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order code and skip clone

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This commit is contained in:
Patrick Schratz 2024-07-27 22:52:03 +02:00
commit f1683f5855
Signed by: pat-s
GPG key ID: 3C6318841EF78925
1 changed files with 8 additions and 5 deletions
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10
.woodpecker/build.yaml
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@ -1,6 +1,8 @@
when:
event: [push, manual]
skip_clone: true
# matrix:
# include:
# - PLATFORM: rhel-9
@ -31,7 +33,7 @@ steps:
commands:
# download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/arm64-r-binaries.git && cd arm64-r-binaries
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/arm64-r-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-arm64-r-binaries
- R -q -e 'pak::pak("dyfanjones/s3fs")'
- R -q -e 'pak::local_install(); packageVersion("rBinaries")'
@ -41,7 +43,8 @@ steps:
- R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE, PKG_SYSREQS_PLATFORM = "redhat-9"); pak::pak(c("Hmisc", "pls", "abd", "doRNG", "devtools"))'
# more complicated system dependencies which pak cannot resolve
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/binaries /mnt/cache/ccache
- R -q -e 'options(crayon.enabled = TRUE, Ncpus = 6, future.globals.onReference = "error"); pkgs = tools::CRAN_package_db()[[1]][26:40]; library(rBinaries); future::plan("multisession", workers = 5, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE))'
# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA)
- R -q -e 'options(crayon.enabled = TRUE, Ncpus = 6, future.globals.onReference = "error", repos = structure(c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"))); pkgs = tools::CRAN_package_db()[[1]][29:40]; library(rBinaries); future::plan("multisession", workers = 5, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE))'
backend_options:
kubernetes:
resources:
@ -67,9 +70,8 @@ steps:
commands:
# download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/arm64-r-binaries.git && cd arm64-r-binaries
- R -q -e 'pak::local_install(); packageVersion("rBinaries")'
- R -q -e 'pak::pak("dyfanjones/s3fs")'
- R -q -e 'pak::pak(c("dyfanjones/s3fs", "pat-s/desc@description-from-remote", "pat-s/cranlike@s3"))'
- cd /mnt/cache/binaries/__linux__/rhel9/latest/src/contrib
- R -q -e 'options(crayon.enabled = TRUE); library(rBinaries); upload_package_index()'
backend_options: