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Code Issues 10 Pull requests Releases Activity

don't index package_name as list

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This commit is contained in:
Patrick Schratz 2024-09-23 15:10:13 +02:00
commit c0b8fd67f9
Signed by: pat-s
GPG key ID: 3C6318841EF78925
3 changed files with 6 additions and 5 deletions
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2
.woodpecker/build.yaml
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@ -100,7 +100,7 @@ steps:
# - Rsymphony/ROI.plugin.symphony/adea/PortfolioAnalytics -> can't install/link external SYMPHONY lib (only on RHEL, as for others syslib exists)
# - Rglpk
# biplotbootGUI: somehow ubuntu still hangs even when using xvfb-run
- R -q -e 'options(crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL); pkgs = tools::CRAN_package_db()[[1]]; pkgs = setdiff(pkgs[${BLOCK}], c("biplotbootGUI", "Rsymphony", "PortfolioAnalytics", "ROI.plugin.symphony", "adea", "RInno", "skedastic", "RPushbullet", "SimNPH", "SimDesign","simCAT", "SIAmodules", "shinytest2", "shinyIRT", "ShinyItemAnalysis", "shiny.benchmark", "scDIFtest", "RSP", "ROracle", "ROI.plugin.qpoases", "ROI.plugin.cplex", "RmecabKo", "rmarchingcubes", "RcppMeCab", "Rcplex", "ravetools", "Rbeast", "Rblpapi", "RcppEnsmallen", "qtkit", "priorCON", "prior3D", "PerFit", "outlierensembles", "nomnoml", "mxfda", "MultBiplotR", "mstDIF", "mdsr", "makepipe", "lordif", "KSgeneral", "kequate", "jstager", "jrt", "irtreliability", "irtQ", "irtpwr", "irtawsi", "GRShiny", "gpuR", "googletraffic", "giacR", "gamstransfer", "flps", "flow", "filters", "faoutlier", "equateIRT", "EnrichIntersect", "EFA.dimensions", "DFIT", "D3mirt", "ctgdist", "CoTiMA", "ConvertPar", "clrng", "bscui", "BifactorIndicesCalculator", "autoFC", "airt")); library(bincraftR); future::plan("${STRATEGY}", workers = ${NCPUS}, rscript_startup = quote(options(crayon.enabled = TRUE))); options(progressr.enable = TRUE); progressr::handlers("cli"); progressr::handlers(global = TRUE); pkgs = foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE, platform = "${PLATFORM}"))'
- xvfb-run R -q -e 'options(crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL); pkgs = tools::CRAN_package_db()[[1]]; pkgs = setdiff(pkgs[${BLOCK}], c("biplotbootGUI", "Rsymphony", "PortfolioAnalytics", "ROI.plugin.symphony", "adea", "RInno", "skedastic", "RPushbullet", "SimNPH", "SimDesign","simCAT", "SIAmodules", "shinytest2", "shinyIRT", "ShinyItemAnalysis", "shiny.benchmark", "scDIFtest", "RSP", "ROracle", "ROI.plugin.qpoases", "ROI.plugin.cplex", "RmecabKo", "rmarchingcubes", "RcppMeCab", "Rcplex", "ravetools", "Rbeast", "Rblpapi", "RcppEnsmallen", "qtkit", "priorCON", "prior3D", "PerFit", "outlierensembles", "nomnoml", "mxfda", "MultBiplotR", "mstDIF", "mdsr", "makepipe", "lordif", "KSgeneral", "kequate", "jstager", "jrt", "irtreliability", "irtQ", "irtpwr", "irtawsi", "GRShiny", "gpuR", "googletraffic", "giacR", "gamstransfer", "flps", "flow", "filters", "faoutlier", "equateIRT", "EnrichIntersect", "EFA.dimensions", "DFIT", "D3mirt", "ctgdist", "CoTiMA", "ConvertPar", "clrng", "bscui", "BifactorIndicesCalculator", "autoFC", "airt")); library(bincraftR); future::plan("${STRATEGY}", workers = ${NCPUS}, rscript_startup = quote(options(crayon.enabled = TRUE))); options(progressr.enable = TRUE); progressr::handlers("cli"); progressr::handlers(global = TRUE); pkgs = foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE, platform = "${PLATFORM}"))'
### Manual pkg builds
# webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
# RInno: Windows-only

3
R/archive_packages.R
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@ -3,7 +3,7 @@
#' @export
#' @examples
#' archive_package("AATtools", codename = "rhel9")
#' archive_package("asbio", codename = "rhel9", arch = "amd64")
#' archive_package("adw", codename = "rhel8", arch = "amd64")
#'
archive_package <- function(
package_name,
@ -57,6 +57,7 @@ archive_package <- function(
all_versions <- grep(sprintf("/%s_", .x), files, value = TRUE)
# only archive if more than one package exists in the root
if (length(all_versions) > 1) {
# get most recent version from CRAN
last_version <- available.packages("https://cloud.r-project.org/src/contrib")[.x, "Version"]
# check if last version is available in repo

6
R/build_binaries.R
View file

@ -81,7 +81,7 @@ build_binary_package <- function(package_name, tag = NULL, codename = NULL,
t1 <- Sys.time()
cli::cli_h2("Building ({.pkg {package_name[1]}})")
cli::cli_alert("[{format(Sys.time(), format='%H:%M:%S')}] Building binaries for {.pkg {package_name[[1]]}} with tags {.field {tag}}.")
cli::cli_alert("[{format(Sys.time(), format='%H:%M:%S')}] Building binaries for {.pkg {package_name[1]}} with tags {.field {tag}}.")
future::plan(future_strategy,
workers = future_workers,
@ -125,7 +125,7 @@ build_binary_package <- function(package_name, tag = NULL, codename = NULL,
)
total_build_time <- round(Sys.time() - t1, 2)
cli::cli_alert("Execution time ({.pkg {package_name[[1]]}}) ({length(tag)} tags): {.strong {total_build_time} {units(difftime(Sys.time(), t1))}}.")
cli::cli_alert("Execution time ({.pkg {package_name[1]}}) ({length(tag)} tags): {.strong {total_build_time} {units(difftime(Sys.time(), t1))}}.")
cli::cli_h2("Uploading ({.pkg {package_name[1]}})")
# out <- progressr::with_progress({
@ -145,7 +145,7 @@ build_binary_package <- function(package_name, tag = NULL, codename = NULL,
})
if (archive) {
archive_package(package_name[[1]])
archive_package(package_name[1])
}
return(invisible(TRUE))
}