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ci: configure hook exclusions and fix README lint (MD040/MD056)

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This commit is contained in:
Patrick Schratz 2026-06-13 21:23:36 +02:00
commit cf851c1c30
Signed by: pat-s
GPG key ID: 3C6318841EF78925
6 changed files with 50 additions and 23 deletions
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4
.editorconfig
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@ -11,6 +11,10 @@ insert_final_newline = true
[*.md] [*.md]
trim_trailing_whitespace = false trim_trailing_whitespace = false
# Markdown code fences hold verbatim content (logs, snippets) whose
# indentation must not be forced to the source indent rules.
indent_style = unset
indent_size = unset
# Ignore paths # Ignore paths
[/collections/ansible_collections/community/**] [/collections/ansible_collections/community/**]

8
.editorconfig-checker.json Normal file
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@ -0,0 +1,8 @@
{
"Exclude": [
"^LICENSE\\.md$",
"^benchmark/",
"^docker/reprex/",
"^\\.crow/build-r-minor-sensitive-packages\\.yaml$"
]
}

4
.markdownlint-cli2.yaml Normal file
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@ -0,0 +1,4 @@
# Rules live in .markdownlint.yaml; this file only sets cli2 options.
ignores:
- LICENSE.md
- docs/superpowers/**

9
.pre-commit-config.yaml
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@ -1,4 +1,13 @@
# cSpell:ignore autofix autoupdate # cSpell:ignore autofix autoupdate
# Excluded: verbatim GPL license, auxiliary shell scripts with intentional
# in-string formatting, and the soon-to-be-removed standalone workflow.
exclude: |
(?x)^(
LICENSE\.md|
benchmark/|
docker/reprex/|
\.crow/build-r-minor-sensitive-packages\.yaml
)
repos: repos:
- repo: https://github.com/pre-commit/pre-commit-hooks - repo: https://github.com/pre-commit/pre-commit-hooks
rev: v6.0.0 rev: v6.0.0

2
.prettierignore Normal file
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@ -0,0 +1,2 @@
LICENSE.md
.crow/build-r-minor-sensitive-packages.yaml

