04-09 23:49:47 +02:00
0aba224c11
fix: install bincraft to per-job /tmp/R-libs to avoid shared cache conflicts between parallel matrix builds
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2026-04-09 23:41:41 +02:00
0efe1d3485
fix: remove cached bincraft dir before install to avoid pak metadata conflict
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2026-04-09 23:37:40 +02:00
978eb42e2a
fix: skip dependency upgrades when installing bincraft with pak::local_install()
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2026-04-09 23:33:29 +02:00
7d58aa7e59
fix: use pak::local_install() from cloned path to avoid git URL resolution bug
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2026-04-09 23:27:50 +02:00
fee3e4ca94
fix: install bincraft via git clone + R CMD INSTALL --no-deps to avoid dependency rebuild and lock conflicts
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2026-04-09 23:25:49 +02:00
9ce6b0b4e1
fix: remove old bincraft before reinstall to avoid RemoteType metadata conflict
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2026-04-09 23:24:30 +02:00
3fbf4ca1f8
fix: force reinstall bincraft to bypass RemoteType mismatch with pak
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2026-04-09 23:22:47 +02:00
2f81bd6be5
fix: clean stale R package lock dirs before installing bincraft
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Parallel matrix jobs sharing /mnt/cache/R-pkgs leave stale 00LOCK-* dirs that block subsequent installs.
2026-04-09 23:21:12 +02:00
1b24fa731a
fix: install remotes package if missing before installing bincraft
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2026-04-09 23:19:53 +02:00
c9040ee50a
fix: use remotes::install_git() instead of pak::pak() for bincraft installation
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pak::pak() with git:: URLs fails with "subscript out of bounds" in the build environment.
2026-04-09 23:18:59 +02:00
36c69e983f
chore: always update bincraft at build start instead of using cached version
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2026-04-09 23:16:35 +02:00
aa2a6edef4
fix: write error message to stdout so it appears in CI logs
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2026-04-09 23:06:10 +02:00
688c299138
chore: redirect stderr to stdout in build commands to surface R errors
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2026-04-09 23:01:40 +02:00
852f732933
fix: compute platform for all distros and add error handler to surface failures
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platform was only set inside an alpine-specific if block, causing undefined variable errors for ubuntu/redhat builds that silently exited with code 1.
2026-04-09 22:59:46 +02:00
9568d4dbfa
fix: migrate packages-to-build.R S3 config from Hetzner to Backblaze
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The S3 credentials, endpoint, and bucket name were still pointing to the old Hetzner storage after the Backblaze migration, causing silent build failures.
2026-04-09 22:53:49 +02:00
dae04820f8
fix: add -- separator to xwfb-run invocations to prevent flag interception
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xwfb-run uses argparse and was consuming R's -q flag as its own argument, causing build failures.
2026-04-09 22:51:37 +02:00
automation-bot
a700194e4a chore(deps): update terraform bunnynet to ~> 0.14
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2026-03-26 00:02:08 +00:00
0f8d36cb51
chore: use xwfb-run conditionally for RHEL 10 support
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2026-03-24 11:31:23 +01:00
3adf48b1c0
chore: build on artemis on docker backend
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2026-03-24 09:50:44 +01:00
f69ddfdc1a
chore: remove alpine 321 index updates
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2026-03-23 11:16:46 +01:00
7bd4c75338
alpine 3.23
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2026-03-22 12:37:04 +01:00
861862ef81
chore: rename proxy cache 2026-03-22 12:36:42 +01:00
5f2fe24b45
chore: increase update package index memory
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2026-03-22 11:53:27 +01:00
e959d9743f
refactor: migrate to backblaze
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2026-03-22 00:32:03 +01:00
71 changed files with 3538 additions and 383 deletions

View file

@ -41,10 +41,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:

