build missing pkgs

.woodpecker/build-redhat-8-amd64.yaml

@@ -50,7 +50,7 @@ steps:
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # biplotbootGUI: somehow ubuntu still hangs even when using xvfb-run
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(CRAN = 'https://cran.devxy.io/amd64/rhel8/latest'))); pkgs = c('adamethods', 'adaptIVPT', 'adelie', 'AFM', 'aIc', 'alphashape3d',  'amadeus', 'antaresProcessing', 'Anthropometry', 'Apollonius',  'appeears', 'archeoViz', 'archive', 'aroma.core', 'Arothron',  'atom4R', 'autoslider.core', 'BAwiR', 'bcROCsurface', 'bigGP',  'bigrquerystorage', 'biplotbootGUI', 'BiplotGUI', 'blatr', 'bpca',  'bRacatus', 'brainKCCA', 'brainR', 'BRugs', 'CAESAR.Suite', 'candisc',  'Certara.R', 'Certara.RsNLME', 'ChaosGame', 'cheem', 'circularEV',  'ClaimsProblems', 'clrng', 'ClusROC', 'ClusterStability', 'cncaGUI',  'concom', 'condor', 'ConfidenceEllipse', 'ConsRank', 'ConsRankClass',  'controlfunctionIV', 'CovTools', 'cppcontainers', 'cubing', 'curvHDR',  'D3mirt', 'dataone', 'datapack', 'dbcsp', 'DIDmultiplegtDYN',  'DiscreteFWER', 'do3PCA', 'doMPI', 'doolkit', 'dymo', 'ecocomDP',  'eDITH', 'eegkit', 'espadon', 'ETRep', 'Evomorph', 'excel.link',  'export', 'fabisearch', 'fdaPDE', 'filters', 'fingerPro', 'fitbitViz',  'forestdata', 'FPCdpca', 'frontiles', 'fsbrain', 'FTSgof', 'gellipsoid',  'gensphere', 'geoelectrics', 'geojsonio', 'geomorph', 'GoodFibes',  'gpg', 'GPGame', 'GPoM', 'gpuR', 'greta.censored', 'Greymodels',  'gyro', 'HDiR', 'hillshader', 'HUM', 'HybridMicrobiomes', 'hyper.fit',  'hypergeo2', 'ICSClust', 'interpolation', 'IOLS', 'ivdoctr',  'JFM', 'JSDNE', 'kernhaz', 'KernSmoothIRT', 'KeyboardSimulator',  'kml3d', 'kpcaIG', 'KSgeneral', 'lgpr', 'LSAfun', 'Maeswrap',  'maotai', 'mapping', 'mathml', 'mcauchyd', 'MDSGUI', 'MDSMap',  'MediaNews', 'metadynminer3d', 'metajam', 'MetSizeR', 'mggd',  'minired', 'MLE', 'moc.gapbk', 'molaR', 'morph', 'Morpho', 'morphomap',  'MorphoTools2', 'mregions2', 'mstudentd', 'mully', 'multibiplotGUI',  'MultiscaleDTM', 'MultivariateAnalysis', 'mvhist', 'mvinfluence',  'mvmesh', 'nat', 'nat.nblast', 'nat.templatebrains', 'neo4jshell',  'nesRdata', 'nestedcv', 'NetFACS', 'NetSci', 'NGBVS', 'NGCHM',  'nlgm', 'OceanView', 'OCNet', 'OmopViewer', 'OpenCL', 'optBiomarker',  'optiSolve', 'orthoDr', 'outliers.ts.oga', 'particle.swarm.optimisation',  'patternize', 'Patterns', 'pcaL1', 'pchc', 'pgKDEsphere', 'phylotypr',  'phylter', 'plot3Drgl', 'plumberDeploy', 'PNAR', 'PolisheR',  'polyhedralCubature', 'PPbigdata', 'ppsbm', 'practicalSigni',  'predict3d', 'PRTree', 'prWarp', 'qspray', 'qsub', 'qtlc', 'R2PPT',  'R2wd', 'Racmacs', 'RAINBOWR', 'RationalMatrix', 'ratioOfQsprays',  'ravetools', 'rayshader', 'Rcplex', 'RcppMagicEnum', 'rdflib',  'redatamx', 'redland', 'refreg', 'resultant', 'rFUSION', 'rgl2gltf',  'rglplus', 'Riemann', 'rivnet', 'rmapzen', 'Rmpi', 'robin', 'RobRegression',  'ROI.models.globalOptTests', 'ROI.plugin.cplex', 'ROI.plugin.neos',  'ROI.plugin.qpoases', 'ROI.plugin.symphony', 'rollinglda', 'ROracle',  'rotor', 'Rpadrino', 'RPatternJoin', 'RPEGLMEN', 'RPESE', 'RPointCloud',  'Rpoppler', 'rpyANTs', 'RQdeltaCT', 'RQuantLib', 'RRTCS', 'rsat',  'RSAtools', 'RSDK', 'rsofun', 'RSP', 'RSquaredMI', 'rStrava',  'Rsymphony', 'rties', 'rTLsDeep', 'Rtropical', 'rvMF', 'RWinEdt',  'scMappR', 'segen', 'SEMdeep', 'sendigR', 'shinyExprPortal',  'shinylive', 'shinyMixR', 'smvgraph', 'spaths', 'spectralR',  'spectrino', 'ssh', 'surveyvoi', 'symbolicQspray', 'T4cluster',  'taskscheduleR', 'TDAkit', 'TML', 'Toothnroll', 'triptych', 'tsmarch',  'TukeyRegion', 'uavRmp', 'UBayFS', 'UCSCXenaShiny', 'UnalR',  'valhallr', 'valueSetCompare', 'VICatMix', 'viewpoly', 'VIRF',  'vivid', 'voiceR', 'VOSONDash', 'vvauditor', 'vvcanvas', 'vvdoctor',  'W2CWM2C', 'wallace', 'WaveletETS', 'WaveletGBM', 'WaveletKNN',  'WaveletLSTM', 'WaveletMLbestFL', 'WaverideR', 'waves', 'WCluster',  'wdnr.gis', 'wearables', 'weatherOz', 'webglobe', 'webp', 'weed',  'WeibullFit', 'WeibullR.ALT', 'weightedCL', 'weightedGCM', 'weird',  'winch', 'windows.pls', 'worcs', 'WRI', 'wrTopDownFrag', 'WVPlots',  'wyz.code.metaTesting', 'wyz.code.rdoc', 'wyz.code.testthat',  'xdcclarge', 'xega', 'xegaDerivationTrees', 'xegaDfGene', 'xegaGaGene',  'xegaGeGene', 'xegaGpGene', 'xegaPermGene', 'xegaPopulation',  'xhaz', 'xmpdf', 'xslt', 'yhat', 'ypssc', 'zooimage'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'later', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-8'))"
+      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(CRAN = 'https://cran.devxy.io/amd64/rhel8/latest'))); pkgs = c('aphylo', 'atime'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'later', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-8'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
       # RInno: Windows-only