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This commit is contained in:
Patrick Schratz 2024-11-26 14:13:24 +01:00
commit 3d5a815004
Signed by: pat-s
GPG key ID: 3C6318841EF78925
1 changed files with 102 additions and 52 deletions
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17
docker/Containerfile-ubuntu-2204
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@ -14,6 +14,8 @@ ENV DEBIAN_FRONTEND=noninteractive
ENV ARCH=arm64
ENV NCPUS=2
ENV R_LIBS_USER=/mnt/cache/R-pkgs
ENV R_PKG_CACHE_DIR=/mnt/cache/pkgcache
ARG GITHUB_PAT
@ -35,7 +37,7 @@ RUN apt-get install -y software-properties-common && \
apt install -y chromium
### INSTALL R
RUN curl -O "https://devxy-r-builds.s3.eu-central-2.amazonaws.com/2204/r-${R_VERSION}_1_$(dpkg --print-architecture).deb"
RUN curl -O "https://devxy-r-builds.s3.eu-central-003.backblazeb2.com/2204/r-${R_VERSION}_1_$(dpkg --print-architecture).deb"
RUN gdebi -n -qq "r-${R_VERSION}_1_$(dpkg --print-architecture).deb" && rm "r-${R_VERSION}_1_$(dpkg --print-architecture).deb"
RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
@ -45,14 +47,17 @@ RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/
RUN mkdir -p /root/.R && bash -c 'echo -e "CXX_STD = CXX14\nCFLAGS += -flax-vector-conversions\nCC=ccache gcc\nCPP=gcc -E\nCXXCPP=gcc -e\nCXX=ccache g++\nCXX11=ccache g++\nCXX14=ccache g++\nCXX17=ccache g++\nF77=gfortran\nFC=gfortran" >> /root/.R/Makevars'
# R repos
RUN bash -c 'echo -e "options(encoding = \"UTF-8\", pkg.sysreqs_verbose = TRUE, crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL, repos = structure(c(CRAN = \"https://cran.devxy.io/$ARCH/jammy/latest\", INLA = \"https://inla.r-inla-download.org/R/stable\")))" > ~/.Rprofile'
RUN bash -c 'echo -e "options(pkg.sysreqs_verbose = TRUE, crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL, repos = structure(c(CRAN = \"https://cran.devxy.io/amd64/jammy/latest\", INLA = \"https://inla.r-inla-download.org/R/stable\")))" > ~/.Rprofile'
# these dirs will later be used by the CI with existing mounts
RUN mkdir -p /mnt/cache/packages /mnt/cache/pkgcache /mnt/cache/R-pkgs
RUN R -q -e 'dir.create(Sys.getenv("R_LIBS_USER"), recursive = TRUE)'
RUN R -q -e "pak::pak(c('DBI', 'R6', 'RPostgres', 'Rcpp', 'askpass', 'base64enc', 'bit64', 'bit', 'blob', 'callr', 'cli', 'credentials', 'curl', 'data.table', 'desc', 'digest', 'dplyr', 'fansi', 'fs', 'future.apply', 'future', 'generics', 'gert', 'globals', 'glue', 'hms', 'httr', 'jsonlite', 'lgr', 'lifecycle', 'listenv', 'lubridate', 'magrittr', 'mime', 'openssl', 'parallelly', 'paws.common', 'paws.storage', 'pillar', 'pkgbuild', 'pkgconfig', 'processx', 'progressr', 'ps', 'purrr', 'rlang', 'rstudioapi', 's3fs', 'stringi', 'stringr', 'sys', 'tibble', 'tidyselect', 'timechange', 'utf8', 'vctrs', 'withr', 'xml2', 'zip', 'codetools', 'cranlike', 'RSQLite', 'cachem', 'crayon', 'debugme', 'fastmap', 'memoise', 'progress', 'future.callr', 'dbplyr'))"
# COPY --link . .
# remove secrets from COPY
# RUN touch /.Renviron /.envrc && rm /.Renviron /.envrc
RUN apt install -y locales && echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen \
&& locale-gen en_US.utf8 \
&& /usr/sbin/update-locale LANG=en_US.UTF-8
RUN R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
CMD ["/bin/bash"]