build

.woodpecker/alpine-321-amd64-install-deps.yaml

@@ -0,0 +1,53 @@
+when:
+  - event: manual
+    evaluate: 'build == "all"'
+  - event: manual
+    evaluate: 'build == "alpine-321-amd64"'
+  - event: manual
+    evaluate: 'build == "alpine-321-amd64-1"'
+  - event: manual
+    evaluate: 'build == "all-amd64"'
+
+skip_clone: true
+
+steps:
+  - name: 'Install common R deps'
+    image: docker.io/devxygmbh/amd64-binaries-r-alpine-321
+    pull: true
+    environment:
+      GIT_RO_TOKEN:
+        from_secret: git_ro_token
+      GITHUB_PAT:
+        from_secret: github_pat
+      # normal env vars
+      GIT_USER: pat-s
+      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
+      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
+      R_LIBS_USER: /mnt/cache/R-pkgs
+      CCACHE_DIR: /mnt/cache/ccache
+      PLATFORM: alpine-321
+    volumes:
+      - amd64-binaries-r-dep-cache-alpine-321:/mnt/cache
+    commands:
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/bincraftR /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache
+      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
+      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
+      - R -q -e 'packageVersion("bincraftR")'
+    backend_options:
+      kubernetes:
+        resources:
+          requests:
+            memory: 1000Mi
+            cpu: 1000m
+          limits:
+            memory: 1000Mi
+            cpu: 2000m
+        nodeSelector:
+          kubernetes.io/arch: amd64
+          node.kubernetes.io/instance-type: AX42
+        tolerations:
+          - key: 'CI'
+            operator: 'Equal'
+            value: 'true'
+            effect: 'NoSchedule'

.woodpecker/alpine-321-arm64-install-deps.yaml

@@ -0,0 +1,52 @@
+when:
+  - event: manual
+    evaluate: 'build == "all"'
+  - event: manual
+    evaluate: 'build == "alpine-321-arm64"'
+  - event: manual
+    evaluate: 'build == "alpine-321-arm64-1"'
+  - event: manual
+    evaluate: 'build == "all-arm64"'
+
+skip_clone: true
+
+steps:
+  - name: 'Install common R deps'
+    image: docker.io/devxygmbh/arm64-binaries-r-alpine-321
+    pull: true
+    environment:
+      GIT_RO_TOKEN:
+        from_secret: git_ro_token
+      GITHUB_PAT:
+        from_secret: github_pat
+      # normal env vars
+      GIT_USER: pat-s
+      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
+      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
+      R_LIBS_USER: /mnt/cache/R-pkgs
+      CCACHE_DIR: /mnt/cache/ccache
+      PLATFORM: alpine-321
+    volumes:
+      - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache
+    commands:
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache /mnt/cache/R-pkgs/bincraftR /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache
+      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
+      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
+      - R -q -e 'packageVersion("bincraftR")'
+    backend_options:
+      kubernetes:
+        resources:
+          requests:
+            memory: 1000Mi
+            cpu: 1000m
+          limits:
+            memory: 1000Mi
+            cpu: 2000m
+        nodeSelector:
+          kubernetes.io/arch: arm64
+        tolerations:
+          - key: 'CI'
+            operator: 'Equal'
+            value: 'true'
+            effect: 'NoSchedule'