46
README.md
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@ -186,19 +186,19 @@ Below is a collection of raw errors observed during the build process:
<details> <details>
``` ```text
* installing to library '/tmp/Rtmp7WPw19/temp_libpath114b846b58'\n* installing *source* package 'ade4' ...\n** using staged installation\nERROR: a 'NAMESPACE' file is required\n* removing '/tmp/Rtmp7WPw19/temp_libpath114b846b58/ade4'\n" * installing to library '/tmp/Rtmp7WPw19/temp_libpath114b846b58'\n* installing *source* package 'ade4' ...\n** using staged installation\nERROR: a 'NAMESPACE' file is required\n* removing '/tmp/Rtmp7WPw19/temp_libpath114b846b58/ade4'\n"
``` ```
Tag does not have a NAMESPACE file and hence cannot be built. Tag does not have a NAMESPACE file and hence cannot be built.
``` ```text
"* installing to library '/tmp/RtmpLcCitS/temp_libpath1146aabbe92'\nERROR: dependency 'tripack' is not available for package 'alphahull'\n* removing '/tmp/RtmpLcCitS/temp_libpath1146aabbe92/alphahull'\n" "* installing to library '/tmp/RtmpLcCitS/temp_libpath1146aabbe92'\nERROR: dependency 'tripack' is not available for package 'alphahull'\n* removing '/tmp/RtmpLcCitS/temp_libpath1146aabbe92/alphahull'\n"
``` ```
Dependency not available: Either because the dependency was not declared or errored itself during installation. Dependency not available: Either because the dependency was not declared or errored itself during installation.
``` ```text
In function '\033[01m\033[KRcpp::List solveRRBLUP(const mat&, const mat&, const mat&)\033[m\033[K':\n\033[01m\033[KMME.cpp:162:61:\033[m\033[K \033[01;31m\033[Kerror: \033[m\033[K'\033[01m\033[KPI\033[m\033[K' was not declared in this scope\n 162 | double ll = -0.5*(double(optRes[\"objective\"])+df+df*log(2*\033[01;31m\033[KPI\033[m\033[K/df));\n | \033[01;31m\033[K^~\033[m\033[K\n\033[01m\033[KMME.cpp:\033[m\033[K In function '\033[01m\033[KRcpp::List solveRRBLUPMV(const mat&, const mat&, const mat&, int, double)\033[m\033[K':\n\033[01m\033[KMME.cpp:277:31:\033[m\033[K \033[01;31m\033[Kerror: \033[m\033[K'\033[01m\033[KPI\033[m\033[K' was not declared in this scope; did you mean '\033[01m\033[KHI\033[m\033[K'?\n 277 | ll -= double(n*m)/2.0*log(2*\033[01;31m\033[KPI\033[m\033[K);\n | \033[01;31m\033[K^~\033[m\033[K\n | \033[32m\033[KHI\033[m\033[K\nmake: *** [/opt/R/4.4.1/lib/R/etc/Makeconf:204: MME.o] Error 1\nERROR: compilation failed for package 'AlphaSimR'\n* removing '/tmp/RtmpclI5CE/temp_libpath11135d215d5/AlphaSimR'\n In function '\033[01m\033[KRcpp::List solveRRBLUP(const mat&, const mat&, const mat&)\033[m\033[K':\n\033[01m\033[KMME.cpp:162:61:\033[m\033[K \033[01;31m\033[Kerror: \033[m\033[K'\033[01m\033[KPI\033[m\033[K' was not declared in this scope\n 162 | double ll = -0.5*(double(optRes[\"objective\"])+df+df*log(2*\033[01;31m\033[KPI\033[m\033[K/df));\n | \033[01;31m\033[K^~\033[m\033[K\n\033[01m\033[KMME.cpp:\033[m\033[K In function '\033[01m\033[KRcpp::List solveRRBLUPMV(const mat&, const mat&, const mat&, int, double)\033[m\033[K':\n\033[01m\033[KMME.cpp:277:31:\033[m\033[K \033[01;31m\033[Kerror: \033[m\033[K'\033[01m\033[KPI\033[m\033[K' was not declared in this scope; did you mean '\033[01m\033[KHI\033[m\033[K'?\n 277 | ll -= double(n*m)/2.0*log(2*\033[01;31m\033[KPI\033[m\033[K);\n | \033[01;31m\033[K^~\033[m\033[K\n | \033[32m\033[KHI\033[m\033[K\nmake: *** [/opt/R/4.4.1/lib/R/etc/Makeconf:204: MME.o] Error 1\nERROR: compilation failed for package 'AlphaSimR'\n* removing '/tmp/RtmpclI5CE/temp_libpath11135d215d5/AlphaSimR'\n
``` ```
@ -230,26 +230,26 @@ For others it might be due to exotic external dependencies which require manual
Help in resolving these issues are highly welcome! Help in resolving these issues are highly welcome!
| Name | Platform | Arch | Reason | Solved via | Date Created | Date Solved | | Name | Platform | Arch | Reason | Date Created | Date Solved |
| ------------- | -------------- | ------- | -------------------------------- | ---------- | ------------ | ----------- | | ------------- | -------------- | ------- | -------------------------------- | ------------ | ----------- |
| Apollonius | redhat-8 | | gmp missing | 2024-11-15 | | | Apollonius | redhat-8 | | gmp missing | 2024-11-15 | |
| doBy | alpine-320 | amd | hangs | 2024-11-23 | | | doBy | alpine-320 | amd | hangs | 2024-11-23 | |
| later | ubuntu 22 & 24 | amd | hangs for early versions - xfvb? | 2024-11-23 | | | later | ubuntu 22 & 24 | amd | hangs for early versions - xfvb? | 2024-11-23 | |
| CoTiMA | ubuntu 22 & 24 | amd | OOM? | 2024-11-23 | | | CoTiMA | ubuntu 22 & 24 | amd | OOM? | 2024-11-23 | |
| FrF2 | alpine | arm | hangs | 2024-11-23 | | | FrF2 | alpine | arm | hangs | 2024-11-23 | |
| FrF2.catlg128 | alpine | arm | hangs | 2024-11-23 | | | FrF2.catlg128 | alpine | arm | hangs | 2024-11-23 | |
| DoE.base | alpine | arm/amd | hangs | 2024-11-23 | | | DoE.base | alpine | arm/amd | hangs | 2024-11-23 | |
| eha | alpine | amd | hangs | 2024-11-23 | | | eha | alpine | amd | hangs | 2024-11-23 | |
| gRain | alpine | amd | hangs | 2024-11-23 | | | gRain | alpine | amd | hangs | 2024-11-23 | |
| gRbase | alpine | amd | hangs | 2024-11-24 | | | gRbase | alpine | amd | hangs | 2024-11-24 | |
| IDPmisc | alpine | amd | hangs | 2024-11-24 | | | IDPmisc | alpine | amd | hangs | 2024-11-24 | |
| RVAideMemoire | alpine | amd | hangs | 2024-11-25 | | | RVAideMemoire | alpine | amd | hangs | 2024-11-25 | |
| pbkrtest | alpine | arm | hangs | 2024-11-25 | | | pbkrtest | alpine | arm | hangs | 2024-11-25 | |
| seewave | alpine | arm | hangs | 2024-11-25 | | | seewave | alpine | arm | hangs | 2024-11-25 | |
| spdep | alpine | arm | hangs | 2024-12-03 | | | spdep | alpine | arm | hangs | 2024-12-03 | |
| compareGroups | alpine | arm | hangs | 2024-12-11 | | | compareGroups | alpine | arm | hangs | 2024-12-11 | |
| SNPassoc | alpine | arm | hangs | 2024-12-11 | | | SNPassoc | alpine | arm | hangs | 2024-12-11 | |
| surveillance | alpine | arm | hangs | 2024-12-13 | | | surveillance | alpine | arm | hangs | 2024-12-13 | |
## CDN Settings ## CDN Settings