build missing pkgs

.woodpecker/build-ubuntu-2204-arm64.yaml

@@ -9,29 +9,29 @@ when:
 skip_clone: true
 
 steps:
-  - name: 'Warming up'
-    image: busybox:latest
-    failure: ignore
-    commands:
-      - sleep 300
-      - echo "Warmed Up"
-    backend_options:
-      kubernetes:
-        resources:
-          requests:
-            memory: 14Gi
-            cpu: 3000m
-          limits:
-            memory: 14Gi
-            cpu: 3000m
-        nodeSelector:
-          kubernetes.io/arch: arm64
-          node.kubernetes.io/instance-type: cax31
-        tolerations:
-          - key: 'CI'
-            operator: 'Equal'
-            value: 'true'
-            effect: 'NoSchedule'
+  # - name: 'Warming up'
+  #   image: busybox:latest
+  #   failure: ignore
+  #   commands:
+  #     - sleep 300
+  #     - echo "Warmed Up"
+  #   backend_options:
+  #     kubernetes:
+  #       resources:
+  #         requests:
+  #           memory: 14Gi
+  #           cpu: 3000m
+  #         limits:
+  #           memory: 14Gi
+  #           cpu: 3000m
+  #       nodeSelector:
+  #         kubernetes.io/arch: arm64
+  #         node.kubernetes.io/instance-type: cax31
+  #       tolerations:
+  #         - key: 'CI'
+  #           operator: 'Equal'
+  #           value: 'true'
+  #           effect: 'NoSchedule'
 
   - name: 'Build binaries'
     image: docker.io/devxygmbh/arm64-binaries-r-ubuntu-2204
@@ -73,7 +73,7 @@ steps:
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('autoslider.core', 'BiplotGUI', 'blatr', 'BRugs', 'clrng',  'DiscreteFWER', 'doMPI', 'excel.link', 'filters', 'gpuR', 'greta.censored',  'imbalanceDatRel', 'KeyboardSimulator', 'lgpr', 'LLIC', 'MDSGUI',  'MediaNews', 'PolisheR', 'R2PPT', 'R2wd', 'ravetools', 'Rcplex',  'RcppCWB', 'redatamx', 'rFUSION', 'rmarchingcubes', 'Rmpi', 'ROI.plugin.cplex',  'ROI.plugin.qpoases', 'ROracle', 'RWinEdt', 'spectrino', 'strata',  'survival.svb', 'SurvivalClusteringTree', 'survivalmodels', 'survivalREC',  'survivalROC', 'survPresmooth', 'survSNP', 'survstan', 'svd',  'svglite', 'svines', 'swatches', 'swdpwr', 'sweater', 'swephR',  'SymTS', 'taskscheduleR', 'testarguments'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2204'))"
+      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('aphylo', 'atime'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2204'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
       # RInno: Windows-only
@@ -108,14 +108,14 @@ steps:
       kubernetes:
         resources:
           requests:
-            memory: 14Gi
+            memory: 5Gi
             cpu: 3000m
           limits:
             memory: 14Gi
             cpu: 3000m
         nodeSelector:
           kubernetes.io/arch: arm64
-          node.kubernetes.io/instance-type: cax31
+          node.kubernetes.io/instance-type: cax41
         tolerations:
           - key: 'CI'
             operator: 'Equal'