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install bincraftR from git repo

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This commit is contained in:
Patrick Schratz 2024-11-22 19:42:08 +01:00
commit 37a48b8b81
Signed by: pat-s
GPG key ID: 3C6318841EF78925
27 changed files with 36 additions and 46 deletions
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2
.woodpecker/build-alpine-320-amd64.yaml
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@ -37,7 +37,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
# more complicated system dependencies which pak cannot resolve # more complicated system dependencies which pak cannot resolve
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages

2
.woodpecker/build-alpine-320-arm64.yaml
View file

@ -61,7 +61,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
# more complicated system dependencies which pak cannot resolve # more complicated system dependencies which pak cannot resolve
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages

2
.woodpecker/build-redhat-8-arm64.yaml
View file

@ -61,7 +61,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
# more complicated system dependencies which pak cannot resolve # more complicated system dependencies which pak cannot resolve
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages

2
.woodpecker/build-redhat-9-amd64.yaml
View file

@ -60,7 +60,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
# more complicated system dependencies which pak cannot resolve # more complicated system dependencies which pak cannot resolve
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages

2
.woodpecker/build-redhat-9-arm64.yaml
View file

@ -61,7 +61,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
# more complicated system dependencies which pak cannot resolve # more complicated system dependencies which pak cannot resolve
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages

2
.woodpecker/build-ubuntu-2204-amd64.yaml
View file

@ -37,7 +37,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
# more complicated system dependencies which pak cannot resolve # more complicated system dependencies which pak cannot resolve
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages

