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install pak binary again

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This commit is contained in:
Patrick Schratz 2024-09-30 11:30:57 +02:00
commit 74005f4067
Signed by: pat-s
GPG key ID: 3C6318841EF78925
1 changed files with 4 additions and 6 deletions
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5
docker/Dockerfile-redhat-8
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@ -32,8 +32,7 @@ RUN dnf install -y chromium
### INSTALL R
RUN curl -O "https://devxy-r-builds.s3.eu-central-2.amazonaws.com/el8/R-${R_VERSION}-1-1.$(arch).rpm"
RUN dnf install -q -y "R-${R_VERSION}-1-1.$(arch).rpm" && rm "R-${R_VERSION}-1-1.$(arch).rpm"
# we can't install pak on rhel as the bundled curl has the wrong CURL_CA_BUNDLE set (as it is only built on Ubuntu)
RUN R -q -e 'install.packages("remotes", repos = "cloud.r-project.org"); remotes::install_github("r-lib/pak")'
RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
### Makevars
# dbarts: CFLAGS += -flax-vector-conversions (https://github.com/vdorie/dbarts/issues/66)
@ -41,7 +40,7 @@ RUN R -q -e 'install.packages("remotes", repos = "cloud.r-project.org"); remotes
RUN mkdir -p /root/.R && bash -c 'echo -e "CXX_STD = CXX14\nCFLAGS += -flax-vector-conversions\nCC=ccache gcc\nCPP=gcc -E\nCXXCPP=gcc -e\nCXX=ccache g++\nCXX11=ccache g++\nCXX14=ccache g++\nCXX17=ccache g++\nF77=gfortran\nFC=gfortran" >> /root/.R/Makevars'
# R repos
RUN bash -c 'echo -e "options(crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL, repos = structure(c(CRAN = \"https://cloud.r-project.org\", INLA = \"https://inla.r-inla-download.org/R/stable\")))" > /root/.Rprofile'
RUN bash -c 'echo -e "options(encoding = "UTF-8", crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL, repos = structure(c(CRAN = \"https://cloud.r-project.org\", INLA = \"https://inla.r-inla-download.org/R/stable\")))" > /root/.Rprofile'
RUN bash -c 'echo -e "PKG_SYSREQS = TRUE\nPKG_SYSREQS_VERBOSE = TRUE" > /root/.Renviron'
# FIXME: switch to pak after https://github.com/r-lib/pak/issues/628