remove secrets from COPY
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989f7766ed
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3C6318841EF78925
5 changed files with 31 additions and 17 deletions
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@ -1,6 +1,7 @@
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FROM alpine:3.20
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ENV PATH=/opt/R/4.4.1/bin:$PATH
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ARG R_VERSION=4.4.1
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ENV PATH=/opt/R/${R_VERSION}/bin:$PATH
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ENV TZ="Europe/Berlin"
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ARG ARCH=arm64
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@ -10,7 +11,6 @@ ENV AWS_ACCESS_KEY_ID=""
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ENV AWS_SECRET_ACCESS_KEY=""
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ENV PGPASS=""
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ARG GITHUB_PAT
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# Background: JAGS needs lapack & lapack-dev but these conflict with openblas-dev which is required by R-dev
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@ -38,11 +38,11 @@ RUN mkdir -p ~/.R && bash -c 'echo -e "CXXFLAGS+=-D__MUSL__\nCPPFLAGS+= -D__MUSL
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# R repos
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RUN bash -c 'echo -e "options(crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL, repos = structure(c(CRAN = \"https://cloud.r-project.org\", INLA = \"https://inla.r-inla-download.org/R/stable\")))" > /root/.Rprofile'
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RUN bash -c 'echo -e "PKG_SYSREQS = TRUE\nPKG_SYSREQS_VERBOSE = TRUE" > /root/.Renviron'
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RUN bash -c 'echo -e "PKG_SYSREQS=TRUE\nPKG_SYSREQS_VERBOSE=TRUE" > ~/.Renviron'
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### INSTALL R
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RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/alpine320/r-4.4.1_1_$(arch).apk
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RUN apk add --allow-untrusted r-4.4.1_1_$(arch).apk && rm r-4.4.1_1_$(arch).apk
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RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/alpine320/r-${R_VERSION}_1_$(arch).apk
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RUN apk add --allow-untrusted r-${R_VERSION}_1_$(arch).apk && rm r-${R_VERSION}_1_$(arch).apk
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RUN R -q -e 'install.packages("remotes", repo = "cloud.r-project.org"); remotes::install_github("pat-s/pak@alpine")'
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@ -51,6 +51,8 @@ RUN R -q -e 'install.packages("remotes", repo = "cloud.r-project.org"); remotes:
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RUN R -q -e 'pak::pak(c("DBI", "R6", "RPostgres", "Rcpp", "askpass", "base64enc", "bit64", "bit", "blob", "callr", "cli", "credentials", "curl", "data.table", "digest", "dplyr", "fansi", "fs", "future.apply", "future", "generics", "gert", "globals", "glue", "hms", "httr", "jsonlite", "lgr", "lifecycle", "listenv", "lubridate", "magrittr", "mime", "openssl", "parallelly", "paws.common", "paws.storage", "pillar", "pkgbuild", "pkgconfig", "processx", "progressr", "ps", "purrr", "rlang", "rstudioapi","s3fs", "stringi", "stringr", "sys", "tibble", "tidyselect", "timechange", "utf8", "vctrs", "withr", "xml2", "zip", "codetools", "RSQLite", "cachem", "crayon", "debugme", "fastmap", "memoise", "pat-s/cranlike@s3", "pat-s/desc@description-from-remote"))'
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COPY . .