View file

@ -3,9 +3,9 @@
# OS (alpine) # OS (alpine)
# OS_VERSION (3.22) # OS_VERSION (3.22)
# R_VERSION (4.5) # R_VERSION (4.5)
# woodpecker-cli pipeline create --var ARCH=amd64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5 --var task=build-all-amd64 --var K8S_INSTANCE_TYPE=AX42 --branch=main --log-level=info 5 # crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5
# crow-dev pipeline create --var ARCH=amd64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5 --var task=build-all-amd64 --var K8S_INSTANCE_TYPE=AX42 --branch=main --log-level=info 5 # crow pipeline create --var ARCH=arm64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5
# crow pipeline create --var ARCH=amd64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5 --var task=build-all-amd64 --var K8S_INSTANCE_TYPE=AX42 --branch=main --log-level=info 5 # crow pipeline create --var ARCH=amd64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-amd64 --var K8S_INSTANCE_TYPE=AX42 --branch=main --log-level=info 5
when: when:
- event: manual - event: manual
evaluate: 'task == "build-all-amd64"' evaluate: 'task == "build-all-amd64"'
@ -14,7 +14,7 @@ skip_clone: true
labels: labels:
platform: linux/amd64 platform: linux/amd64
backend: kubernetes agent: artemis
matrix: matrix:
include: include:
@ -34,8 +34,8 @@ matrix:
SPLIT_INDEX: 5 SPLIT_INDEX: 5
BACKEND: kubernetes BACKEND: kubernetes
# depends_on: depends_on:
# - build-all-versions-install-deps - build-all-versions-install-deps-amd64
steps: steps:
- name: 'Build binaries' - name: 'Build binaries'
@ -44,10 +44,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -65,11 +65,11 @@ steps:
- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
commands: commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE)) pak::pak("git::https://codefloe.com/rpkgs/bincraft.git"); packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'rFUSION', 'MediaNews' # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'rFUSION', 'MediaNews'
# pkgs = readRDS('/mnt/cache/pkgs_amd64.rds'); # pkgs = readRDS('/mnt/cache/pkgs_amd64.rds');
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); source('local/packages-to-build.R'); sprintf('Total# of remaining packages:%s', length(pkgs)); pkgs <- split(pkgs, cut(seq_along(pkgs), $SPLIT_INTO, labels = F))[[$SPLIT_INDEX]]; sprintf('# of packages for this job:%s', length(pkgs)); pkgs = setdiff(pkgs, c('RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'doBy', 'IDPmisc', 'frailtypack', 'afex', 'FrF2', 'DoE.base', 'agricolae', 'doFuture', 'fscaret', 'PHYLOGR', 'seewave', 'pls', 'relaimpo', 'geepack', 'gggenes', 'NPCirc', 'repmis', 'PNDSIBGE', 'lidR', 'poismf', 'neonstore', 'MachineShop', 'mvst', 'MacBehaviour', 'mcmcderive', 'RGIFT', 'KnowBR', 'netmeta', 'spdep', 'Rfast', 'compareGroups', 'ff', 'GsymPoint', 'RcppDynProg', 'comtradr', 'RcppDynProg', 'FD', 'PearsonDS', 'DCluster', 'gRc', 'mixlm', 'geospt', 'fdth', 'ffmanova', 'fiery', 'ffscrapr', 'cold', 'fiery', 'RcmdrPlugin.DoE', 'RcmdrPlugin.NMBU', 'RcmdrPlugin.RiskDemo', 'RcmdrPlugin.TeachStat', 'RcmdrPlugin.TeachingDemos', 'RcmdrPlugin.UCA', 'RcmdrPlugin.WorldFlora', 'RcmdrPlugin.aRnova', 'RcmdrPlugin.depthTools', 'RcmdrPlugin.orloca', 'RcmdrPlugin.sos', 'RcmdrPlugin.survival', 'RcmdrPlugin.temis', 'GWlasso', 'GWmodelVis')); library(future); plan('multisession'); foo = lapply(pkgs, function(x) bincraft::build_binary_package(x, s3_endpoint = 'https://hel1.your-objectstorage.com', tag_limit = 5L, s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE))" - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
- $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = readRDS('/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Total# of remaining packages:%s', length(pkgs)); pkgs <- split(pkgs, cut(seq_along(pkgs), $SPLIT_INTO, labels = F))[[$SPLIT_INDEX]]; sprintf('# of packages for this job:%s', length(pkgs)); pkgs = setdiff(pkgs, c('RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'doBy', 'IDPmisc', 'frailtypack', 'afex', 'FrF2', 'DoE.base', 'agricolae', 'doFuture', 'fscaret', 'PHYLOGR', 'seewave', 'pls', 'relaimpo', 'geepack', 'gggenes', 'NPCirc', 'repmis', 'PNDSIBGE', 'lidR', 'poismf', 'neonstore', 'MachineShop', 'mvst', 'MacBehaviour', 'mcmcderive', 'RGIFT', 'KnowBR', 'netmeta', 'spdep', 'Rfast', 'compareGroups', 'ff', 'GsymPoint', 'RcppDynProg', 'comtradr', 'RcppDynProg', 'FD', 'PearsonDS', 'DCluster', 'gRc', 'mixlm', 'geospt', 'fdth', 'ffmanova', 'fiery', 'ffscrapr', 'cold', 'fiery', 'RcmdrPlugin.DoE', 'RcmdrPlugin.NMBU', 'RcmdrPlugin.RiskDemo', 'RcmdrPlugin.TeachStat', 'RcmdrPlugin.TeachingDemos', 'RcmdrPlugin.UCA', 'RcmdrPlugin.WorldFlora', 'RcmdrPlugin.aRnova', 'RcmdrPlugin.depthTools', 'RcmdrPlugin.orloca', 'RcmdrPlugin.sos', 'RcmdrPlugin.survival', 'RcmdrPlugin.temis', 'GWlasso', 'GWmodelVis')); library(future); plan('sequential'); n = length(pkgs); foo = lapply(seq_along(pkgs), function(i) { x = pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); bincraft::build_binary_package(x, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', tag_limit = 5L, s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE) })" 2>&1
# archive missed packages # archive missed packages
- R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)" - R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)"
backend_options: backend_options:

View file

@ -5,9 +5,8 @@
# R_VERSION (4.5) # R_VERSION (4.5)
# echo "c('RInno','KeyboardSimulator','R2PPT','RWinEdt','blatr','excel.link','spectrino','taskscheduleR','MDSGUI','BiplotGUI','R2wd','rFUSION','MediaNews','doBy','IDPmisc','frailtypack','afex','FrF2','DoE.base','agricolae','doFuture','fscaret','PHYLOGR','seewave','pls','relaimpo','geepack','gggenes','NPCirc','repmis','PNDSIBGE','lidR','poismf','neonstore','MachineShop','mvst','MacBehaviour','mcmcderive','RGIFT','KnowBR','netmeta','spdep','sf','Rfast','compareGroups','ff','GsymPoint','RcppDynProg','comtradr','RcppDynProg','FD','PearsonDS','DCluster','gRc','mixlm','geospt','fdth','ffmanova','fiery','ffscrapr','cold','fiery','RcmdrPlugin.DoE','RcmdrPlugin.NMBU')" | base64 # echo "c('RInno','KeyboardSimulator','R2PPT','RWinEdt','blatr','excel.link','spectrino','taskscheduleR','MDSGUI','BiplotGUI','R2wd','rFUSION','MediaNews','doBy','IDPmisc','frailtypack','afex','FrF2','DoE.base','agricolae','doFuture','fscaret','PHYLOGR','seewave','pls','relaimpo','geepack','gggenes','NPCirc','repmis','PNDSIBGE','lidR','poismf','neonstore','MachineShop','mvst','MacBehaviour','mcmcderive','RGIFT','KnowBR','netmeta','spdep','sf','Rfast','compareGroups','ff','GsymPoint','RcppDynProg','comtradr','RcppDynProg','FD','PearsonDS','DCluster','gRc','mixlm','geospt','fdth','ffmanova','fiery','ffscrapr','cold','fiery','RcmdrPlugin.DoE','RcmdrPlugin.NMBU')" | base64
# crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.22 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --var SKIP_PKGS=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 --log-level=info 7 # crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.22 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --var SKIP_PKGS=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 --log-level=info 7
# crow pipeline create --var ARCH=arm64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --var SKIP_PKGS="c('RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'rFUSION')" --branch=main --log-level=info 7
# woodpecker-cli pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --log-level=info 5
# crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --log-level=info 5 # crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --log-level=info 5
# crow pipeline create --var ARCH=arm64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5
when: when:
- event: manual - event: manual
evaluate: 'task == "build-all-arm64"' evaluate: 'task == "build-all-arm64"'
@ -50,8 +49,8 @@ matrix:
# SPLIT_INDEX: 5 # SPLIT_INDEX: 5
# BACKEND: docker # BACKEND: docker
# depends_on: depends_on:
# - build-all-versions-install-deps - build-all-versions-install-deps-arm64
steps: steps:
- name: 'Build binaries' - name: 'Build binaries'
@ -60,10 +59,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -81,12 +80,9 @@ steps:
- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
commands: commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
# need to install bincraft here again as the docker backend cannot use the shared volumes
- R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git", dependencies = TRUE)'
- R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# pkgs = readRDS('/mnt/cache/pkgs_arm64.rds'); - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); source('local/packages-to-build.R'); sprintf('Total# of remaining packages:%s', length(pkgs)); pkgs <- split(pkgs, cut(seq_along(pkgs), $SPLIT_INTO, labels = F))[[$SPLIT_INDEX]]; sprintf('# of packages for this job:%s', length(pkgs)); pkgs = setdiff(pkgs, c('RInno', 'RcmdrPlugin.DoE', 'RcmdrPlugin.NMBU', 'RcmdrPlugin.ROC', 'RcmdrPlugin.RiskDemo', 'RcmdrPlugin.TeachStat', 'RcmdrPlugin.TeachingDemos', 'RcmdrPlugin.UCA', 'RcmdrPlugin.WorldFlora', 'RcmdrPlugin.aRnova', 'RcmdrPlugin.depthTools', 'RcmdrPlugin.orloca', 'RcmdrPlugin.sos', 'RcmdrPlugin.survival', 'RcmdrPlugin.temis')); foo = lapply(pkgs, function(x) bincraft::build_binary_package(x, s3_endpoint = 'https://hel1.your-objectstorage.com', tag_limit = 5L, s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE));" - $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = readRDS('/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Total# of remaining packages:%s', length(pkgs)); pkgs <- split(pkgs, cut(seq_along(pkgs), $SPLIT_INTO, labels = F))[[$SPLIT_INDEX]]; sprintf('# of packages for this job:%s', length(pkgs)); pkgs = setdiff(pkgs, c('RInno', 'RcmdrPlugin.DoE', 'RcmdrPlugin.NMBU', 'RcmdrPlugin.ROC', 'RcmdrPlugin.RiskDemo', 'RcmdrPlugin.TeachStat', 'RcmdrPlugin.TeachingDemos', 'RcmdrPlugin.UCA', 'RcmdrPlugin.WorldFlora', 'RcmdrPlugin.aRnova', 'RcmdrPlugin.depthTools', 'RcmdrPlugin.orloca', 'RcmdrPlugin.sos', 'RcmdrPlugin.survival', 'RcmdrPlugin.temis')); library(future); plan('sequential'); n = length(pkgs); foo = lapply(seq_along(pkgs), function(i) { x = pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); bincraft::build_binary_package(x, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', tag_limit = 5L, s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE) })" 2>&1
# archive missed packages # archive missed packages
- R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)" - R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)"
backend_options: backend_options:

