rename to containerfile

docker/Dockerfile-redhat-9

@@ -1,48 +0,0 @@
-FROM redhat/ubi9
-
-ARG R_VERSION=4.4.1
-ARG RED_HAT_DEV_PW
-ENV PATH=/opt/R/${R_VERSION}/bin:$PATH
-ENV TZ="Europe/Berlin"
-
-ENV ARCH=arm64
-ENV NCPUS=2
-
-ARG GITHUB_PAT
-
-RUN subscription-manager register --username mail@devxy.io --password "$RED_HAT_DEV_PW" && subscription-manager repos --enable codeready-builder-for-rhel-9-$(arch)-rpms
-RUN dnf install -y https://dl.fedoraproject.org/pub/epel/epel-release-latest-9.noarch.rpm && dnf install -y epel-release
-# xvfb: for graphical pkgs requiring tcl, like gWidgets2tcltk
-# ImageMagick-c++-devel ImageMagick-devel: boths are not auto-installed via pak sysreqs
-# mecab-devel: RcppMeCab -> no autodetection yet
-# libfftw3-dev: ravetools -> actually auto-detect but somehow doesn't work in container?
-RUN dnf install -y -q make lapack-devel git gcc gcc-c++ fontconfig-devel fribidi-devel libjpeg-turbo-devel libtiff-devel postgresql-devel htop libgit2-devel libxml2-devel hiredis ccache cmake xorg-x11-server-Xvfb tk-devel ImageMagick-c++-devel ImageMagick-devel xz pkg-config mecab-devel fftw-devel
-
-### CUSTOM DEPENDENCIES 
-# These usually are not packaged in OS repositories and need to be installed from source
-# - JAGS (needed for runjags which itself is again a dependency of many packages)
-RUN curl -q -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure --enable-silent-rules && make 2>&1 && make install 2>&1 >/dev/null && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
-# - Chromium should be auto-installed once pkgdepends merges the latest system-requirements rule changes
-RUN dnf install -y chromium
-
-### INSTALL R
-RUN curl -O "https://devxy-r-builds.s3.eu-central-2.amazonaws.com/el9/R-${R_VERSION}-1-1.$(arch).rpm"
-RUN dnf install -q -y "R-${R_VERSION}-1-1.$(arch).rpm" && rm "R-${R_VERSION}-1-1.$(arch).rpm"
-RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
-
-### Makevars
-# dbarts: CFLAGS += -flax-vector-conversions (https://github.com/vdorie/dbarts/issues/66)
-# can't set ccache for gfortran because of https://gitlab.com/roigrp/solver/highs/-/issues/4
-RUN mkdir -p /root/.R && bash -c 'echo -e "CXX_STD = CXX14\nCFLAGS += -flax-vector-conversions\nCC=ccache gcc\nCPP=gcc -E\nCXXCPP=gcc -e\nCXX=ccache g++\nCXX11=ccache g++\nCXX14=ccache g++\nCXX17=ccache g++\nF77=gfortran\nFC=gfortran" >> /root/.R/Makevars'
-
-# R repos
-RUN bash -c 'echo -e "options(encoding = \"UTF-8\", crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL, repos = structure(c(CRAN = \"https://cloud.r-project.org\", INLA = \"https://inla.r-inla-download.org/R/stable\")))" > /root/.Rprofile'
-
-RUN R -q -e 'Sys.setenv("PKG_SYSREQS_PLATFORM" = "redhat-9"); pak::pak(c("DBI", "R6", "RPostgres", "Rcpp", "askpass", "base64enc", "bit64", "bit", "blob", "callr", "cli", "credentials", "curl", "data.table", "desc", "digest", "dplyr", "fansi", "fs", "future.apply", "future", "generics", "gert", "globals", "glue", "hms", "httr", "jsonlite", "lgr", "lifecycle", "listenv", "lubridate", "magrittr", "mime", "openssl", "parallelly", "paws.common", "paws.storage", "pillar", "pkgbuild", "pkgconfig", "processx", "progressr", "ps", "purrr", "rlang", "rstudioapi", "s3fs", "stringi", "stringr", "sys", "tibble", "tidyselect", "timechange", "utf8", "vctrs", "withr", "xml2", "zip", "codetools", "cranlike", "RSQLite", "cachem", "crayon", "debugme", "fastmap", "memoise", "progress", "future.callr", "dbplyr"))'
-
-COPY --link . .
-# remove secrets from COPY
-RUN touch /.Renviron /.envrc && rm /.Renviron /.envrc
-RUN R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
-
-CMD ["/bin/bash"]