.woodpecker/build-alpine-320-amd64.yaml

@@ -23,7 +23,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -37,19 +37,16 @@ steps:
       BLOCK: 2991:2993
       ARCH: amd64
       NCPUS: 4
-      # memory: 20Gi
-      # INSTANCE_TYPE: ccx23
       STRATEGY: sequential
     # volumes:
     #   - amd64-binaries-r-dep-cache-alpine-320:/mnt/cache
     commands:
       - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
+      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache
-      # for some reason paks pkgcache is often corrupt- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
+      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); pkgs = c('actel', 'AdhereRViz', 'ajv', 'AlleleShift', 'almanac', 'AntMAN',  'aPCoA', 'apisensr', 'appeears', 'asciicast', 'audubon', 'autoslider.core',  'autostats', 'badgen', 'baguette', 'bartCause', 'bartMan', 'base64',  'bate', 'BayesXsrc', 'bdl', 'behaviorchange', 'bigGP', 'biocompute',  'BiplotGUI', 'blackmarbler', 'blatr', 'bpmnR', 'bRacatus', 'BRugs',  'C50', 'canadamaps', 'CaseBasedReasoning', 'causalHyperGraph',  'causalPAF', 'centerline', 'cffr', 'chilemapas', 'cisp', 'clrng',  'countSTAR', 'CRE', 'CTRing', 'dartR', 'dartR.base', 'dartR.captive',  'dartR.popgen', 'dartR.sexlinked', 'dartR.sim', 'dartR.spatial',  'DGP4LCF', 'DoE.wrapper', 'doMPI', 'EBcoBART', 'ebmc', 'ecocomDP',  'eDITH', 'EFAfactors', 'enerscape', 'epidm', 'epizootic', 'EthSEQ',  'excel.link', 'eyetools', 'fangs', 'fingerPro', 'fmf', 'FrF2.catlg128',  'GENLIB', 'ggESDA', 'glossa', 'gpuR', 'GTFSwizard', 'gto', 'gtreg',  'gwid', 'habtools', 'hdf5r', 'hdf5r.Extra', 'hwig', 'ical', 'ieegio',  'imbalanceDatRel', 'intamapInteractive', 'integr', 'intRinsic',  'intSDM', 'jrSiCKLSNMF', 'js', 'JSconsole', 'jsonld', 'jsonNormalize',  'jsonvalidate', 'juicedown', 'juicyjuice', 'katex', 'kazaam',  'KeyboardSimulator', 'lgpr', 'LPDynR', 'lucas', 'mapping', 'MazamaLocationUtils',  'MazamaSpatialPlots', 'MazamaSpatialUtils', 'MDSGUI', 'medfateland',  'MediaNews', 'Mega2R', 'MetabolomicsBasics', 'metajam', 'midoc',  'minired', 'MMOC', 'moc.gapbk', 'ModTools', 'Morphoscape', 'movegroup',  'MPCR', 'nfl4th', 'nflverse', 'noisemodel', 'OpenCL', 'palaeoverse',  'pastclim', 'pbdMPI', 'pbdSLAP', 'pcaL1', 'pgenlibr', 'pheble',  'phonics', 'plotBart', 'pmclust', 'postdoc', 'PPRL', 'praatpicture',  'predhy.GUI', 'presenter', 'PRISMA2020', 'prismjs', 'R2PPT',  'R2wd', 'Racmacs', 'randomcoloR', 'ravetools', 'Rblpapi', 'rblt',  'RcmdrPlugin.cpd', 'RcmdrPlugin.GWRM', 'RcmdrPlugin.TeachStat',  'RcmdrPlugin.WorldFlora', 'Rcplex', 'RcppCWB', 'RcppMeCab', 'readNSx',  'redatamx', 'ReSurv', 'rFUSION', 'riAFTBART', 'rjade', 'rless',  'rliger', 'rmapshaper', 'rmapzen', 'RmecabKo', 'Rmpi', 'ROI.plugin.cplex',  'ROI.plugin.symphony', 'ROracle', 'Rpoppler', 'RQuantLib', 'rsofun',  'RSP', 'Rsymphony', 'rWCVP', 'RWinEdt', 'SANple', 'sarsop', 'Scalelink',  'secsse', 'SEMdeep', 'SEMgraph', 'SHAPforxgboost', 'shapviz',  'shiny.benchmark', 'shinytest2', 'shrinkTVPVAR', 'simplePHENOTYPES',  'SiMRiv', 'snplinkage', 'spectrino', 'stan4bart', 'stratastats',  'StratifiedRF', 'sugarbag', 'surveyvoi', 'tableschema.r', 'taskscheduleR',  'tern.rbmi', 'tesseract', 'tfrmtbuilder', 'TidyConsultant', 'tiledb',  'TKCat', 'tkImgR', 'tkRplotR', 'twdtw', 'tweetcheck', 'uaparserjs',  'V8', 'valhallr', 'voi', 'vol2birdR', 'vtree', 'xRing'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-320'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -75,7 +72,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-320-arm64.yaml

