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add dockerfile and justfile

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This commit is contained in:
Patrick Schratz 2024-07-30 16:12:31 +02:00
commit 65cd8ba3ca
Signed by: pat-s
GPG key ID: 3C6318841EF78925
5 changed files with 46 additions and 18 deletions
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9
Justfile
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build_rhel8_image:
docker buildx build -f docker/Dockerfile.rhel8 --build-arg RED_HAT_DEV_PW=$RED_HAT_DEV_PW -t devxy/rhel8_rpkg_
binaries:latest --load .
image OS:
if echo "{{OS}}" | grep -qi "rhel"; then \
docker buildx build --build-arg RED_HAT_DEV_PW='ujF@4A^yn$6utRhb&UooGH#w' -f docker/Dockerfile-{{OS}} -t pats22/arm-binaries-r-{{OS}}:latest --push .; \
else \
docker buildx build -f docker/Dockerfile-{{OS}} -t pats22/arm-binaries-r-{{OS}}:latest --push .; \
fi

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docker/Dockerfile-rhel8 Normal file
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FROM redhat/ubi8:8.10-1020
ARG RED_HAT_DEV_PW
ENV PATH=/opt/R/4.4.1/bin:$PATH
ENV TZ="Europe/Berlin"
RUN subscription-manager register --username mail@devxy.io --password "$RED_HAT_DEV_PW" && subscription-manager repos --enable codeready-builder-for-rhel-8-aarch64-rpms
### install JAGS (needed for runjags which itself is again a dependency of many packages)
RUN dnf install -y -q make lapack-devel git gcc gcc-c++ fontconfig-devel fribidi-devel libjpeg-turbo-devel libtiff-devel
RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
RUN dnf install -y -q https://dl.fedoraproject.org/pub/epel/8/Everything/aarch64/Packages/h/hiredis-0.13.3-13.el8.aarch64.rpm && dnf install -y -q https://dl.fedoraproject.org/pub/epel/8/Everything/aarch64/Packages/c/ccache-3.7.7-1.el8.aarch64.rpm
RUN curl -O https://f003.backblazeb2.com/file/devxy-r-builds/el8/R-4.4.1-1-1.aarch64.rpm
RUN dnf install -q -y R-4.4.1-1-1.aarch64.rpm
RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
COPY . .
RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE, PKG_SYSREQS_PLATFORM = "redhat-8"); pak::pak()'
RUN R CMD INSTALL .
RUN rm -rf arm-binaries-r
CMD ["/bin/bash"]

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docker/Dockerfile-rhel9 Normal file
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FROM redhat/ubi9:9.4-1181
ARG RED_HAT_DEV_PW
ENV PATH=/opt/R/4.4.1/bin:$PATH
ENV TZ="Europe/Berlin"
RUN subscription-manager register --username mail@devxy.io --password "$RED_HAT_DEV_PW" && subscription-manager repos --enable codeready-builder-for-rhel-9-aarch64-rpms
### install JAGS (needed for runjags which itself is again a dependency of many packages)
RUN dnf install -y -q lapack-devel git gcc g++ fontconfig-devel fribidi-devel libjpeg-turbo-devel libtiff-devel
RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
RUN dnf install -y -q https://dl.fedoraproject.org/pub/epel/9/Everything/aarch64/Packages/h/hiredis-1.0.2-2.el9.aarch64.rpm && dnf install -y -q https://dl.fedoraproject.org/pub/epel/9/Everything/aarch64/Packages/c/ccache-4.5.1-2.el9.aarch64.rpm
RUN curl -O https://f003.backblazeb2.com/file/devxy-r-builds/el9/R-4.4.1-1-1.aarch64.rpm
RUN dnf install -q -y R-4.4.1-1-1.aarch64.rpm
RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
COPY . .
RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE, PKG_SYSREQS_PLATFORM = "redhat-9"); pak::pak()'
RUN R CMD INSTALL .
RUN rm -rf arm-binaries-r
CMD ["/bin/bash"]

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docker/Dockerfile-ubuntu-2404 Normal file
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FROM ubuntu:noble-20240605
ENV PATH=/opt/R/4.4.1/bin:$PATH
ENV TZ="Europe/Berlin"
### install JAGS (needed for runjags which itself is again a dependency of many packages)
RUN apt update && apt install -y --no-install-recommends gdebi-core g++ gfortran libbz2-dev libblas-dev libicu-dev liblapack-dev liblzma-dev libpaper-utils libpcre2-dev libtcl8.6 libtk8.6 libxt6 unzip zip zlib1g-dev libpcre3-dev libopenblas-dev curl ca-certificates make
RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
RUN curl -O https://f003.backblazeb2.com/file/devxy-r-builds/2404/r-4.4.1_1_arm64.deb
RUN gdebi -n -qq r-4.4.1_1_arm64.deb && rm r-4.4.1_1_arm64.deb
RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
COPY . .
RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE, PKG_SYSREQS_PLATFORM = "ubuntu-24.04"); pak::pak()'
RUN R CMD INSTALL .
RUN rm -rf arm-binaries-r
CMD ["/bin/bash"]

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docker/Dockerfile.rhel8
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FROM redhat/ubi8
ARG R_VERSION=4.0.5
ARG RED_HAT_DEV_PW
RUN subscription-manager register --username pat-s --password $RED_HAT_DEV_PW && subscription-manager repos --enable codeready-builder-for-rhel-8-$(arch)-rpms && dnf update
RUN dnf -y install --nodocs git rsync
RUN echo "R Version: ${R_VERSION}" && echo "Downloading R-${R_VERSION}.rpm from S3..." && curl -o /tmp/R-${R_VERSION}.rpm https://cynkra-r-builds-arm64.s3.eu-central-1.amazonaws.com/el8/R-"${R_VERSION}"-1-1."$(arch)".rpm && dnf install --nodocs -y /tmp/R-${R_VERSION}.rpm && rm -rf /tmp/R-${R_VERSION}.rpm
ENV PATH=/opt/R/${R_VERSION}/bin:$PATH
ENV R_PROGRESSR_ENABLE=TRUE
CMD ["R"]