tryCatch error in pkgbuild::build

.woodpecker/build.yaml

@@ -49,13 +49,20 @@ steps:
       - R -q -e 'options(crayon.enabled = TRUE, Ncpus = 6, future.globals.onReference = "error", repos = structure(c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"))); pkgs = tools::CRAN_package_db()[[1]][${BLOCK}]; library(rBinaries); future::plan("multisession", workers = 6, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = TRUE, force = TRUE))'
     backend_options:
       kubernetes:
+        # resources:
+        #   requests:
+        #     memory: 25Gi
+        #     cpu: 12000m
+        #   limits:
+        #     memory: 28Gi
+        #     cpu: 16000m
         resources:
           requests:
-            memory: 25Gi
+            memory: 4Gi
-            cpu: 12000m
+            cpu: 2000m
           limits:
-            memory: 28Gi
+            memory: 4Gi
-            cpu: 16000m
+            cpu: 2000m
         nodeSelector:
           kubernetes.io/arch: 'arm64'
   - name: Upload PACKAGES files

R/build_binaries.R

@@ -69,7 +69,7 @@ build_binary_package <- function(package_name, tag = NULL, codename = NULL,
       },
       # NB: here we need to use conditionMessage() to extract the actual error - as opposed to using $stderr for errors within the tryCatch used in the future* calls
       error = function(e) {
-        message(sprintf("Error in installing dependencies for package %s with tag %s: %s", package_name[1], tag[1], e))
+        cli::cli_alert_warning("Error in installing dependencies for package {.pkg {package_name{1]}} with tag {.field {tag[1]}}: {e}")
         store_build_metadata(package_name[1], tag[1], platform, error_occurred = TRUE, force = TRUE, error = conditionMessage(e))
         return(TRUE)
       }
@@ -101,7 +101,7 @@ build_binary_package <- function(package_name, tag = NULL, codename = NULL,
           dbDisconnect(con)
         },
         error = function(e) {
-          message(sprintf("Error in processing package %s with tag %s: %s", x, y, e))
+          cli::cli_alert_warning("Error in starting build command for package {.pkg {package_name}} with tag {.field {tag}}: {e}")
           local_clone_dir_single <- sprintf("%s/%s_%s", local_clone_dir, x, y)
           unlink(local_clone_dir_single, force = TRUE, recursive = TRUE)
           # only stderr contains the important information why the build failed
@@ -159,15 +159,26 @@ build_single_tag <- function(
     cli::cli_alert("{.fun build_single_tag}: (2/3) Building package {.pkg {package_name}} with tag {.field {tag}}.")
 
     t1 <- Sys.time()
-    dump <- pkgbuild::build(
+    tryCatch(
-      path = sprintf("%s", local_clone_dir_single),
+      {
-      binary = TRUE, vignettes = FALSE,
+        dump <- pkgbuild::build(
-      dest_path = dir_out_bin, quiet = TRUE
+          path = sprintf("%s", local_clone_dir_single),
+          binary = TRUE, vignettes = FALSE,
+          dest_path = dir_out_bin, quiet = TRUE
+        )
+      },
+      error = function(e) {
+        cli::cli_alert_warning("Error in starting build command for package {.pkg {package_name}} with tag {.field {tag}}: {e}")
+        local_clone_dir_single <- sprintf("%s/%s_%s", local_clone_dir, package_name, tag)
+        unlink(local_clone_dir_single, force = TRUE, recursive = TRUE)
+        store_build_metadata(package_name, tag, platform, error_occurred = TRUE, force = TRUE, error = "Error trying to initiate pkgbuild - likely a non-valid R package structure")
+        return(invisible(TRUE))
+      }
     )
 
     if (!file.exists(sprintf("%s/%s_%s.tar.gz", dir_out_bin, package_name, tag))) {
       if (debug) {
-        cli::cli_alert_info('{.fun build_single_tag}: Moving package from {.path {sprintf("%s/%s_%s_R_aarch64-unknown-linux-gnu.tar.gz", dir_out_bin, package_name, tag))}} to {.path {sprintf("%s/%s_%s.tar.gz", dir_out_bin, package_name, tag)}}')
+        cli::cli_alert_info('{.fun build_single_tag}: Moving package from {.path {sprintf("%s/%s_%s_R_aarch64-unknown-linux-gnu.tar.gz", dir_out_bin, package_name, tag)}} to {.path {sprintf("%s/%s_%s.tar.gz", dir_out_bin, package_name, tag)}}')
       }
       # double-check that file exists (some packages like https://github.com/cran/BACCO/tree/1.0-14 don't include R/ and hence don't procude a valid binary)
       if (fs::file_exists(sprintf("%s/%s_%s_R_aarch64-unknown-linux-gnu.tar.gz", dir_out_bin, package_name, tag))) {
@@ -177,7 +188,7 @@ build_single_tag <- function(
           sprintf("%s/%s_%s.tar.gz", dir_out_bin, package_name, tag)
         )
       } else {
-        cli::cli_alert_info('{.fun build_single_tag}: File for package {.pkg {package_name}} {.field {tag}} at {.path {sprintf("%s/%s_%s_R_aarch64-unknown-linux-gnu.tar.gz", dir_out_bin, package_name, tag))}} does not exist - skipping.')
+        cli::cli_alert_info('{.fun build_single_tag}: File for package {.pkg {package_name}} {.field {tag}} at {.path {sprintf("%s/%s_%s_R_aarch64-unknown-linux-gnu.tar.gz", dir_out_bin, package_name, tag)}} does not exist - skipping.')
       }
     } else {
       cli::cli_alert_warning('{.fun build_single_tag}: Binary {sprintf("%s_%s.tar.gz", package_name, tag)} already exists. Skipping copy.')