add error to metadata table

This commit is contained in:
Patrick Schratz 2024-07-25 00:04:28 +02:00
commit 687b2cea36
Signed by: pat-s
GPG key ID: 3C6318841EF78925
4 changed files with 6 additions and 185 deletions

View file

@ -4,6 +4,7 @@ export(build_binary_package)
export(build_single_tag) export(build_single_tag)
export(dbcon) export(dbcon)
export(install_package_system_dependencies) export(install_package_system_dependencies)
export(list_metadata_tables)
export(set_bin_path) export(set_bin_path)
export(set_codename) export(set_codename)
export(upload_single_binary_to_s3) export(upload_single_binary_to_s3)
@ -17,13 +18,11 @@ importFrom(DBI,dbWriteTable)
importFrom(RPostgres,Postgres) importFrom(RPostgres,Postgres)
importFrom(cli,cli_alert) importFrom(cli,cli_alert)
importFrom(cranlike,add_PACKAGES) importFrom(cranlike,add_PACKAGES)
importFrom(dplyr,all_vars)
importFrom(dplyr,filter) importFrom(dplyr,filter)
importFrom(dplyr,filter_at)
importFrom(dplyr,group_by) importFrom(dplyr,group_by)
importFrom(dplyr,n) importFrom(dplyr,n)
importFrom(dplyr,summarise) importFrom(dplyr,summarise)
importFrom(dplyr,vars) importFrom(dplyr,tbl)
importFrom(future,plan) importFrom(future,plan)
importFrom(future.apply,future_mapply) importFrom(future.apply,future_mapply)
importFrom(gert,git_config_set) importFrom(gert,git_config_set)

