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add parallel execution

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This commit is contained in:
Patrick Schratz 2024-06-02 15:17:33 +02:00
commit de2d7878e3
Signed by: pat-s
GPG key ID: 3C6318841EF78925
1 changed files with 116 additions and 38 deletions
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exec.sh Executable file
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# bootstrap
# NB: ranger requires CXX14, R 4.0.5 still uses CXX11
export R_VERSION=4.0.5
export R_PROGRESSR_ENABLE=TRUE
/opt/R/$R_VERSION/bin/R
mkdir $HOME/.R && echo -e 'CXX_STD = CXX14\n\nVER=\nCCACHE=ccache\nCC=$(CCACHE) gcc$(VER) -std=gnu99\nCXX=$(CCACHE) g++$(VER)\nC11=$(CCACHE) g++$(VER)\nC14=$(CCACHE) g++$(VER)\nFC=$(CCACHE) gfortran$(VER)\nF77=$(CCACHE) gfortran$(VER)' > $HOME/.R/Makevars
mkdir $HOME/.ccache && echo -e 'max_size = 5.0G\nsloppiness = include_file_ctime\nhash_dir=false' > $HOME/.ccache/ccache.conf
/opt/R/$R_VERSION/bin/R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
/opt/R/$R_VERSION/bin/R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE); Sys.setenv(PKG_SYSREQS_VERBOSE = TRUE); pak::pak("devtools")'
/opt/R/$R_VERSION/bin/R -q -e 'setwd("/home/pjs/rBinaries"); Sys.setenv(PKG_SYSREQS = TRUE); Sys.setenv(PKG_SYSREQS_VERBOSE = TRUE); pak::local_install_dev_deps()'
/opt/R/$R_VERSION/bin/R -q -e 'setwd("/home/pjs/rBinaries"); pak::pak(c("future", "future.apply"))'
# single tag
/opt/R/$R_VERSION/bin/R -q -e 'setwd("/home/pjs/rBinaries"); devtools::load_all(); build_binary_package("mlr3filters", tag = "0.5.0", install_system_dependencies=FALSE)'
# all tags (sequential)
/opt/R/$R_VERSION/bin/R -q -e 'setwd("/home/pjs/rBinaries"); devtools::load_all(); build_binary_package("mlr3filters", install_system_dependencies=FALSE)'
# all tags (parallel)
/opt/R/$R_VERSION/bin/R -q -e 'setwd("/home/pjs/rBinaries"); devtools::load_all(); future::plan("multicore", workers = 2); build_binary_package("mlr3filters", install_system_dependencies=FALSE);'
# execute
rsync -a ~/git/homelab/rBinaries homelab-de:/home/pjs/
ssh homelab-de "cd /home/pjs/rBinaries; /opt/R/$R_VERSION/bin/R -q -e \"devtools::load_all(); build_binary_package('mlr3filters', tag = '0.8.0')\""