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This commit is contained in:
Patrick Schratz 2024-09-04 23:31:30 +02:00
commit 344e5d860a
Signed by: pat-s
GPG key ID: 3C6318841EF78925
5 changed files with 10 additions and 10 deletions
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4
docker/Dockerfile-alpine-320
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@ -24,7 +24,7 @@ RUN apk add -q --no-cache R-dev curl ca-certificates bash g++ tzdata openjdk17 t
RUN mkdir ~/.R && echo -e "CXXFLAGS+=-D__MUSL__\nCPPFLAGS+= -D__MUSL__\nLDFLAGS+=-fPIC" >> ~/.R/Makevars RUN mkdir ~/.R && echo -e "CXXFLAGS+=-D__MUSL__\nCPPFLAGS+= -D__MUSL__\nLDFLAGS+=-fPIC" >> ~/.R/Makevars
### INSTALL R ### INSTALL R
RUN curl -O https://devxy-r-builds.s3.eu-central-003.backblazeb2.com/alpine320/r-4.4.1_1_$(arch).apk RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/alpine320/r-4.4.1_1_$(arch).apk
RUN apk add --allow-untrusted r-4.4.1_1_$(arch).apk && rm r-4.4.1_1_$(arch).apk RUN apk add --allow-untrusted r-4.4.1_1_$(arch).apk && rm r-4.4.1_1_$(arch).apk
RUN R -q -e 'install.packages("remotes", repo = "cloud.r-project.org"); remotes::install_github("pat-s/pak@alpine")' RUN R -q -e 'install.packages("remotes", repo = "cloud.r-project.org"); remotes::install_github("pat-s/pak@alpine")'
@ -33,6 +33,6 @@ COPY . .
# FIXME: switch to pak after https://github.com/r-lib/pak/issues/628 # FIXME: switch to pak after https://github.com/r-lib/pak/issues/628
RUN export ARCH=$(echo $(uname -m | sed -e 's/x86_64/amd64/' -e 's/aarch64/arm64/')) && \ RUN export ARCH=$(echo $(uname -m | sed -e 's/x86_64/amd64/' -e 's/aarch64/arm64/')) && \
R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE); options(Ncpus = 4, repos = structure(c(devxy = sprintf("https://cran.devxy.io/%s/alpine320/latest", Sys.getenv("ARCH")), CRAN = "https://cloud.r-project.org"))); install.packages("remotes"); remotes::install_deps()' R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE); options(Ncpus = 4, repos = structure(c(devxy = sprintf("https://cran.devxy.io/%s/alpine320/latest", Sys.getenv("ARCH")), CRAN = "https://cloud.r-project.org"))); install.packages("remotes"); remotes::install_deps()'
RUN r-pkg-binaries RUN rm -rf r-pkg-binaries
CMD ["/bin/bash"] CMD ["/bin/bash"]

4
docker/Dockerfile-redhat-8
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@ -15,13 +15,13 @@ RUN dnf install -y -q https://dl.fedoraproject.org/pub/epel/8/Everything/aarch64
RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd .. RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
### INSTALL R ### INSTALL R
RUN curl -O https://devxy-r-builds.s3.eu-central-003.backblazeb2.com/el8/R-4.4.1-1-1.aarch64.rpm RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/el8/R-4.4.1-1-1.aarch64.rpm
RUN dnf install -q -y R-4.4.1-1-1.aarch64.rpm RUN dnf install -q -y R-4.4.1-1-1.aarch64.rpm
RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))' RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
COPY . . COPY . .
# FIXME: switch to pak after https://github.com/r-lib/pak/issues/628 # FIXME: switch to pak after https://github.com/r-lib/pak/issues/628
RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE); options(Ncpus = 4, repos = structure(c(devxy = "https://cran.devxy.io/arm64/rhel8/latest", CRAN = "https://cloud.r-project.org"))); install.packages("remotes"); remotes::install_deps()' RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE); options(Ncpus = 4, repos = structure(c(devxy = "https://cran.devxy.io/arm64/rhel8/latest", CRAN = "https://cloud.r-project.org"))); install.packages("remotes"); remotes::install_deps()'
RUN r-pkg-binaries RUN rm -rf r-pkg-binaries
CMD ["/bin/bash"] CMD ["/bin/bash"]

