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renamings

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This commit is contained in:
Patrick Schratz 2024-09-05 13:17:47 +02:00
commit e8e69306a4
Signed by: pat-s
GPG key ID: 3C6318841EF78925
3 changed files with 6 additions and 6 deletions
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6
.woodpecker/build.yaml
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@ -45,11 +45,11 @@ steps:
commands:
# download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/arm64-r-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-arm64-r-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
# for some reason this one is often corrupt on redhat-9
- rm -rf /mnt/cache/R-pkgs/RPostgres /mnt/cache/pkgcache/R/pkgcache
- R -q -e 'devtools::install(quiet = TRUE); packageVersion("bincraftR")'
- R CMD INSTALL .
- mkdir -p /root/.R && /bin/bash -c 'echo -e "CXX_STD = CXX14\nCC=ccache gcc\nCPP=ccache gcc\nCXX=ccache g++\nCXX11=ccache g++\nCXX14=ccache g++\nCXX17=ccache g++\nF77=ccache /usr/bin/gfortran\nFC=ccache /usr/bin/gfortran" >> /root/.R/Makevars'
# manually install some packages into the cache so that some builds don't fail
# Hmisc -> ABCanalysis

4
.woodpecker/process_cran_updates.yaml
View file

@ -39,8 +39,8 @@ steps:
- arm64-binaries-r-dep-cache-${PLATFORM}:/mnt/cache
commands:
# download latest package version (avoid having to rebuild image every time)
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/arm64-r-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-arm64-r-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /opt/R/*/lib/R/library/RPostgres /mnt/cache/R-pkgs/00LOCK-RPostgres
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /opt/R/*/lib/R/library/RPostgres /mnt/cache/R-pkgs/00LOCK-RPostgres
- rm -rf /mnt/cache/R-pkgs/RPostgres /mnt/cache/pkgcache/R/pkgcache
- R -q -e 'options(Ncpus = 4, repos = structure(c(devxy = "https://cran.devxy.io/${ARCH}/${PKGS_ID}/latest", CRAN = "https://cloud.r-project.org"))); devtools::install(quiet = TRUE); packageVersion("bincraftR")'
- mkdir -p /root/.R && /bin/bash -c 'echo -e "CXX_STD = CXX14\nCC=ccache gcc\nCPP=ccache gcc\nCXX=ccache g++\nCXX11=ccache g++\nCXX14=ccache g++\nCXX17=ccache g++\nF77=ccache /usr/bin/gfortran\nFC=ccache /usr/bin/gfortran" >> /root/.R/Makevars'

2
.woodpecker/update-package-index.yaml
View file

@ -26,7 +26,7 @@ steps:
commands:
# download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/arm64-r-binaries.git .
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
- rm -rf /mnt/cache/packages/*
- R -q -e 'devtools::install(); packageVersion("bincraftR")'
- R -q -e 'pak::pak(c("pat-s/desc@description-from-remote", "pat-s/cranlike@s3"))'