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Code Issues 11 Pull requests Releases Activity

do not persist binaries after build

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This commit is contained in:
Patrick Schratz 2024-07-27 23:45:06 +02:00
commit b589e15764
Signed by: pat-s
GPG key ID: 3C6318841EF78925
3 changed files with 4 additions and 4 deletions
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4
.woodpecker/build.yaml
View file

@ -42,7 +42,7 @@ steps:
# Hmisc -> ABCanalysis # Hmisc -> ABCanalysis
- R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE, PKG_SYSREQS_PLATFORM = "redhat-9"); pak::pak(c("Hmisc", "pls", "abd", "doRNG", "devtools"))' - R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE, PKG_SYSREQS_PLATFORM = "redhat-9"); pak::pak(c("Hmisc", "pls", "abd", "doRNG", "devtools"))'
# more complicated system dependencies which pak cannot resolve # more complicated system dependencies which pak cannot resolve
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/binaries /mnt/cache/ccache - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/binaries /mnt/cache/ccache /mnt/cache/packages
# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA) # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA)
- R -q -e 'options(crayon.enabled = TRUE, Ncpus = 6, future.globals.onReference = "error", repos = structure(c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"))); pkgs = tools::CRAN_package_db()[[1]][29:40]; library(rBinaries); future::plan("multisession", workers = 5, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE))' - R -q -e 'options(crayon.enabled = TRUE, Ncpus = 6, future.globals.onReference = "error", repos = structure(c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"))); pkgs = tools::CRAN_package_db()[[1]][29:40]; library(rBinaries); future::plan("multisession", workers = 5, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE))'
backend_options: backend_options:
@ -72,7 +72,7 @@ steps:
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- R -q -e 'pak::local_install(); packageVersion("rBinaries")' - R -q -e 'pak::local_install(); packageVersion("rBinaries")'
- R -q -e 'pak::pak(c("dyfanjones/s3fs", "pat-s/desc@description-from-remote", "pat-s/cranlike@s3"))' - R -q -e 'pak::pak(c("dyfanjones/s3fs", "pat-s/desc@description-from-remote", "pat-s/cranlike@s3"))'
- cd /mnt/cache/binaries/__linux__/rhel9/latest/src/contrib - cd /mnt/cache/packages
- R -q -e 'options(crayon.enabled = TRUE); library(rBinaries); upload_package_index()' - R -q -e 'options(crayon.enabled = TRUE); library(rBinaries); upload_package_index()'
backend_options: backend_options:
kubernetes: kubernetes:

2
R/build_binaries.R
View file

@ -9,7 +9,7 @@
#' @export #' @export
build_binary_package <- function(package_name, tag = NULL, codename = NULL, build_binary_package <- function(package_name, tag = NULL, codename = NULL,
r_minor_version = NULL, build_for_minor = TRUE, r_minor_version = NULL, build_for_minor = TRUE,
local_build_root = "/mnt/cache/binaries/", local_build_root = "/root",
local_clone_dir = "/tmp", local_clone_dir = "/tmp",
platform = "redhat-9", platform = "redhat-9",
install_system_dependencies = TRUE, install_system_dependencies = TRUE,

2
R/upload.R
View file

@ -4,7 +4,7 @@ upload_single_binary_to_s3 <- function(
endpoint = "https://s3.eu-central-003.backblazeb2.com", endpoint = "https://s3.eu-central-003.backblazeb2.com",
region = "eu-central-003", region = "eu-central-003",
bucket = "devxy-arm64-r-binaries", bucket = "devxy-arm64-r-binaries",
local_build_root = "/mnt/cache/binaries/", local_build_root = "/root",
codename = NULL, codename = NULL,
package_name, tag, package_name, tag,
r_minor_version = NULL, build_for_minor = FALSE, r_minor_version = NULL, build_for_minor = FALSE,