cache images

docker/Containerfile-ubuntu-2404

@@ -1,15 +1,26 @@
-FROM ubuntu:noble
+FROM ubuntu:noble as jags
 
-ARG R_VERSION=4.4.1
+RUN apt update && apt install -y --no-install-recommends curl make ca-certificates gcc g++ gfortran liblapack-dev
+# These usually are not packaged in OS repositories and need to be installed from source
+# - JAGS (needed for runjags which itself is again a dependency of many packages)
+RUN curl -q -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure --enable-silent-rules && make 2>&1 
+
+FROM ubuntu:noble as final
+
+ARG R_VERSION=4.4.2
 ENV PATH=/opt/R/${R_VERSION}/bin:$PATH
 ENV TZ="Europe/Berlin"
 ENV DEBIAN_FRONTEND=noninteractive 
 
 ENV ARCH=arm64
 ENV NCPUS=2
+ENV R_LIBS_USER=/mnt/cache/R-pkgs
+ENV R_PKG_CACHE_DIR=/mnt/cache/pkgcache
 
 ARG GITHUB_PAT
 
+COPY --link --from=jags /JAGS-4.3.2 /JAGS-4.3.2
+
 # xvfb: for graphical pkgs requiring tcl, like gWidgets2tcltk
 # tcl tk tk-dev tk-table: must be available before running xvfb-run (i.e. starting the graphical session)
 # libmecab-dev: RcppMeCab -> no autodetection yet
@@ -17,9 +28,8 @@ ARG GITHUB_PAT
 RUN apt update && apt install -y --no-install-recommends gdebi-core g++ gfortran libbz2-dev libblas-dev libicu-dev liblapack-dev liblzma-dev libpaper-utils libpcre2-dev libtcl8.6 libtk8.6 libxt6 unzip zip zlib1g-dev libpcre3-dev libopenblas-dev curl ca-certificates make ccache htop libgit2-dev git libpq-dev libxml2-dev libgit2-dev cmake xvfb libcurl4-openssl-dev xz-utils tcl tk tk-dev tk-table pkg-config libmecab-dev libfftw3-dev automake
 
 ### CUSTOM DEPENDENCIES 
-# These usually are not packaged in OS repositories and need to be installed from source
-# - JAGS (needed for runjags which itself is again a dependency of many packages)
-RUN curl -q -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure --enable-silent-rules && make 2>&1 && make install 2>&1 >/dev/null && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
+# JAGS
+RUN cd /JAGS-4.3.2 && make 2>&1 && make install 2>&1 >/dev/null && rm -rf JAGS-4.3.2 && cd ..
 # - Chromium should be auto-installed once pkgdepends merges the latest system-requirements rule changes
 RUN apt-get install -y software-properties-common && \
   add-apt-repository -y ppa:xtradeb/apps && \
@@ -27,7 +37,7 @@ RUN apt-get install -y software-properties-common && \
   apt install -y chromium
 
 ### INSTALL R
-RUN curl -O "https://devxy-r-builds.s3.eu-central-2.amazonaws.com/2404/r-${R_VERSION}_1_$(dpkg --print-architecture).deb"
+RUN curl -O "https://devxy-r-builds.s3.eu-central-003.backblazeb2.com/2404/r-${R_VERSION}_1_$(dpkg --print-architecture).deb"
 RUN gdebi -n -qq "r-${R_VERSION}_1_$(dpkg --print-architecture).deb" && rm "r-${R_VERSION}_1_$(dpkg --print-architecture).deb"
 RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
 
@@ -37,13 +47,17 @@ RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/
 RUN mkdir -p /root/.R && bash -c 'echo -e "CXX_STD = CXX14\nCFLAGS += -flax-vector-conversions\nCC=ccache gcc\nCPP=gcc -E\nCXXCPP=gcc -e\nCXX=ccache g++\nCXX11=ccache g++\nCXX14=ccache g++\nCXX17=ccache g++\nF77=gfortran\nFC=gfortran" >> /root/.R/Makevars'
 
 # R repos
-RUN bash -c 'echo -e "options(encoding = \"UTF-8\", pkg.sysreqs_verbose = TRUE, crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL, repos = structure(c(CRAN = \"https://cran.devxy.io/$ARCH/noble/latest\", INLA = \"https://inla.r-inla-download.org/R/stable\")))" > ~/.Rprofile'
+RUN bash -c 'echo -e "options(pkg.sysreqs_verbose = TRUE, crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL, repos = structure(c(CRAN = \"https://cran.devxy.io/amd64/noble/latest\", INLA = \"https://inla.r-inla-download.org/R/stable\")))" > ~/.Rprofile'
 
-RUN R -q -e 'pak::pak(c("DBI", "R6", "RPostgres", "Rcpp", "askpass", "base64enc", "bit64", "bit", "blob", "callr", "cli", "credentials", "curl", "data.table", "desc", "digest", "dplyr", "fansi", "fs", "future.apply", "future", "generics", "gert", "globals", "glue", "hms", "httr", "jsonlite", "lgr", "lifecycle", "listenv", "lubridate", "magrittr", "mime", "openssl", "parallelly", "paws.common", "paws.storage", "pillar", "pkgbuild", "pkgconfig", "processx", "progressr", "ps", "purrr", "rlang", "rstudioapi", "s3fs", "stringi", "stringr", "sys", "tibble", "tidyselect", "timechange", "utf8", "vctrs", "withr", "xml2", "zip", "codetools", "cranlike", "RSQLite", "cachem", "crayon", "debugme", "fastmap", "memoise", "progress", "future.callr", "dbplyr"))'
+# these dirs will later be used by the CI with existing mounts
+RUN mkdir -p /mnt/cache/packages /mnt/cache/pkgcache /mnt/cache/R-pkgs
+
+RUN R -q -e "pak::pak(c('DBI', 'R6', 'RPostgres', 'Rcpp', 'askpass', 'base64enc', 'bit64', 'bit', 'blob', 'callr', 'cli', 'credentials', 'curl', 'data.table', 'desc', 'digest', 'dplyr', 'fansi', 'fs', 'future.apply', 'future', 'generics', 'gert', 'globals', 'glue', 'hms', 'httr', 'jsonlite', 'lgr', 'lifecycle', 'listenv', 'lubridate', 'magrittr', 'mime', 'openssl', 'parallelly', 'paws.common', 'paws.storage', 'pillar', 'pkgbuild', 'pkgconfig', 'processx', 'progressr', 'ps', 'purrr', 'rlang', 'rstudioapi', 's3fs', 'stringi', 'stringr', 'sys', 'tibble', 'tidyselect', 'timechange', 'utf8', 'vctrs', 'withr', 'xml2', 'zip', 'codetools', 'cranlike', 'RSQLite', 'cachem', 'crayon', 'debugme', 'fastmap', 'memoise', 'progress', 'future.callr', 'dbplyr'))"
+
+RUN apt install -y locales && echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen \
+  && locale-gen en_US.utf8 \
+  && /usr/sbin/update-locale LANG=en_US.UTF-8
 
-COPY --link . .
-# remove secrets from COPY
-RUN touch /.Renviron /.envrc && rm /.Renviron /.envrc
 RUN R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
 
 CMD ["/bin/bash"]