@@ -47,7 +47,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -61,15 +61,13 @@ steps:
       BLOCK: 20896:length(pkgs)
       ARCH: arm64
       NCPUS: 2
-      MEMORY: 14Gi
-      INSTANCE_TYPE: cax31
       STRATEGY: multisession
     volumes:
       - arm64-binaries-r-dep-cache-alpine-320:/mnt/cache
     commands:
       - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
+      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache
-      # for some reason paks pkgcache is often corrupt- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
+      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
@@ -99,7 +97,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)
@@ -108,7 +105,6 @@ steps:
       # - xvfb-run R -q -e 'options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c( 'RcmdrPlugin.orloca', 'RcmdrPlugin.PcaRobust', 'RcmdrPlugin.RiskDemo', 'RcmdrPlugin.RMTCJags', 'RcmdrPlugin.ROC', 'RcmdrPlugin.sos' , 'RcmdrPlugin.survival', 'RcmdrPlugin.TeachingDemos', 'RcmdrPlugin.TeachStat', 'RcmdrPlugin.temis', 'RcmdrPlugin.UCA', 'RcmdrPlugin.WorldFlora', 'streamDAG', 'stan4bart', 'snplinkage', 'saeHB.panel.beta', 'rTwig', 'rswipl', 'RPointCloud', 'rPDBapi', 'rolog', 'rmcfs', 'rjags', 'ResultModelManager', 'RcppCWB', 'RcmdrPlugin.WorldFlora', 'RcmdrPlugin.UCA', 'RcmdrPlugin.temis', 'RcmdrPlugin.TeachStat', 'RcmdrPlugin.TeachingDemos', 'RcmdrPlugin.survival', 'RcmdrPlugin.sos', 'RcmdrPlugin.ROC', 'RcmdrPlugin.RMTCJags', 'RcmdrPlugin.RiskDemo', 'RcmdrPlugin.PcaRobust', 'RclusTool', 'Rbeast', 'rayrender', 'quanteda.textmodels', 'polmineR', 'plotBart', 'NlinTS', 'ndtv', 'overtureR', 'mathml', 'magickGUI', 'lgpr', 'KappaGUI', 'historicalborrow', 'GSODR', 'GRIDCOPULA', 'googleAnalyticsR', 'fluidsynth', 'EventDetectGUI', 'evalITR', 'EBcoBART', 'deeptrafo', 'dbarts', 'CRE', 'countSTAR', 'bartMan', 'bartCause', 'altmeta', 'EthSEQ', 'dartR.spatial', 'dartR.sim', 'gwid', 'Mega2R', 'priorCON', 'prior3D', 'MCARtest', 'designmatch', 'highs', 'ROI.plugin.highs', 'GPCMlasso'); library(bincraftR); options(progressr.enable = TRUE); foo = lapply(pkgs, function(x) build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-320'))'
     backend_options:
       kubernetes:
-        ### PROD-parallel
         resources:
           requests:
             memory: 14Gi
@@ -116,22 +112,6 @@ steps:
           limits:
             memory: 14Gi
             cpu: 3000m
-        ### PROD-sequential
-        # resources:
-        #   requests:
-        #     memory: 14Gi
-        #     cpu: 2000m
-        #   limits:
-        #     memory: 14Gi
-        #     cpu: 3000m
-        # DEBUG
-        # resources:
-        #   requests:
-        #     memory: 4Gi
-        #     cpu: 2000m
-        #   limits:
-        #     memory: 4Gi
-        #     cpu: 2000m
         nodeSelector:
           kubernetes.io/arch: arm64
           node.kubernetes.io/instance-type: cax31