4
.woodpecker/build-ubuntu-2204-arm64.yaml
View file

@ -61,7 +61,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/gert - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/gert
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
# more complicated system dependencies which pak cannot resolve # more complicated system dependencies which pak cannot resolve
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
@ -70,7 +70,7 @@ steps:
# - Rsymphony/ROI.plugin.symphony/adea/PortfolioAnalytics -> can't install/link external SYMPHONY lib (only on RHEL, as for others syslib exists) # - Rsymphony/ROI.plugin.symphony/adea/PortfolioAnalytics -> can't install/link external SYMPHONY lib (only on RHEL, as for others syslib exists)
# - Rglpk # - Rglpk
# biplotbootGUI: somehow ubuntu still hangs even when using xvfb-run # biplotbootGUI: somehow ubuntu still hangs even when using xvfb-run
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(devxy = 'https://cran.devxy.io/arm64/jammy/latest', CRAN = 'https://cloud.r-project.org'))); library(dplyr); library(bincraftR); cran_pkgs = tools::CRAN_package_db()[['Package']]; '%nin%' <- Negate('%in%'); foo = query_metadata_table() |> filter(platform == 'ubuntu-2204', arch == 'arm64') |> distinct(name) |> pull(name); pkgs <- dput(cran_pkgs[cran_pkgs %nin% foo][0:300]); options(progressr.enable = TRUE); pkgs = c('aIc', 'asremlPlus', 'assignR', 'BiplotGUI', 'blatr', 'BNSP', 'BRugs', 'clrng', 'deeptrafo', 'doconv', 'excel.link', 'fBasics', 'filters', 'gpuR', 'imbalanceDatRel', 'IMIFA', 'KeyboardSimulator', 'KSgeneral', 'lgpr', 'MDSGUI', 'MediaNews', 'minired', 'R2PPT', 'R2wd', 'Racmacs', 'ravetools', 'Rblpapi', 'Rcplex', 'RcppCWB', 'redatamx', 'rFUSION', 'Rmpi', 'RWinEdt', 'simplexreg', 'simplextree', 'simPop', 'simputation', 'SimReg', 'simRestore', 'SiMRiv', 'simStateSpace', 'simstudy', 'SimSurvNMarker', 'simts', 'singR', 'SiPhyNetwork', 'SIRmcmc', 'sirt', 'sirus', 'sisireg', 'SIT', 'SITH', 'sitmo', 'sits', 'SK4FGA', 'SKAT', 'sketching', 'SKFCPD', 'sklarsomega', 'skm', 'skpr', 'slasso', 'slcm', 'sld', 'sleev', 'slfm', 'SLHD', 'SLOPE', 'slp', 'smaa', 'smam', 'smartsnp', 'smcryptoR', 'smfishHmrf', 'smfsb', 'smile', 'SMITIDvisu', 'SMMA', 'SMME', 'smmR', 'smoof', 'smooth', 'SmoothHazard', 'smoothSurv', 'smurf', 'SMUT', 'sna', 'SnowballC', 'SNPknock', 'snplist', 'snpsettest', 'SNSeg', 'SobolSequence', 'socceR', 'social', 'sodium', 'SoftBart', 'softImpute', 'som', 'sorcering', 'SoundexBR', 'sourcetools', 'sox', 'sp', 'spAbundance', 'spacefillr', 'SpaceTimeBSS', 'SpaCOAP', 'SpaDES.tools', 'spam', 'spam64', 'spaMM', 'sparcl', 'SparseChol', 'sparseDFM', 'sparsegl', 'sparseHessianFD', 'sparseinv', 'SparseLPM', 'sparseLTSEigen', 'SparseM', 'SPARSEMODr', 'sparsereg', 'sparsesvd', 'sparseSVM', 'SparseTSCGM', 'sparsevb', 'sparsevctrs', 'sparsio', 'sparta', 'sparvaride', 'spass', 'spate', 'spatgraphs', 'spaths', 'spatial', 'SpatialBSS', 'SpatialEpi', 'SpatialExtremes', 'SpatialGEV', 'spatialising', 'SpatialKDE', 'SpatialKWD', 'SpatialPack', 'spatialreg', 'spatialrisk', 'SpatialTools', 'spatialwarnings', 'spatialwidget', 'SpatMCA', 'SpaTopic', 'SpatPCA', 'spatstat.Knet', 'spatstat.linnet', 'spatstat.model', 'spatstat.random', 'spatstat.sparse', 'spbal', 'spBayes', 'spBayesSurv', 'spBFA', 'Spbsampling', 'spc', 'spCP', 'spcr', 'spdep', 'spduration', 'speakeasyR', 'SPECIES', 'specklestar', 'specs', 'SpecsVerification', 'spectralGraphTopology', 'Spectran', 'spectre', 'spectrino', 'sped', 'speedytax', 'spfa', 'spFW', 'spGARCH', 'spgs', 'spgwr', 'sphunif', 'spiderbar', 'spikeslab', 'spinBayes', 'splancs', 'SPlit', 'SplitGLM', 'SplitReg', 'splmm', 'splusTimeDate', 'splusTimeSeries', 'spMC', 'spNNGP', 'spOccupancy', 'sport', 'spray', 'spreadr', 'springer', 'sprintr', 'SPSP', 'spsurv', 'spTDyn', 'SpTe2M', 'spTimer', 'squat', 'srm', 'ssh', 'Sshaped', 'SSLR', 'ssMousetrack', 'SSN2', 'SSOSVM', 'sspse', 'sstvars', 'stable', 'staggered', 'stan4bart', 'StanMoMo', 'STAREG', 'starma', 'starsExtra', 'STARTdesign', 'starvz', 'statcomp', 'statgenIBD', 'statgenQTLxT', 'statip', 'STB', 'stcos', 'stcpR6', 'stdvectors', 'steepness', 'stelfi', 'stepPlr', 'steps', 'StepSignalMargiLike', 'stepSplitReg', 'StepwiseTest', 'stfit', 'stima', 'stlplus', 'StochBlock', 'stochQN', 'stockR', 'stocks', 'stosim', 'stpm', 'stpp', 'stpphawkes', 'strat', 'stratEst', 'StrathE2E2', 'stratification', 'strawr', 'stream', 'streambugs', 'strex', 'strider', 'string2path', 'stringdist', 'stringfish', 'stringi', 'stringmagic', 'striprtf', 'strucchangeRcpp', 'StuteTest', 'subplex', 'subrank', 'SubTite', 'SubTS', 'sumFREGAT', 'SummaryLasso', 'sumR', 'sumSome', 'supclust', 'supercells', 'SuperExactTest', 'SuperGauss', 'SuperpixelImageSegmentation', 'SuperRanker', 'SuppDists', 'surbayes', 'sureLDA', 'SurrogateBMA', 'SurrogateRegression', 'surtvep', 'survAUC', 'survC1', 'surveil', 'SurvEval', 'surveybootstrap', 'surveygraph', 'surveysd', 'surveyvoi', 'survIDINRI', 'survidm', 'survival'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2204'))" - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(devxy = 'https://cran.devxy.io/arm64/jammy/latest', CRAN = 'https://cloud.r-project.org'))); library(dplyr); library(bincraftR); cran_pkgs = tools::CRAN_package_db()[['Package']]; '%nin%' <- Negate('%in%'); foo = query_metadata_table() |> filter(platform == 'ubuntu-2204', arch == 'arm64') |> distinct(name) |> pull(name); pkgs <- dput(cran_pkgs[cran_pkgs %nin% foo][0:300]); options(progressr.enable = TRUE); pkgs = c('aIc', 'BiplotGUI', 'blatr', 'BNSP', 'BRugs', 'clrng', 'deeptrafo', 'excel.link', 'filters', 'gpuR', 'imbalanceDatRel', 'IMIFA', 'KeyboardSimulator', 'KSgeneral', 'lgpr', 'MDSGUI', 'MediaNews', 'minired', 'R2PPT', 'R2wd', 'Racmacs', 'ravetools', 'Rblpapi', 'Rcplex', 'RcppCWB', 'redatamx', 'rFUSION', 'Rmpi', 'RWinEdt', 'spectrino', 'SubTite', 'SubTS', 'sumFREGAT', 'SummaryLasso', 'sumR', 'sumSome', 'supclust', 'supercells', 'SuperExactTest', 'SuperGauss', 'SuperpixelImageSegmentation', 'SuperRanker', 'SuppDists', 'surbayes', 'sureLDA', 'SurrogateBMA', 'SurrogateRegression', 'surtvep', 'survAUC', 'survC1', 'surveil', 'SurvEval', 'surveybootstrap', 'surveygraph', 'surveysd', 'surveyvoi', 'survIDINRI', 'survidm', 'survival', 'SurvivalClusteringTree', 'survivalmodels', 'survivalREC', 'survivalROC', 'survival.svb', 'survPresmooth', 'survSNP', 'survstan', 'svd', 'svglite', 'svines', 'swatches', 'swdpwr', 'sweater', 'swephR', 'SymTS', 'taskscheduleR', 'testarguments', 'tiledb'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2204'))"
### Manual pkg builds ### Manual pkg builds
# webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
# RInno: Windows-only # RInno: Windows-only