View file

@ -0,0 +1,57 @@
when:
- event: manual
evaluate: 'task == "build-all-amd64"'
skip_clone: true
labels:
platform: linux/${ARCH}
agent: artemis
steps:
- name: 'Install deps and bincraft'
image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION}
pull: true
environment:
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
CCACHE_DIR: /mnt/cache/ccache
volumes:
- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
commands:
# one-time full wipe to fix corrupted .so files from previous failed builds
# - rm -rf /mnt/cache/R-pkgs
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft
- R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")'
- R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s packages to build', length(pkgs))"
backend_options:
docker:
resources:
requests:
memory: 5Gi
cpu: 1000m
kubernetes:
resources:
requests:
memory: 5Gi
cpu: 1000m
nodeSelector:
kubernetes.io/arch: ${ARCH}
node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
tolerations:
- key: 'CI'
operator: 'Equal'
value: 'true'
effect: 'NoSchedule'

View file

@ -0,0 +1,56 @@
when:
- event: manual
evaluate: 'task == "build-all-arm64"'
skip_clone: true
labels:
agent: gaia
steps:
- name: 'Install deps and bincraft'
image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION}
pull: true
environment:
REPO_RO_TOKEN:
from_secret: REPO_RO_TOKEN
GITHUB_PAT:
from_secret: GITHUB_PAT
B2_S3_ACCESS_KEY:
from_secret: B2_S3_ACCESS_KEY
B2_S3_SECRET_KEY:
from_secret: B2_S3_SECRET_KEY
PGPASS:
from_secret: PGPASS
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs
CCACHE_DIR: /mnt/cache/ccache
volumes:
- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
commands:
# one-time full wipe to fix corrupted .so files from previous failed builds
# - rm -rf /mnt/cache/R-pkgs
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft
- R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future")); packageVersion("bincraft")'
- R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s packages to build', length(pkgs))"
backend_options:
docker:
resources:
requests:
memory: 5Gi
cpu: 1000m
kubernetes:
resources:
requests:
memory: 5Gi
cpu: 1000m
nodeSelector:
kubernetes.io/arch: ${ARCH}
node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
tolerations:
- key: 'CI'
operator: 'Equal'
value: 'true'
effect: 'NoSchedule'

