build missing pkgs

2024-12-11 18:45:38 +01:00 · 2024-12-11 18:45:38 +01:00 · 5f63feffd8
commit 5f63feffd8
parent 577b7d9465
1 changed files with 163 additions and 157 deletions
--- a/.woodpecker/build-redhat-8-arm64.yaml
+++ b/.woodpecker/build-redhat-8-arm64.yaml
@ -9,29 +9,29 @@ when:
 skip_clone: true

 steps:
-  - name: 'Warming up'
-    image: busybox:latest
-    failure: ignore
-    commands:
-      - sleep 300
-      - echo "Warmed Up"
-    backend_options:
-      kubernetes:
-        resources:
-          requests:
-            memory: 14Gi
-            cpu: 3000m
-          limits:
-            memory: 14Gi
-            cpu: 3000m
-        nodeSelector:
-          kubernetes.io/arch: arm64
-          node.kubernetes.io/instance-type: cax31
-        tolerations:
-          - key: 'CI'
-            operator: 'Equal'
-            value: 'true'
-            effect: 'NoSchedule'
+  # - name: 'Warming up'
+  #   image: busybox:latest
+  #   failure: ignore
+  #   commands:
+  #     - sleep 300
+  #     - echo "Warmed Up"
+  #   backend_options:
+  #     kubernetes:
+  #       resources:
+  #         requests:
+  #           memory: 14Gi
+  #           cpu: 3000m
+  #         limits:
+  #           memory: 14Gi
+  #           cpu: 3000m
+  #       nodeSelector:
+  #         kubernetes.io/arch: arm64
+  #         node.kubernetes.io/instance-type: cax31
+  #       tolerations:
+  #         - key: 'CI'
+  #           operator: 'Equal'
+  #           value: 'true'
+  #           effect: 'NoSchedule'

  - name: 'Build binaries'
    image: docker.io/devxygmbh/arm64-binaries-r-redhat-8
@ -73,7 +73,7 @@ steps:
      - R -q -e 'packageVersion("bincraftR")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('sirus',  'sisireg', 'SIT', 'SITH', 'sitmo', 'sits', 'sjdbc', 'SK4FGA',  'SKAT', 'sketching', 'SKFCPD', 'sklarsomega', 'skm', 'skpr',  'slasso', 'SLBDD', 'slcm', 'sld', 'sleev', 'slfm', 'SLHD', 'slider',  'SLOPE', 'slp', 'smaa', 'smacof', 'smam', 'smfishHmrf', 'smfsb',  'smile', 'SMITIDvisu', 'SMMA', 'SMME', 'smmR', 'smoof', 'smooth',  'smoothAPC', 'SmoothHazard', 'smoothSurv', 'SMUT', 'smvgraph',  'sna', 'SnowballC', 'SNPknock', 'snplist', 'snpsettest', 'SNSeg',  'SobolSequence', 'socceR', 'social', 'sodium', 'SoftBart', 'softImpute',  'som', 'sorcering', 'SoundexBR', 'sourcetools', 'sp', 'spAbundance',  'spacefillr', 'SpaceTimeBSS', 'SpaCOAP', 'SpaDES.tools', 'spam',  'spam64', 'spaMM', 'sparcl', 'SparseChol', 'sparseDFM', 'sparsegl',  'sparseHessianFD', 'sparseinv', 'SparseLPM', 'sparseLTSEigen',  'SparseM', 'SPARSEMODr', 'sparsereg', 'sparseSEM', 'sparsesvd',  'sparseSVM', 'SparseTSCGM', 'sparsevb', 'sparsevctrs', 'sparsio',  'sparta', 'sparvaride', 'spass', 'spate', 'spatgraphs', 'spaths',  'spatial', 'SpatialBSS', 'SpatialEpi', 'SpatialExtremes', 'SpatialfdaR',  'SpatialGEV', 'spatialising', 'SpatialKDE', 'SpatialKWD', 'SpatialPack',  'spatialrisk', 'SpatialTools', 'spatialwarnings', 'spatialwidget',  'SpatMCA', 'SpaTopic', 'SpatPCA', 'spatstat.explore', 'spatstat.Knet',  'spatstat.random', 'spatstat.sparse', 'spbal', 'spBayes', 'spBayesSurv',  'spBFA', 'Spbsampling', 'spc', 'spcosa', 'spCP', 'spcr', 'spduration',  'speakeasyR', 'SPECIES', 'specklestar', 'specs', 'SpecsVerification',  'spectralGraphTopology', 'spectralR', 'spectre', 'spectrino',  'sped', 'speedytax', 'spfa', 'spFW', 'spGARCH', 'spgs', 'spgwr',  'sphereplot', 'sphunif', 'spiderbar', 'spikeslab', 'spikeSlabGAM',  'spinBayes', 'splancs', 'SPlit', 'SplitGLM', 'SplitReg', 'splmm',  'splusTimeDate', 'spMC', 'spNNGP', 'spOccupancy', 'sport', 'spray',  'spreadr', 'springer', 'sprintr', 'SPSP', 'spsurv', 'spTDyn',  'SpTe2M', 'spTimer', 'squat', 'srm', 'SRTsim', 'ssh', 'Sshaped',  'SSLR', 'ssMousetrack', 'SSN2', 'SSOSVM', 'sspse', 'stable',  'staggered', 'stan4bart', 'StanMoMo', 'STAREG', 'starma', 'starsExtra',  'STARTdesign', 'starvz', 'statcomp', 'StatDA', 'statgenIBD',  'statgenQTLxT', 'statip', 'STB', 'stcos', 'stcpR6', 'stdvectors',  'steepness', 'stelfi', 'stepPlr', 'stepR', 'steps', 'StepSignalMargiLike',  'stepSplitReg', 'StepwiseTest', 'stfit', 'stima', 'stlplus',  'StochBlock', 'stochQN', 'stockR', 'stocks', 'stopp', 'stops',  'stosim', 'stpm', 'stpp', 'stpphawkes', 'surveyvoi', 'symbolicDA',  'symbolicQspray', 'T4cluster', 'taskscheduleR', 'TDAkit', 'tessellation',  'TestGardener', 'thames', 'TML', 'Toothnroll', 'TPMplt', 'traineR',  'treats', 'trinROC', 'triptych', 'TSclust', 'TSCS', 'tsmarch',  'TUFLOWR', 'TukeyRegion', 'uavRmp', 'UBayFS', 'ucie', 'UCSCXenaShiny',  'UnalR', 'valhallr', 'valueSetCompare', 'vegan3d', 'vennplot',  'VICatMix', 'viewpoly', 'VIRF', 'vivid', 'voiceR', 'VOSONDash',  'vvdoctor', 'wallace', 'WaveletLSTM', 'WaverideR', 'WCluster',  'webglobe', 'x3ptools'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-8'))"
+      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('aphylo', 'atime'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-8'))"
      ### Manual pkg builds
      # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
      # RInno: Windows-only
@ -108,14 +108,14 @@ steps:
      kubernetes:
        resources:
          requests:
-            memory: 14Gi
+            memory: 5Gi
            cpu: 3000m
          limits:
            memory: 14Gi
            cpu: 3000m
        nodeSelector:
          kubernetes.io/arch: arm64
-          node.kubernetes.io/instance-type: cax31
+          node.kubernetes.io/instance-type: cax41
        tolerations:
          - key: 'CI'
            operator: 'Equal'