2
.woodpecker/build-ubuntu-2404-amd64.yaml
View file

@ -37,7 +37,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
# more complicated system dependencies which pak cannot resolve # more complicated system dependencies which pak cannot resolve
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages

2
.woodpecker/build-ubuntu-2404-arm64.yaml
View file

@ -61,7 +61,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
# more complicated system dependencies which pak cannot resolve # more complicated system dependencies which pak cannot resolve
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages

2
.woodpecker/process-updates-alpine-320-amd64.yaml
View file

@ -32,7 +32,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point

2
.woodpecker/process-updates-alpine-320-arm64.yaml
View file

@ -58,7 +58,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point

2
.woodpecker/process-updates-redhat-8-arm64.yaml
View file

@ -58,7 +58,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point

2
.woodpecker/process-updates-redhat-9-amd64.yaml
View file

@ -33,7 +33,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point

2
.woodpecker/process-updates-redhat-9-arm64.yaml
View file

@ -58,7 +58,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point

2
.woodpecker/process-updates-ubuntu-2204-amd64.yaml
View file

@ -34,7 +34,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point

2
.woodpecker/process-updates-ubuntu-2204-arm64.yaml
View file

@ -58,7 +58,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point

2
.woodpecker/process-updates-ubuntu-2404-amd64.yaml
View file

@ -32,7 +32,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point

2
.woodpecker/process-updates-ubuntu-2404-arm64.yaml
View file

@ -63,7 +63,7 @@ steps:
- rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres
# for some reason paks pkgcache is often corrupt # for some reason paks pkgcache is often corrupt
- rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/ - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
- R -q -e 'pak::meta_update()' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point

5
.woodpecker/update-package-index-alpine-320-amd64.yaml
View file

@ -24,9 +24,8 @@ steps:
# download latest package version (avoid having to rebuild image every time) # download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git . - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
- rm -rf /mnt/cache/packages/* # - rm -rf /mnt/cache/packages/*
- rm -rf /mnt/cache/R-pkgs/stringr - R -q -e 'packageVersion("bincraftR")'
- R CMD INSTALL .
- R -q -e 'pak::pak(c("pat-s/desc@description-from-remote", "pat-s/cranlike@s3"))' - R -q -e 'pak::pak(c("pat-s/desc@description-from-remote", "pat-s/cranlike@s3"))'
- cd /mnt/cache/packages - cd /mnt/cache/packages
- R -q -e 'options(crayon.enabled = TRUE); library(bincraftR); future::plan("multisession", workers = 2); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index()' - R -q -e 'options(crayon.enabled = TRUE); library(bincraftR); future::plan("multisession", workers = 2); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index()'

5
.woodpecker/update-package-index-alpine-320-arm64.yaml
View file

@ -24,9 +24,8 @@ steps:
# download latest package version (avoid having to rebuild image every time) # download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git . - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
- rm -rf /mnt/cache/packages/* # - rm -rf /mnt/cache/packages/*
- rm -rf /mnt/cache/R-pkgs/stringr - R -q -e 'packageVersion("bincraftR")'
- R CMD INSTALL .
- R -q -e 'pak::pak(c("pat-s/desc@description-from-remote", "pat-s/cranlike@s3"))' - R -q -e 'pak::pak(c("pat-s/desc@description-from-remote", "pat-s/cranlike@s3"))'
- cd /mnt/cache/packages - cd /mnt/cache/packages
- R -q -e 'options(crayon.enabled = TRUE); library(bincraftR); future::plan("multisession", workers = 2); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index()' - R -q -e 'options(crayon.enabled = TRUE); library(bincraftR); future::plan("multisession", workers = 2); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index()'

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