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feat(local): just rebuild builds across all installed R minors

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- Dockerfile: install bincraft into each R minor, run a primary pass plus a
  sensitive-only pass under every other /opt/R/[0-9]* minor (deduped by minor),
  probe/skip xvfb, set GIT_TERMINAL_PROMPT=0; extra-minor failures are non-fatal.
- build-one.R: add --sensitive-only mode, log + shallow-clone the ABI classify
  step, and clear cranlike's stale ./PACKAGES.db before each index refresh
  (workaround for the "table packages already exists" bug; pending cranlike fix).
This commit is contained in:
Patrick Schratz 2026-06-14 13:02:48 +02:00
commit 3ae4672d66
Signed by: pat-s
GPG key ID: 3C6318841EF78925
1 changed files with 65 additions and 7 deletions
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34
docker/build-one.Dockerfile
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@ -25,8 +25,36 @@ RUN --mount=type=secret,id=b2_access,required=true \
export B2_S3_SECRET_KEY="$(cat /run/secrets/b2_secret)" && \
export PGPASS="$(cat /run/secrets/pgpass)" && \
export GITHUB_PAT="$(cat /run/secrets/github_pat 2>/dev/null || true)" && \
/opt/R/${R_VERSION}/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.0") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.0")' && \
XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); \
export GIT_TERMINAL_PROMPT=0 && \
export OTEL_SDK_DISABLED=true && \
XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run || true); \
XVFB_ARGS=""; \
if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi; \
$XVFB $XVFB_ARGS -- /opt/R/${R_VERSION}/bin/Rscript /work/build-one.R "${PACKAGE}" ${VERSIONS}
USE_XVFB=0; \
if [ -n "$XVFB" ] && $XVFB -a $XVFB_ARGS -- true >/dev/null 2>&1; then \
USE_XVFB=1; echo "Using virtual display via $XVFB"; \
else \
echo "No working virtual display; building without xvfb" >&2; \
fi; \
run_build() { if [ "$USE_XVFB" = 1 ]; then $XVFB -a $XVFB_ARGS -- "$@"; else "$@"; fi; }; \
ensure_bincraft() { "$1" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.1") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.1")'; }; \
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2); \
seen=" $PRIMARY_MINOR "; \
prc=0; failed=""; \
echo "=== primary pass under R $R_VERSION ==="; \
ensure_bincraft /opt/R/${R_VERSION}/bin/R; \
run_build /opt/R/${R_VERSION}/bin/Rscript /work/build-one.R "${PACKAGE}" ${VERSIONS} || prc=$?; \
for RBIN in /opt/R/*/bin/Rscript; do \
[ -x "$RBIN" ] || continue; \
RV=$(basename "$(dirname "$(dirname "$RBIN")")"); \
case "$RV" in [0-9]*) ;; *) continue ;; esac; \
RMINOR=$(echo "$RV" | cut -d. -f1-2); \
case "$seen" in *" $RMINOR "*) continue ;; esac; \
seen="$seen$RMINOR "; \
echo "=== sensitive-only pass under R $RV ==="; \
ensure_bincraft "$(dirname "$RBIN")/R"; \
run_build "$RBIN" /work/build-one.R --sensitive-only "${PACKAGE}" ${VERSIONS} || failed="$failed $RV"; \
done; \
if [ -n "$failed" ]; then echo "WARNING: extra-minor build(s) failed (non-fatal; e.g. a version too old to compile on a newer R):$failed" >&2; fi; \
if [ "$prc" != 0 ]; then echo "primary pass under R $R_VERSION failed (exit $prc)" >&2; fi; \
exit "$prc"