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# remove secrets from COPY
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RUN rm /.Renviron /.envrc
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RUN R CMD INSTALL . && rm -rf r-pkg-binaries
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CMD ["/bin/bash"]
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@ -1,7 +1,8 @@
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FROM redhat/ubi8
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ARG R_VERSION=4.4.1
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ARG RED_HAT_DEV_PW
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ENV PATH=/opt/R/4.4.1/bin:$PATH
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ENV PATH=/opt/R/${R_VERSION}/bin:$PATH
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ENV TZ="Europe/Berlin"
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ENV ARCH=arm64
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@ -24,8 +25,8 @@ RUN dnf install -y -q make lapack-devel git gcc gcc-c++ fontconfig-devel fribidi
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RUN curl -q -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure --enable-silent-rules && make 2>&1 >/dev/null && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
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### INSTALL R
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RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/el8/R-4.4.1-1-1.aarch64.rpm
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RUN dnf install -q -y R-4.4.1-1-1.aarch64.rpm
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RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/el8/R-${R_VERSION}-1-1.aarch64.rpm
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RUN dnf install -q -y R-${R_VERSION}-1-1.aarch64.rpm
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RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
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# Makevars
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@ -40,6 +41,8 @@ RUN bash -c 'echo -e "PKG_SYSREQS = TRUE\nPKG_SYSREQS_VERBOSE = TRUE" > /root/.R
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RUN R -q -e 'pak::pak(c("DBI", "R6", "RPostgres", "Rcpp", "askpass", "base64enc", "bit64", "bit", "blob", "callr", "cli", "credentials", "curl", "data.table", "digest", "dplyr", "fansi", "fs", "future.apply", "future", "generics", "gert", "globals", "glue", "hms", "httr", "jsonlite", "lgr", "lifecycle", "listenv", "lubridate", "magrittr", "mime", "openssl", "parallelly", "paws.common", "paws.storage", "pillar", "pkgbuild", "pkgconfig", "processx", "progressr", "ps", "purrr", "rlang", "rstudioapi","s3fs", "stringi", "stringr", "sys", "tibble", "tidyselect", "timechange", "utf8", "vctrs", "withr", "xml2", "zip", "codetools", "RSQLite", "cachem", "crayon", "debugme", "fastmap", "memoise", "pat-s/cranlike@s3", "pat-s/desc@description-from-remote"))'
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COPY . .
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# remove secrets from COPY
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RUN rm /.Renviron /.envrc
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RUN R CMD INSTALL . && rm -rf r-pkg-binaries
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CMD ["/bin/bash"]
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@ -1,7 +1,8 @@
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FROM redhat/ubi9
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ARG R_VERSION=4.4.1
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ARG RED_HAT_DEV_PW
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ENV PATH=/opt/R/4.4.1/bin:$PATH
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ENV PATH=/opt/R/${R_VERSION}/bin:$PATH
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ENV TZ="Europe/Berlin"
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ENV ARCH=arm64
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@ -24,8 +25,8 @@ RUN dnf install -y -q make lapack-devel git gcc gcc-c++ fontconfig-devel fribidi
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RUN curl -q -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure --enable-silent-rules && make 2>&1 >/dev/null && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
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### INSTALL R
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RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/el9/R-4.4.1-1-1.aarch64.rpm
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RUN dnf install -q -y R-4.4.1-1-1.aarch64.rpm
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RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/el9/R-${R_VERSION}-1-1.aarch64.rpm
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RUN dnf install -q -y R-${R_VERSION}-1-1.aarch64.rpm
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RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
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# Makevars
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@ -40,6 +41,8 @@ RUN bash -c 'echo -e "PKG_SYSREQS = TRUE\nPKG_SYSREQS_VERBOSE = TRUE" > /root/.R
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RUN R -q -e 'pak::pak(c("DBI", "R6", "RPostgres", "Rcpp", "askpass", "base64enc", "bit64", "bit", "blob", "callr", "cli", "credentials", "curl", "data.table", "digest", "dplyr", "fansi", "fs", "future.apply", "future", "generics", "gert", "globals", "glue", "hms", "httr", "jsonlite", "lgr", "lifecycle", "listenv", "lubridate", "magrittr", "mime", "openssl", "parallelly", "paws.common", "paws.storage", "pillar", "pkgbuild", "pkgconfig", "processx", "progressr", "ps", "purrr", "rlang", "rstudioapi","s3fs", "stringi", "stringr", "sys", "tibble", "tidyselect", "timechange", "utf8", "vctrs", "withr", "xml2", "zip", "codetools", "RSQLite", "cachem", "crayon", "debugme", "fastmap", "memoise", "pat-s/cranlike@s3", "pat-s/desc@description-from-remote"))'
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COPY . .