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@ -1,179 +0,0 @@
#' @importFrom DBI dbConnect dbDisconnect dbWriteTable dbGetQuery dbExecute
store_build_metadata <- function(
package_name, tag, platform,
error_occurred, error, force = FALSE) {
# s3 <- paws.storage::s3(config = list(
# endpoint = "https://s3.eu-central-003.backblazeb2.com",
# region = "eu-central-003"
# ))
# db_local <- s3$get_object(Bucket = "devxy-arm64-r-binaries-db", Key = "metadata.sqlite")
# writeBin(db_local$Body, "/tmp/metadata.sqlite")
# Create a new SQLite connection
con <- DBI::dbConnect(RPostgres::Postgres(),
dbname = "build_metadata", host = "postgres-arm-binaries-r.devxy.io",
port = 15432, user = "arm_binaries", password = Sys.getenv("PGPASS")
)
# Create an index on the package_name and tag columns
dbExecute(con, "CREATE INDEX IF NOT EXISTS idx_metadata_package_tag ON single_builds(package_name, platform)")
# Check if an entry with the same package_name and tag already exists
existing_entries <- dbGetQuery(con, paste0(
"SELECT * FROM single_builds WHERE package_name = '",
package_name, "' AND tag = '", tag, "'"
))
if (nrow(existing_entries) >= 1 && !force) {
cli::cli_alert("{.fun store_build_metadata}: Build metadata for {.field {.pkg package_name}} {.field {tag}} already exists.")
} else if (nrow(existing_entries) >= 1 && force) {
cli::cli_alert_info("{.fun store_build_metadata}: Force overwriting build metadata for {.pkg {package_name}} {.field {tag}} because {.code force = TRUE} was set.")
dbExecute(con, sprintf("UPDATE single_builds SET build_timestamp = '%s' WHERE package_name = '%s' and tag = '%s'", format(Sys.time(), "%Y-%m-%d %H:%M:%S"), package_name, tag))
} else if (nrow(existing_entries) == 0) {
cli::cli_alert("{.fun store_build_metadata}: Storing build metadata for {.pkg {package_name}} {.field {tag}}.")
# Create a data frame with the metadata
metadata <- data.frame(
package_name = package_name,
tag = tag,
platform = platform,
error_occurred = error_occurred,
build_timestamp = format(Sys.time(), "%Y-%m-%d %H:%M:%S"),
build_duration = NA
)
# Write the data frame to the SQLite database
dbWriteTable(con, "single_builds", metadata, append = TRUE)
}
# Close the SQLite connection
dbDisconnect(con)
return(invisible(TRUE))
}
#' @importFrom DBI dbConnect dbGetQuery
#' @importFrom dplyr filter_at vars all_vars
query_build_metadata <- function(table = "single_builds", ...) {
# s3 <- paws.storage::s3(config = list(
# endpoint = "https://s3.eu-central-003.backblazeb2.com",
# region = "eu-central-003"
# ))
# db_local <- s3$get_object(Bucket = "devxy-arm64-r-binaries-db", Key = "metadata.sqlite")
# writeBin(db_local$Body, "/tmp/metadata.sqlite")
con <- dbcon_mem()
# Read the entire table
metadata <- dbGetQuery(con, sprintf("SELECT * FROM %s", table))
# Close the SQLite connection
dbDisconnect(con)
# Filter the data frame based on the given parameters
filter_conditions <- list(...)
# Remove NULL elements from the list
filter_conditions <- filter_conditions[!sapply(filter_conditions, is.null)]
# Apply the filter conditions if any exist
if (length(filter_conditions) > 0) {
metadata <- dplyr::filter_at(
metadata, dplyr::vars(names(filter_conditions)),
dplyr::all_vars(. == filter_conditions[[.]])
)
}
return(metadata)
}
#' @importFrom DBI dbConnect dbDisconnect dbWriteTable dbGetQuery dbExecute dbListTables
#' @importFrom dplyr group_by summarise filter n
build_metadata_summary <- function(package_name, platform) {
con <- dbcon_mem()
metadata <- dbGetQuery(con, sprintf(
"SELECT * FROM single_builds WHERE package_name = '%s' AND platform = '%s'", package_name, platform
))
cli::cli_alert("{.fun build_binary_package}: Building/updating metadata summary for {.pkg {package_name[[1]]}}.")
# add average_build_time_per_tag to metadata summary table
# If the entry does not exist or is not valid, entry will be NULL or NA
# entry_exists <- !is.null(entry$average_build_time_per_tag) && !is.na(entry$average_build_time_per_tag)
# If the entry does not exist, update the average_build_time_per_tag
# if (!entry_exists) {
# dbExecute(con, paste0(
# "UPDATE metadata_summary SET average_build_time_per_tag = ", average_build_time_per_tag,
# " WHERE package_name = '", package_name[[1]], "' AND platform = '", platform, "'"
# ))
# }
# Calculate the summary
summary <- metadata %>%
group_by(package_name, platform) %>%
summarise(
successful_builds = sum(!error_occurred),
unsuccessful_builds = sum(error_occurred),
total_builds = n(),
percentage_successful_builds = round(successful_builds / total_builds * 100, 2),
average_build_time_per_tag = round(sum(as.numeric(build_duration)) / total_builds, 2)
)
# Check if the metadata_summary table exists
if ("metadata_summary" %in% dbListTables(con)) {
dbExecute(con, paste0(
"UPDATE metadata_summary SET successful_builds = ", summary$successful_builds,
", unsuccessful_builds = ", summary$unsuccessful_builds,
", total_builds = ", summary$total_builds,
", percentage_successful_builds = ", summary$percentage_successful_builds,
", average_build_time_per_tag = '", summary$average_build_time_per_tag,
"', package_name = '", package_name,
"', platform = '", platform, "'"
))
} else {
dbWriteTable(con, "metadata_summary", summary)
}
# Close the SQLite connection
dbDisconnect(con)
# s3 <- paws.storage::s3(config = list(
# endpoint = "https://s3.eu-central-003.backblazeb2.com",
# region = "eu-central-003"
# ))
# invisible(s3$put_object(
# Bucket = "devxy-arm64-r-binaries-db", Key = "metadata.sqlite",
# Body = "/tmp/metadata.sqlite"
# ))
}
query_metadata_summary <- function(package_name = NULL, platform = NULL) {
# s3 <- paws.storage::s3(config = list(
# endpoint = "https://s3.eu-central-003.backblazeb2.com",
# region = "eu-central-003"
# ))
# db_local <- s3$get_object(Bucket = "devxy-arm64-r-binaries-db", Key = "metadata.sqlite")
# writeBin(db_local$Body, "/tmp/metadata.sqlite")
# Create a new SQLite connection
con <- dbcon_mem()
# If both package_name and platform are NULL, return the full table
if (is.null(package_name) && is.null(platform)) {
summary <- dbGetQuery(con, "SELECT * FROM metadata_summary")
} else {
# Query the metadata_summary table for the specified package and platform
summary <- dbGetQuery(con, paste0(
"SELECT * FROM metadata_summary WHERE package_name = '",
package_name, "' AND platform = '", platform, "'"
))
}
# Close the SQLite connection
dbDisconnect(con)
return(summary)
}

