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Patrick Schratz 2024-11-22 22:49:25 +01:00
commit e81140f1cc
Signed by: pat-s
GPG key ID: 3C6318841EF78925
1 changed files with 12 additions and 10 deletions
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.woodpecker/build-ubuntu-2204-amd64.yaml
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@ -46,7 +46,7 @@ steps:
# - Rsymphony/ROI.plugin.symphony/adea/PortfolioAnalytics -> can't install/link external SYMPHONY lib (only on RHEL, as for others syslib exists)
# - Rglpk
# biplotbootGUI: somehow ubuntu still hangs even when using xvfb-run
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(devxy = 'https://cran.devxy.io/amd64/jammy/latest', CRAN = 'https://cloud.r-project.org'))); library(dplyr); library(bincraftR); cran_pkgs = tools::CRAN_package_db()[['Package']]; '%nin%' <- Negate('%in%'); foo = query_metadata_table() |> filter(platform == 'ubuntu-2204', arch == 'amd64') |> distinct(name) |> pull(name); pkgs <- dput(cran_pkgs[cran_pkgs %nin% foo][0:300]); options(progressr.enable = TRUE); pkgs = c('abmR', 'asremlPlus', 'assocInd', 'AST', 'atakrig', 'AtlasMaker', 'atmopt', 'atom4R', 'atpolR', 'audrex', 'audubon', 'augmentedRCBD', 'AurieLSHGaussian', 'auRoc', 'ausplotsR', 'autoEnsemble', 'autoharp', 'automap', 'autoMFA', 'AutoPipe', 'autoReg', 'autostats', 'autothresholdr', 'autoTS', 'AVGAS', 'avotrex', 'AWR.Kinesis', 'aws', 'aws.wrfsmn', 'AZIAD', 'b64', 'babette', 'BACCT', 'bacistool', 'backShift', 'badgen', 'baggr', 'baker', 'bakR', 'baldur', 'BallMapper', 'bamdit', 'bamm', 'BANAM', 'bang', 'bangladesh', 'BANOVA', 'banter', 'baorista', 'bartMachine', 'bartMachineJARs', 'bartMan', 'baRulho', 'basf', 'basifoR', 'BASiNET', 'BASiNETEntropy', 'basket', 'BasketballAnalyzeR', 'baskexact', 'basksim', 'bate', 'BAwiR', 'bayclumpr', 'Bayenet', 'bayes4psy', 'BayesCACE', 'bfw', 'BiBitR', 'BifactorIndicesCalculator', 'bigBits', 'bigGP', 'biocompute', 'biospear', 'BiplotGUI', 'blatr', 'BRugs', 'clrng', 'CoTiMA', 'deeptrafo', 'excel.link', 'FastRWeb', 'filters', 'gllvm', 'gpuR', 'highd2means', 'KeyboardSimulator', 'lgpr', 'MDSGUI', 'MediaNews', 'mixcat', 'MPCR', 'netShiny', 'nevada', 'NFCP', 'nfl4th', 'nflverse', 'NGCHM', 'NIMAA', 'nlcv', 'nlmixr2rpt', 'noaastormevents', 'NoviceDeveloperResources2', 'npcurePK', 'npi', 'nRegression', 'nucim', 'numbat', 'oceanmap', 'ondisc', 'One4All', 'onelogin', 'OpenCL', 'opencv', 'opendatatoronto', 'openmeteo', 'openVA', 'R2PPT', 'R2wd', 'ravetools', 'Rcplex', 'RcppCWB', 'rFUSION', 'RWinEdt', 'spectrino', 'taskscheduleR'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2204'))"
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(devxy = 'https://cran.devxy.io/amd64/jammy/latest', CRAN = 'https://cloud.r-project.org'))); library(dplyr); library(bincraftR); cran_pkgs = tools::CRAN_package_db()[['Package']]; '%nin%' <- Negate('%in%'); foo = query_metadata_table() |> filter(platform == 'ubuntu-2204', arch == 'amd64') |> distinct(name) |> pull(name); pkgs <- dput(cran_pkgs[cran_pkgs %nin% foo][0:300]); options(progressr.enable = TRUE); pkgs = c('leidenbase', 'lgpr', 'MDSGUI', 'MediaNews', 'mixcat', 'MonoPhy', 'MPCR', 'netShiny', 'nevada', 'NFCP', 'nfl4th', 'nflverse', 'NGCHM', 'NIMAA', 'nlcv', 'nlmixr2rpt', 'noaastormevents', 'NoviceDeveloperResources2', 'npcurePK', 'npi', 'nRegression', 'nucim', 'numbat', 'oaqc', 'oceanmap', 'ondisc', 'One4All', 'onelogin', 'OpenCL', 'opencv', 'opendatatoronto', 'openmeteo', 'openVA', 'R2PPT', 'R2wd', 'ravetools', 'Rcatch22', 'Rcplex', 'RcppCWB', 'rFUSION', 'RInno', 'rmarchingcubes', 'RmecabKo', 'ROI.plugin.cplex', 'ROI.plugin.qpoases', 'ROI.plugin.symphony', 'ROracle', 'Rsymphony', 'RWinEdt', 'SegEnvIneq', 'skedastic', 'spectrino', 'taskscheduleR', 'theft', 'theftdlc', 'TML', 'trtswitch', 'ursa'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'CoTiMA', 'later')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2204'))"
### Manual pkg builds
# webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
# RInno: Windows-only