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# remove secrets from COPY
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RUN rm /.Renviron /.envrc
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RUN R CMD INSTALL . && rm -rf r-pkg-binaries
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CMD ["/bin/bash"]
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@ -1,6 +1,7 @@
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FROM ubuntu:jammy
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ENV PATH=/opt/R/4.4.1/bin:$PATH
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ARG R_VERSION=4.4.1
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ENV PATH=/opt/R/${R_VERSION}/bin:$PATH
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ENV TZ="Europe/Berlin"
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ENV DEBIAN_FRONTEND=noninteractive
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@ -22,8 +23,8 @@ RUN apt update && apt install -y --no-install-recommends gdebi-core g++ gfortran
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RUN curl -q -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure --enable-silent-rules && make 2>&1 >/dev/null && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
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### INSTALL R
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RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/2204/r-4.4.1_1_arm64.deb
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RUN gdebi -n -qq r-4.4.1_1_arm64.deb && rm r-4.4.1_1_arm64.deb
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RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/2204/r-${R_VERSION}_1_arm64.deb
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RUN gdebi -n -qq r-${R_VERSION}_1_arm64.deb && rm r-${R_VERSION}_1_arm64.deb
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RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
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# Makevars
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@ -38,6 +39,8 @@ RUN bash -c 'echo -e "PKG_SYSREQS = TRUE\nPKG_SYSREQS_VERBOSE = TRUE" > /root/.R
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RUN R -q -e 'pak::pak(c("DBI", "R6", "RPostgres", "Rcpp", "askpass", "base64enc", "bit64", "bit", "blob", "callr", "cli", "credentials", "curl", "data.table", "digest", "dplyr", "fansi", "fs", "future.apply", "future", "generics", "gert", "globals", "glue", "hms", "httr", "jsonlite", "lgr", "lifecycle", "listenv", "lubridate", "magrittr", "mime", "openssl", "parallelly", "paws.common", "paws.storage", "pillar", "pkgbuild", "pkgconfig", "processx", "progressr", "ps", "purrr", "rlang", "rstudioapi","s3fs", "stringi", "stringr", "sys", "tibble", "tidyselect", "timechange", "utf8", "vctrs", "withr", "xml2", "zip", "codetools", "RSQLite", "cachem", "crayon", "debugme", "fastmap", "memoise", "pat-s/cranlike@s3", "pat-s/desc@description-from-remote"))'
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COPY . .
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# remove secrets from COPY
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RUN rm /.Renviron /.envrc
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RUN R CMD INSTALL . && rm -rf r-pkg-binaries
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CMD ["/bin/bash"]
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@ -1,6 +1,7 @@
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FROM ubuntu:noble
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ENV PATH=/opt/R/4.4.1/bin:$PATH
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ARG R_VERSION=4.4.1
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ENV PATH=/opt/R/${R_VERSION}/bin:$PATH
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ENV TZ="Europe/Berlin"
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ENV DEBIAN_FRONTEND=noninteractive
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@ -22,8 +23,8 @@ RUN apt update && apt install -y --no-install-recommends gdebi-core g++ gfortran
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RUN curl -q -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure --enable-silent-rules && make 2>&1 >/dev/null && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
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### INSTALL R
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RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/2404/r-4.4.1_1_arm64.deb
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RUN gdebi -n -qq r-4.4.1_1_arm64.deb && rm r-4.4.1_1_arm64.deb
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RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/2404/r-${R_VERSION}_1_arm64.deb
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RUN gdebi -n -qq r-${R_VERSION}_1_arm64.deb && rm r-${R_VERSION}_1_arm64.deb
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RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
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# Makevars
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@ -38,6 +39,8 @@ RUN bash -c 'echo -e "PKG_SYSREQS = TRUE\nPKG_SYSREQS_VERBOSE = TRUE" > /root/.R
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RUN R -q -e 'pak::pak(c("DBI", "R6", "RPostgres", "Rcpp", "askpass", "base64enc", "bit64", "bit", "blob", "callr", "cli", "credentials", "curl", "data.table", "digest", "dplyr", "fansi", "fs", "future.apply", "future", "generics", "gert", "globals", "glue", "hms", "httr", "jsonlite", "lgr", "lifecycle", "listenv", "lubridate", "magrittr", "mime", "openssl", "parallelly", "paws.common", "paws.storage", "pillar", "pkgbuild", "pkgconfig", "processx", "progressr", "ps", "purrr", "rlang", "rstudioapi","s3fs", "stringi", "stringr", "sys", "tibble", "tidyselect", "timechange", "utf8", "vctrs", "withr", "xml2", "zip", "codetools", "RSQLite", "cachem", "crayon", "debugme", "fastmap", "memoise", "pat-s/cranlike@s3", "pat-s/desc@description-from-remote"))'
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COPY . .
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# remove secrets from COPY
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RUN rm /.Renviron /.envrc
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RUN R CMD INSTALL . && rm -rf r-pkg-binaries
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CMD ["/bin/bash"]
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