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@ -107,7 +107,7 @@ build_binary_package <- function(package_name, tag = NULL, codename = NULL,
local_clone_dir_single <- sprintf("%s/%s_%s", local_clone_dir, x, y) local_clone_dir_single <- sprintf("%s/%s_%s", local_clone_dir, x, y)
unlink(local_clone_dir_single, force = TRUE, recursive = TRUE) unlink(local_clone_dir_single, force = TRUE, recursive = TRUE)
# NB: this does not always work, which is why we are using the lack of build_duration as a secondary factor in store_metadata() # NB: this does not always work, which is why we are using the lack of build_duration as a secondary factor in store_metadata()
store_build_metadata(x, y, platform, error_occurred = TRUE, force = TRUE) store_build_metadata(x, y, platform, error_occurred = TRUE, force = TRUE, error = e)
} }
) )
}, package_name, tag, future.seed = TRUE) }, package_name, tag, future.seed = TRUE)

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@ -1,7 +1,7 @@
#' @importFrom DBI dbConnect dbDisconnect dbWriteTable dbGetQuery dbExecute #' @importFrom DBI dbConnect dbDisconnect dbWriteTable dbGetQuery dbExecute
store_build_metadata <- function( store_build_metadata <- function(
package_name, tag, platform, package_name, tag, platform,
error_occurred, error, force = FALSE) { error_occurred, error, force = FALSE, error = NULL) {
con <- DBI::dbConnect(RPostgres::Postgres(), con <- DBI::dbConnect(RPostgres::Postgres(),
dbname = "build_metadata", host = "postgres-arm-binaries-r.devxy.io", dbname = "build_metadata", host = "postgres-arm-binaries-r.devxy.io",
port = 15432, user = "arm_binaries", password = Sys.getenv("PGPASS") port = 15432, user = "arm_binaries", password = Sys.getenv("PGPASS")
@ -18,7 +18,7 @@ store_build_metadata <- function(
} else if (nrow(existing_entries) >= 1 && force) { } else if (nrow(existing_entries) >= 1 && force) {
cli::cli_alert_info("{.fun store_build_metadata}: Force overwriting build metadata for {.pkg {package_name}} {.field {tag}} because {.code force = TRUE} was set.") cli::cli_alert_info("{.fun store_build_metadata}: Force overwriting build metadata for {.pkg {package_name}} {.field {tag}} because {.code force = TRUE} was set.")
dbExecute(con, sprintf("UPDATE single_builds SET build_timestamp = '%s', error_occurred = %s WHERE package_name = '%s' and tag = '%s'", format(Sys.time(), "%Y-%m-%d %H:%M:%S"), error_occurred, package_name, tag)) dbExecute(con, sprintf("UPDATE single_builds SET build_timestamp = '%s', error_occurred = %s, error = '%s' WHERE package_name = '%s' and tag = '%s'", format(Sys.time(), "%Y-%m-%d %H:%M:%S"), error_occurred, error, package_name, tag))
} else if (nrow(existing_entries) == 0) { } else if (nrow(existing_entries) == 0) {
cli::cli_alert("{.fun store_build_metadata}: Storing build metadata for {.pkg {package_name}} {.field {tag}}.") cli::cli_alert("{.fun store_build_metadata}: Storing build metadata for {.pkg {package_name}} {.field {tag}}.")
# Create a data frame with the metadata # Create a data frame with the metadata
@ -27,6 +27,7 @@ store_build_metadata <- function(
tag = tag, tag = tag,
platform = platform, platform = platform,
error_occurred = error_occurred, error_occurred = error_occurred,
error = error,
build_timestamp = format(Sys.time(), "%Y-%m-%d %H:%M:%S"), build_timestamp = format(Sys.time(), "%Y-%m-%d %H:%M:%S"),
build_duration = NA build_duration = NA
) )