build missing pkgs

.woodpecker/build-alpine-320-amd64.yaml

@@ -8,6 +8,11 @@ when:
 
 skip_clone: true
 
+matrix:
+  include:
+    - name: 1
+      
+
 steps:
   - name: 'Build binaries'
     image: docker.io/devxygmbh/amd64-binaries-r-alpine-320
@@ -47,7 +52,7 @@ steps:
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); pkgs = c('actel', 'AdhereRViz', 'ajv', 'AlleleShift', 'almanac', 'AntMAN',  'aPCoA', 'apisensr', 'appeears', 'asciicast', 'audubon', 'autoslider.core',  'autostats', 'badgen', 'baguette', 'bartCause', 'bartMan', 'base64',  'bate', 'BayesXsrc', 'bdl', 'behaviorchange', 'bigGP', 'biocompute',  'BiplotGUI', 'blackmarbler', 'blatr', 'bpmnR', 'bRacatus', 'BRugs',  'C50', 'canadamaps', 'CaseBasedReasoning', 'causalHyperGraph',  'causalPAF', 'centerline', 'cffr', 'chilemapas', 'cisp', 'clrng',  'countSTAR', 'CRE', 'CTRing', 'dartR', 'dartR.base', 'dartR.captive',  'dartR.popgen', 'dartR.sexlinked', 'dartR.sim', 'dartR.spatial',  'DGP4LCF', 'DoE.wrapper', 'doMPI', 'EBcoBART', 'ebmc', 'ecocomDP',  'eDITH', 'EFAfactors', 'enerscape', 'epidm', 'epizootic', 'EthSEQ',  'excel.link', 'eyetools', 'fangs', 'fingerPro', 'fmf', 'FrF2.catlg128',  'GENLIB', 'ggESDA', 'glossa', 'gpuR', 'GTFSwizard', 'gto', 'gtreg',  'gwid', 'habtools', 'hdf5r', 'hdf5r.Extra', 'hwig', 'ical', 'ieegio',  'imbalanceDatRel', 'intamapInteractive', 'integr', 'intRinsic',  'intSDM', 'jrSiCKLSNMF', 'js', 'JSconsole', 'jsonld', 'jsonNormalize',  'jsonvalidate', 'juicedown', 'juicyjuice', 'katex', 'kazaam',  'KeyboardSimulator', 'lgpr', 'LPDynR', 'lucas', 'mapping', 'MazamaLocationUtils',  'MazamaSpatialPlots', 'MazamaSpatialUtils', 'MDSGUI', 'medfateland',  'MediaNews', 'Mega2R', 'MetabolomicsBasics', 'metajam', 'midoc',  'minired', 'MMOC', 'moc.gapbk', 'ModTools', 'Morphoscape', 'movegroup',  'MPCR', 'nfl4th', 'nflverse', 'noisemodel', 'OpenCL', 'palaeoverse',  'pastclim', 'pbdMPI', 'pbdSLAP', 'pcaL1', 'pgenlibr', 'pheble',  'phonics', 'plotBart', 'pmclust', 'postdoc', 'PPRL', 'praatpicture',  'predhy.GUI', 'presenter', 'PRISMA2020', 'prismjs', 'R2PPT',  'R2wd', 'Racmacs', 'randomcoloR', 'ravetools', 'Rblpapi', 'rblt',  'RcmdrPlugin.cpd', 'RcmdrPlugin.GWRM', 'RcmdrPlugin.TeachStat',  'RcmdrPlugin.WorldFlora', 'Rcplex', 'RcppCWB', 'RcppMeCab', 'readNSx',  'redatamx', 'ReSurv', 'rFUSION', 'riAFTBART', 'rjade', 'rless',  'rliger', 'rmapshaper', 'rmapzen', 'RmecabKo', 'Rmpi', 'ROI.plugin.cplex',  'ROI.plugin.symphony', 'ROracle', 'Rpoppler', 'RQuantLib', 'rsofun',  'RSP', 'Rsymphony', 'rWCVP', 'RWinEdt', 'SANple', 'sarsop', 'Scalelink',  'secsse', 'SEMdeep', 'SEMgraph', 'SHAPforxgboost', 'shapviz',  'shiny.benchmark', 'shinytest2', 'shrinkTVPVAR', 'simplePHENOTYPES',  'SiMRiv', 'snplinkage', 'spectrino', 'stan4bart', 'stratastats',  'StratifiedRF', 'sugarbag', 'surveyvoi', 'tableschema.r', 'taskscheduleR',  'tern.rbmi', 'tesseract', 'tfrmtbuilder', 'TidyConsultant', 'tiledb',  'TKCat', 'tkImgR', 'tkRplotR', 'twdtw', 'tweetcheck', 'uaparserjs',  'V8', 'valhallr', 'voi', 'vol2birdR', 'vtree', 'xRing'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-320'))"
+      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); pkgs = c('aphylo', 'atime'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'compareGroups', 'pls', 'SNPassoc')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-320'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
       # RInno: Windows-only