build

.woodpecker/build-redhat-8-amd64.yaml

@@ -23,7 +23,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -44,8 +44,7 @@ steps:
     #   - amd64-binaries-r-dep-cache-redhat-8:/mnt/cache
     commands:
       - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt- R -q -e 'pak::meta_update()'
+      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache
       - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
@@ -76,7 +75,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)
@@ -85,7 +83,6 @@ steps:
       # - xvfb-run R -q -e 'options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c( "RcmdrPlugin.orloca", "RcmdrPlugin.PcaRobust", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.ROC", "RcmdrPlugin.sos" , "RcmdrPlugin.survival", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.TeachStat", "RcmdrPlugin.temis", "RcmdrPlugin.UCA", "RcmdrPlugin.WorldFlora", "streamDAG", "stan4bart", "snplinkage", "saeHB.panel.beta", "rTwig", "rswipl", "RPointCloud", "rPDBapi", "rolog", "rmcfs", "rjags", "ResultModelManager", "RcppCWB", "RcmdrPlugin.WorldFlora", "RcmdrPlugin.UCA", "RcmdrPlugin.temis", "RcmdrPlugin.TeachStat", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.survival", "RcmdrPlugin.sos", "RcmdrPlugin.ROC", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.PcaRobust", "RclusTool", "Rbeast", "rayrender", "quanteda.textmodels", "polmineR", "plotBart", "NlinTS", "ndtv", "overtureR", "mathml", "magickGUI", "lgpr", "KappaGUI", "historicalborrow", "GSODR", "GRIDCOPULA", "googleAnalyticsR", "fluidsynth", "EventDetectGUI", "evalITR", "EBcoBART", "deeptrafo", "dbarts", "CRE", "countSTAR", "bartMan", "bartCause", "altmeta", "EthSEQ", "dartR.spatial", "dartR.sim", "gwid", "Mega2R", "priorCON", "prior3D", "MCARtest", "designmatch", "highs", "ROI.plugin.highs", "GPCMlasso"); library(bincraftR); options(progressr.enable = TRUE); foo = lapply(pkgs, function(x) build_binary_package(x, debug = FALSE, force = TRUE, platform = "amd64"))'
     backend_options:
       kubernetes:
-        ### PROD-parallel
         resources:
           requests:
             memory: 5Gi
@@ -93,22 +90,6 @@ steps:
           limits:
             memory: 20Gi
             cpu: 3000m
-        ### PROD-sequential
-        # resources:
-        #   requests:
-        #     memory: 14Gi
-        #     cpu: 2000m
-        #   limits:
-        #     memory: 14Gi
-        #     cpu: 3000m
-        # DEBUG
-        # resources:
-        #   requests:
-        #     memory: 4Gi
-        #     cpu: 2000m
-        #   limits:
-        #     memory: 4Gi
-        #     cpu: 2000m
         nodeSelector:
           kubernetes.io/arch: amd64
           node.kubernetes.io/instance-type: AX42