fix image names, quote argument
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6 changed files with 22 additions and 3 deletions
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@ -42,7 +42,7 @@ steps:
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# more complicated system dependencies which pak cannot resolve
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point
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- R -q -e 'options(crayon.enabled = TRUE, Ncpus = 6, future.globals.onReference = "error", repos = structure(c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"))); pkgs = tools::CRAN_package_db()[[1]][${BLOCK}]; library(rBinaries); future::plan("multisession", workers = 6, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE, platform = ${PLATFORM}))'
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- R -q -e 'options(crayon.enabled = TRUE, Ncpus = 6, future.globals.onReference = "error", repos = structure(c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"))); pkgs = tools::CRAN_package_db()[[1]][${BLOCK}]; library(rBinaries); future::plan("multisession", workers = 6, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE, platform = "${PLATFORM}"))'
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backend_options:
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kubernetes:
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### PROD
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2
Justfile
2
Justfile
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@ -1,5 +1,5 @@
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image OS:
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if echo "{{OS}}" | grep -qi "rhel"; then \
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if echo "{{OS}}" | grep -qi "redhat"; then \
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docker buildx build --build-arg RED_HAT_DEV_PW='ujF@4A^yn$6utRhb&UooGH#w' -f docker/Dockerfile-{{OS}} -t pats22/arm-binaries-r-{{OS}}:latest --push .; \
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else \
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docker buildx build -f docker/Dockerfile-{{OS}} -t pats22/arm-binaries-r-{{OS}}:latest --push .; \
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21
docker/Dockerfile-redhat-8
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21
docker/Dockerfile-redhat-8
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@ -0,0 +1,21 @@
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FROM redhat/ubi8:8.10-1020
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ARG RED_HAT_DEV_PW
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ENV PATH=/opt/R/4.4.1/bin:$PATH
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ENV TZ="Europe/Berlin"
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RUN subscription-manager register --username mail@devxy.io --password "$RED_HAT_DEV_PW" && subscription-manager repos --enable codeready-builder-for-rhel-8-aarch64-rpms
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### install JAGS (needed for runjags which itself is again a dependency of many packages)
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RUN dnf install -y -q make lapack-devel git gcc gcc-c++ fontconfig-devel fribidi-devel libjpeg-turbo-devel libtiff-devel postgresql-devel
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RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
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RUN dnf install -y -q https://dl.fedoraproject.org/pub/epel/8/Everything/aarch64/Packages/h/hiredis-0.13.3-13.el8.aarch64.rpm && dnf install -y -q https://dl.fedoraproject.org/pub/epel/8/Everything/aarch64/Packages/c/ccache-3.7.7-1.el8.aarch64.rpm
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RUN curl -O https://f003.backblazeb2.com/file/devxy-r-builds/el8/R-4.4.1-1-1.aarch64.rpm
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RUN dnf install -q -y R-4.4.1-1-1.aarch64.rpm
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RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
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COPY . .
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RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE, PKG_SYSREQS_PLATFORM = "redhat-8"); pak::pak()'
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RUN R CMD INSTALL .
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RUN rm -rf arm-binaries-r
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CMD ["/bin/bash"]
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21
docker/Dockerfile-redhat-9
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21
docker/Dockerfile-redhat-9
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@ -0,0 +1,21 @@
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FROM redhat/ubi9:9.4-1181
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ARG RED_HAT_DEV_PW
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ENV PATH=/opt/R/4.4.1/bin:$PATH
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ENV TZ="Europe/Berlin"
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RUN subscription-manager register --username mail@devxy.io --password "$RED_HAT_DEV_PW" && subscription-manager repos --enable codeready-builder-for-rhel-9-aarch64-rpms
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### install JAGS (needed for runjags which itself is again a dependency of many packages)
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RUN dnf install -y -q lapack-devel git gcc g++ fontconfig-devel fribidi-devel libjpeg-turbo-devel libtiff-devel
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RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
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RUN dnf install -y -q https://dl.fedoraproject.org/pub/epel/9/Everything/aarch64/Packages/h/hiredis-1.0.2-2.el9.aarch64.rpm && dnf install -y -q https://dl.fedoraproject.org/pub/epel/9/Everything/aarch64/Packages/c/ccache-4.5.1-2.el9.aarch64.rpm
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RUN curl -O https://f003.backblazeb2.com/file/devxy-r-builds/el9/R-4.4.1-1-1.aarch64.rpm
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RUN dnf install -q -y R-4.4.1-1-1.aarch64.rpm
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RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
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COPY . .
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RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE, PKG_SYSREQS_PLATFORM = "redhat-9"); pak::pak()'
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RUN R CMD INSTALL .
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RUN rm -rf arm-binaries-r
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CMD ["/bin/bash"]
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19
docker/Dockerfile-ubuntu-2204
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19
docker/Dockerfile-ubuntu-2204
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@ -0,0 +1,19 @@
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FROM ubuntu:jammy-20240530
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ENV PATH=/opt/R/4.4.1/bin:$PATH
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ENV TZ="Europe/Berlin"
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### install JAGS (needed for runjags which itself is again a dependency of many packages)
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RUN apt update && apt install -y --no-install-recommends gdebi-core g++ gfortran libbz2-dev libblas-dev libicu-dev liblapack-dev liblzma-dev libpaper-utils libpcre2-dev libtcl8.6 libtk8.6 libxt6 unzip zip zlib1g-dev libpcre3-dev libopenblas-dev curl ca-certificates make ccache
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RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
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RUN curl -O https://f003.backblazeb2.com/file/devxy-r-builds/2204/r-4.4.1_1_arm64.deb
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RUN gdebi -n -qq r-4.4.1_1_arm64.deb && rm r-4.4.1_1_arm64.deb
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RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
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COPY . .
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RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE, PKG_SYSREQS_PLATFORM = "ubuntu-24.04"); pak::pak()'
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RUN R CMD INSTALL .
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RUN rm -rf arm-binaries-r
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CMD ["/bin/bash"]
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@ -4,7 +4,7 @@ ENV PATH=/opt/R/4.4.1/bin:$PATH
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ENV TZ="Europe/Berlin"
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### install JAGS (needed for runjags which itself is again a dependency of many packages)
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RUN apt update && apt install -y --no-install-recommends gdebi-core g++ gfortran libbz2-dev libblas-dev libicu-dev liblapack-dev liblzma-dev libpaper-utils libpcre2-dev libtcl8.6 libtk8.6 libxt6 unzip zip zlib1g-dev libpcre3-dev libopenblas-dev curl ca-certificates make
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RUN apt update && apt install -y --no-install-recommends gdebi-core g++ gfortran libbz2-dev libblas-dev libicu-dev liblapack-dev liblzma-dev libpaper-utils libpcre2-dev libtcl8.6 libtk8.6 libxt6 unzip zip zlib1g-dev libpcre3-dev libopenblas-dev curl ca-certificates make ccache
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RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
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RUN curl -O https://f003.backblazeb2.com/file/devxy-r-builds/2404/r-4.4.1_1_arm64.deb
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