View file

@ -31,10 +31,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -52,15 +52,18 @@ steps:
from_secret: ntfy_token from_secret: ntfy_token
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
R_PKG_CACHE_DIR: /mnt/cache/pkgcache R_PKG_CACHE_DIR: /mnt/cache/pkgcache
R_LIBS_USER: /mnt/cache/R-pkgs R_LIBS_USER: /tmp/R-libs:/mnt/cache/R-pkgs
CCACHE_DIR: /mnt/cache/ccache CCACHE_DIR: /mnt/cache/ccache
NCPUS: 2 NCPUS: 2
STRATEGY: sequential STRATEGY: sequential
commands: commands:
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git . - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
- R -q -e 'packageVersion("bincraft")' - rm -rf /mnt/cache/R-pkgs/00LOCK-*
- mkdir -p /tmp/R-libs
- git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft && R CMD INSTALL --library=/tmp/R-libs /tmp/bincraft && R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); pkgs = bincraft::get_r_minor_sensitive_packages(r_minor_packages_issue_url = 'https://git.devxy.io/api/v1/repos/devxy/build-cran-binaries/issues/29'); foo = lapply(pkgs, function(x) bincraft::build_binary_package(x, is_debug = FALSE, is_r_minor_sensitive = TRUE, force = FALSE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE))" - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run)
- $XVFB -- R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); pkgs = bincraft::get_r_minor_sensitive_packages(r_minor_packages_issue_url = 'https://git.devxy.io/api/v1/repos/devxy/build-cran-binaries/issues/29'); foo = lapply(pkgs, function(x) bincraft::build_binary_package(x, is_debug = FALSE, is_r_minor_sensitive = TRUE, force = FALSE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE))" 2>&1
backend_options: backend_options:
kubernetes: kubernetes:
resources: resources:

View file

@ -13,15 +13,15 @@ labels:
steps: steps:
- name: 'Processing Updates' - name: 'Processing Updates'
image: reg.devxy.io/rpkgs/build-env-alpine:3.22-4.4.3 image: reg.devxy.io/rpkgs/build-env-alpine:3.23-4.4.3
pull: true pull: true
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -55,7 +55,7 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-321', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-321', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
backend_options: backend_options:
kubernetes: kubernetes:
resources: resources:

View file

@ -13,15 +13,15 @@ labels:
steps: steps:
- name: 'Processing Updates' - name: 'Processing Updates'
image: reg.devxy.io/rpkgs/build-env-alpine:3.22-4.4.3 image: reg.devxy.io/rpkgs/build-env-alpine:3.23-4.4.3
pull: true pull: true
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -54,6 +54,4 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-321', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-321', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"

View file

@ -18,10 +18,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -55,7 +55,7 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
backend_options: backend_options:
kubernetes: kubernetes:
resources: resources:

View file

@ -18,10 +18,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -54,6 +54,6 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-321', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-321', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"

View file

@ -18,10 +18,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -55,7 +55,7 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
backend_options: backend_options:
kubernetes: kubernetes:
resources: resources:

View file

@ -18,10 +18,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -54,6 +54,6 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-321', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-321', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"

View file

@ -18,10 +18,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -55,7 +55,7 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
backend_options: backend_options:
kubernetes: kubernetes:
resources: resources:

View file

@ -18,10 +18,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -54,6 +54,6 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"

View file

@ -18,10 +18,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -56,7 +56,7 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
backend_options: backend_options:
kubernetes: kubernetes:
resources: resources:

View file

@ -18,10 +18,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -54,6 +54,6 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"

View file

@ -18,10 +18,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -56,7 +56,7 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2204', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2204', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
backend_options: backend_options:
kubernetes: kubernetes:
resources: resources:

View file

@ -18,10 +18,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -54,6 +54,6 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2204', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2204', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"

View file

@ -18,10 +18,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -55,7 +55,7 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2404', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2404', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
backend_options: backend_options:
kubernetes: kubernetes:
resources: resources:

View file

@ -18,10 +18,10 @@ steps:
environment: environment:
RED_HAT_DEV_PW: RED_HAT_DEV_PW:
from_secret: RED_HAT_DEV_PW from_secret: RED_HAT_DEV_PW
HETZNER_S3_ACCESS_KEY_K3S: B2_S3_ACCESS_KEY:
from_secret: HETZNER_S3_ACCESS_KEY_K3S from_secret: B2_S3_ACCESS_KEY
HETZNER_S3_SECRET_KEY_K3S: B2_S3_SECRET_KEY:
from_secret: HETZNER_S3_SECRET_KEY_K3S from_secret: B2_S3_SECRET_KEY
PGPASS: PGPASS:
from_secret: PGPASS from_secret: PGPASS
REPO_RO_TOKEN: REPO_RO_TOKEN:
@ -54,6 +54,6 @@ steps:
- R -q -e 'packageVersion("bincraft")' - R -q -e 'packageVersion("bincraft")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2404', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2404', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"

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