.woodpecker/build-alpine-321-amd64-1.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-amd64-install-deps
+
 steps:
   - name: 'Build binaries'
     image: docker.io/devxygmbh/amd64-binaries-r-alpine-321
@@ -23,7 +26,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -42,13 +45,10 @@ steps:
     volumes:
       - amd64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -74,7 +74,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-amd64-10.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-amd64-install-deps
+
 steps:
   - name: 'Build binaries'
     image: docker.io/devxygmbh/amd64-binaries-r-alpine-321
@@ -23,7 +26,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -42,13 +45,10 @@ steps:
     volumes:
       - amd64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -74,7 +74,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-amd64-2.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-amd64-install-deps
+
 steps:
   - name: 'Build binaries'
     image: docker.io/devxygmbh/amd64-binaries-r-alpine-321
@@ -23,7 +26,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -42,15 +45,10 @@ steps:
     volumes:
       - amd64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt
-      - export MAXWAIT=10; sleep $((RANDOM % MAXWAIT))
-      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -76,7 +74,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-amd64-3.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-amd64-install-deps
+
 steps:
   - name: 'Build binaries'
     image: docker.io/devxygmbh/amd64-binaries-r-alpine-321
@@ -23,7 +26,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -42,15 +45,10 @@ steps:
     volumes:
       - amd64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt
-      - export MAXWAIT=10; sleep $((RANDOM % MAXWAIT))
-      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -76,7 +74,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-amd64-4.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-amd64-install-deps
+
 steps:
   - name: 'Build binaries'
     image: docker.io/devxygmbh/amd64-binaries-r-alpine-321
@@ -23,7 +26,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -42,13 +45,10 @@ steps:
     volumes:
       - amd64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -74,7 +74,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-amd64-5.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-amd64-install-deps
+
 steps:
   - name: 'Build binaries'
     image: docker.io/devxygmbh/amd64-binaries-r-alpine-321
@@ -23,7 +26,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -42,13 +45,10 @@ steps:
     volumes:
       - amd64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -74,7 +74,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-amd64-6.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-amd64-install-deps
+
 steps:
   - name: 'Build binaries'
     image: docker.io/devxygmbh/amd64-binaries-r-alpine-321
@@ -23,7 +26,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -42,15 +45,10 @@ steps:
     volumes:
       - amd64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt
-      - export MAXWAIT=10; sleep $((RANDOM % MAXWAIT))
-      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -76,7 +74,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-amd64-7.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-amd64-install-deps
+
 steps:
   - name: 'Build binaries'
     image: docker.io/devxygmbh/amd64-binaries-r-alpine-321
@@ -23,7 +26,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -42,15 +45,10 @@ steps:
     volumes:
       - amd64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt
-      - export MAXWAIT=10; sleep $((RANDOM % MAXWAIT))
-      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -76,7 +74,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-amd64-8.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-amd64-install-deps
+
 steps:
   - name: 'Build binaries'
     image: docker.io/devxygmbh/amd64-binaries-r-alpine-321
@@ -23,7 +26,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -42,16 +45,10 @@ steps:
     volumes:
       - amd64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt
-      - export MAXWAIT=10; sleep $((RANDOM % MAXWAIT))
-      # - 
-      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -77,7 +74,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-amd64-9.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-amd64-install-deps
+
 steps:
   - name: 'Build binaries'
     image: docker.io/devxygmbh/amd64-binaries-r-alpine-321
@@ -23,7 +26,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -42,13 +45,10 @@ steps:
     volumes:
       - amd64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -74,7 +74,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-arm64-1.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-arm64-install-deps
+
 steps:
   - name: 'Warming up'
     image: busybox:latest
@@ -47,7 +50,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -66,15 +69,10 @@ steps:
     volumes:
       - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt
-      - export MAXWAIT=10; sleep $((RANDOM % MAXWAIT))
-      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -100,7 +98,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-arm64-10.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-arm64-install-deps
+  
 steps:
   - name: 'Warming up'
     image: busybox:latest
@@ -47,7 +50,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -66,15 +69,10 @@ steps:
     volumes:
       - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt
-      - export MAXWAIT=10; sleep $((RANDOM % MAXWAIT))
-      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -100,7 +98,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-arm64-2.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-arm64-install-deps
+
 steps:
   - name: 'Warming up'
     image: busybox:latest
@@ -47,7 +50,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -66,15 +69,11 @@ steps:
     volumes:
       - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt
-      - export MAXWAIT=10; sleep $((RANDOM % MAXWAIT))
       - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -100,7 +99,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-arm64-3.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-arm64-install-deps
+
 steps:
   - name: 'Warming up'
     image: busybox:latest
@@ -47,7 +50,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -66,15 +69,10 @@ steps:
     volumes:
       - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt
-      - export MAXWAIT=10; sleep $((RANDOM % MAXWAIT))
-      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -100,7 +98,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-arm64-4.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-arm64-install-deps
+  
 steps:
   - name: 'Warming up'
     image: busybox:latest
@@ -34,7 +37,7 @@ steps:
             operator: 'Equal'
             value: 'true'
             effect: 'NoSchedule'
-
+            
   - name: 'Build binaries'
     image: docker.io/devxygmbh/arm64-binaries-r-alpine-321
     pull: true
@@ -47,7 +50,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -66,14 +69,10 @@ steps:
     volumes:
       - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt
-R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -99,7 +98,6 @@ R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.gi
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)

.woodpecker/build-alpine-321-arm64-5.yaml

@@ -10,6 +10,9 @@ when:
 
 skip_clone: true
 
+depends_on:
+  - alpine-321-arm64-install-deps
+  
 steps:
   - name: 'Warming up'
     image: busybox:latest
@@ -47,7 +50,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -66,15 +69,10 @@ steps:
     volumes:
       - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache
     commands:
-      - git clone https://pat-s:$$GIT_RO_TOEN@git.devxy.io/devxy/r-pkg-binaries.git .
+      - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt
-      - export MAXWAIT=10; sleep $((RANDOM % MAXWAIT))
-      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
       - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); if (file.exists(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')))) block_start = as.character(data.table::fread(sprintf('/mnt/cache/%s.txt', Sys.getenv('CI_WORKFLOW_NAME')), sep = '\t')) else block_start = Sys.getenv('BLOCK_START'); pkgs = as.character(available.packages('cloud.r-project.org/src/contrib')[, 'Package'])[block_start:$BLOCK_END]; pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-321'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
@@ -100,7 +98,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)