build

.woodpecker/build-alpine-320-arm64.yaml

@@ -47,7 +47,7 @@ steps:
         from_secret: aws_secret_access_key
       PGPASS:
         from_secret: pgpass
-      GIT_RO_TOEN:
+      GIT_RO_TOKEN:
         from_secret: git_ro_token
       GITHUB_PAT:
         from_secret: github_pat
@@ -61,15 +61,13 @@ steps:
       BLOCK: 20896:length(pkgs)
       ARCH: arm64
       NCPUS: 2
-      MEMORY: 14Gi
-      INSTANCE_TYPE: cax31
       STRATEGY: multisession
     volumes:
       - arm64-binaries-r-dep-cache-alpine-320:/mnt/cache
     commands:
       - git clone https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/r-pkg-binaries.git .
-      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
-      # for some reason paks pkgcache is often corrupt- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
+      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-pak /mnt/cache/pkgcache/R/pkgcache /mnt/cache/pkgcache/R/pkgcache /mnt/cache/R-pkgs/pkgcache
+      - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
@@ -99,7 +97,6 @@ steps:
       # BRugs: configure: error: OpenBUGS 3.2.2 or later not found. as it is only one package, not doing anything
       # gamstransfer -> gdx/src/gdlib/gmsstrm.cpp:85:70: error: narrowing conversion of '-1' from 'std::char_traits<char>::int_type' {aka 'int'} to 'char' [-Wnarrowing] -> https://github.com/GAMS-dev/transfer-r/issues/2
       # filters: <simpleError: `target` must be a character vector containing no `NA` values.> -> email sent
-
       # magickGUI, biplotbootGUI
       # ymd (alpine, voi)
       # tfrmtbuilder -> V8 (alpine)
@@ -108,7 +105,6 @@ steps:
       # - xvfb-run R -q -e 'options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c( 'RcmdrPlugin.orloca', 'RcmdrPlugin.PcaRobust', 'RcmdrPlugin.RiskDemo', 'RcmdrPlugin.RMTCJags', 'RcmdrPlugin.ROC', 'RcmdrPlugin.sos' , 'RcmdrPlugin.survival', 'RcmdrPlugin.TeachingDemos', 'RcmdrPlugin.TeachStat', 'RcmdrPlugin.temis', 'RcmdrPlugin.UCA', 'RcmdrPlugin.WorldFlora', 'streamDAG', 'stan4bart', 'snplinkage', 'saeHB.panel.beta', 'rTwig', 'rswipl', 'RPointCloud', 'rPDBapi', 'rolog', 'rmcfs', 'rjags', 'ResultModelManager', 'RcppCWB', 'RcmdrPlugin.WorldFlora', 'RcmdrPlugin.UCA', 'RcmdrPlugin.temis', 'RcmdrPlugin.TeachStat', 'RcmdrPlugin.TeachingDemos', 'RcmdrPlugin.survival', 'RcmdrPlugin.sos', 'RcmdrPlugin.ROC', 'RcmdrPlugin.RMTCJags', 'RcmdrPlugin.RiskDemo', 'RcmdrPlugin.PcaRobust', 'RclusTool', 'Rbeast', 'rayrender', 'quanteda.textmodels', 'polmineR', 'plotBart', 'NlinTS', 'ndtv', 'overtureR', 'mathml', 'magickGUI', 'lgpr', 'KappaGUI', 'historicalborrow', 'GSODR', 'GRIDCOPULA', 'googleAnalyticsR', 'fluidsynth', 'EventDetectGUI', 'evalITR', 'EBcoBART', 'deeptrafo', 'dbarts', 'CRE', 'countSTAR', 'bartMan', 'bartCause', 'altmeta', 'EthSEQ', 'dartR.spatial', 'dartR.sim', 'gwid', 'Mega2R', 'priorCON', 'prior3D', 'MCARtest', 'designmatch', 'highs', 'ROI.plugin.highs', 'GPCMlasso'); library(bincraftR); options(progressr.enable = TRUE); foo = lapply(pkgs, function(x) build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-320'))'
     backend_options:
       kubernetes:
-        ### PROD-parallel
         resources:
           requests:
             memory: 14Gi
@@ -116,22 +112,6 @@ steps:
           limits:
             memory: 14Gi
             cpu: 3000m
-        ### PROD-sequential
-        # resources:
-        #   requests:
-        #     memory: 14Gi
-        #     cpu: 2000m
-        #   limits:
-        #     memory: 14Gi
-        #     cpu: 3000m
-        # DEBUG
-        # resources:
-        #   requests:
-        #     memory: 4Gi
-        #     cpu: 2000m
-        #   limits:
-        #     memory: 4Gi
-        #     cpu: 2000m
         nodeSelector:
           kubernetes.io/arch: arm64
           node.kubernetes.io/instance-type: cax31