4
docker/Dockerfile-redhat-9
View file

@ -15,13 +15,13 @@ RUN dnf install -y -q lapack-devel git gcc g++ fontconfig-devel fribidi-devel li
RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd .. RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
### INSTALL R ### INSTALL R
RUN curl -O https://devxy-r-builds.s3.eu-central-003.backblazeb2.com/el9/R-4.4.1-1-1.aarch64.rpm RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/el9/R-4.4.1-1-1.aarch64.rpm
RUN dnf install -q -y R-4.4.1-1-1.aarch64.rpm RUN dnf install -q -y R-4.4.1-1-1.aarch64.rpm
RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))' RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
COPY . . COPY . .
# FIXME: switch to pak after https://github.com/r-lib/pak/issues/628 # FIXME: switch to pak after https://github.com/r-lib/pak/issues/628
RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE); options(Ncpus = 4, repos = structure(c(devxy = "https://cran.devxy.io/arm64/rhel9/latest", CRAN = "https://cloud.r-project.org"))); install.packages("remotes"); remotes::install_deps()' RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE); options(Ncpus = 4, repos = structure(c(devxy = "https://cran.devxy.io/arm64/rhel9/latest", CRAN = "https://cloud.r-project.org"))); install.packages("remotes"); remotes::install_deps()'
RUN r-pkg-binaries RUN rm -rf r-pkg-binaries
CMD ["/bin/bash"] CMD ["/bin/bash"]

4
docker/Dockerfile-ubuntu-2204
View file

@ -12,13 +12,13 @@ RUN apt update && apt install -y --no-install-recommends gdebi-core g++ gfortran
RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd .. RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
### INSTALL R ### INSTALL R
RUN curl -O https://devxy-r-builds.s3.eu-central-003.backblazeb2.com/2204/r-4.4.1_1_arm64.deb RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/2204/r-4.4.1_1_arm64.deb
RUN gdebi -n -qq r-4.4.1_1_arm64.deb && rm r-4.4.1_1_arm64.deb RUN gdebi -n -qq r-4.4.1_1_arm64.deb && rm r-4.4.1_1_arm64.deb
RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))' RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
COPY . . COPY . .
# FIXME: switch to pak after https://github.com/r-lib/pak/issues/628 # FIXME: switch to pak after https://github.com/r-lib/pak/issues/628
RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE); options(Ncpus = 4, repos = structure(c(devxy = "https://cran.devxy.io/arm64/jammy/latest", CRAN = "https://cloud.r-project.org"))); install.packages("remotes"); remotes::install_deps()' RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE); options(Ncpus = 4, repos = structure(c(devxy = "https://cran.devxy.io/arm64/jammy/latest", CRAN = "https://cloud.r-project.org"))); install.packages("remotes"); remotes::install_deps()'
RUN r-pkg-binaries RUN rm -rf r-pkg-binaries
CMD ["/bin/bash"] CMD ["/bin/bash"]

4
docker/Dockerfile-ubuntu-2404
View file

@ -12,13 +12,13 @@ RUN apt update && apt install -y --no-install-recommends gdebi-core g++ gfortran
RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd .. RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
### INSTALL R ### INSTALL R
RUN curl -O https://devxy-r-builds.s3.eu-central-003.backblazeb2.com/2404/r-4.4.1_1_arm64.deb RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/2404/r-4.4.1_1_arm64.deb
RUN gdebi -n -qq r-4.4.1_1_arm64.deb && rm r-4.4.1_1_arm64.deb RUN gdebi -n -qq r-4.4.1_1_arm64.deb && rm r-4.4.1_1_arm64.deb
RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))' RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
COPY . . COPY . .
# FIXME: switch to pak after https://github.com/r-lib/pak/issues/628 # FIXME: switch to pak after https://github.com/r-lib/pak/issues/628
RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE); options(Ncpus = 4, repos = structure(c(devxy = "https://cran.devxy.io/arm64/noble/latest", CRAN = "https://cloud.r-project.org"))); install.packages("remotes"); remotes::install_deps()' RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE); options(Ncpus = 4, repos = structure(c(devxy = "https://cran.devxy.io/arm64/noble/latest", CRAN = "https://cloud.r-project.org"))); install.packages("remotes"); remotes::install_deps()'
RUN r-pkg-binaries RUN rm -rf r-pkg-binaries
CMD ["/bin/bash"] CMD ["/bin/bash"]