refactor: containerfile setups

docker/Containerfile-ubuntu

@@ -0,0 +1,68 @@
+ARG OS_VERSION
+FROM devxygmbh/ubuntu-jags:${OS_VERSION} AS jags
+
+ARG OS_VERSION
+FROM ubuntu:${OS_VERSION} AS final
+
+ARG R_VERSION
+ENV PATH=/opt/R/${R_VERSION}/bin:$PATH
+ENV TZ="Europe/Berlin"
+ENV DEBIAN_FRONTEND=noninteractive
+
+ENV NCPUS=2
+ENV R_LIBS_USER=/mnt/cache/R-pkgs
+ENV R_PKG_CACHE_DIR=/mnt/cache/pkgcache
+
+ARG GITHUB_PAT
+
+COPY --link --from=jags /JAGS-4.3.2 /JAGS-4.3.2
+
+# xvfb: for graphical pkgs requiring tcl, like gWidgets2tcltk
+# tcl tk tk-dev tk-table: must be available before running xvfb-run (i.e. starting the graphical session)
+# libmecab-dev: RcppMeCab -> no autodetection yet
+# libfftw3-dev: ravetools -> actually auto-detect but somehow doesn't work in container?
+RUN apt update && apt install -y --no-install-recommends gdebi-core g++ gfortran libbz2-dev libblas-dev libicu-dev liblapack-dev liblzma-dev libpaper-utils libpcre2-dev libtcl8.6 libtk8.6 libxt6 unzip zip zlib1g-dev libpcre3-dev libopenblas-dev curl ca-certificates make ccache htop libgit2-dev git libpq-dev libxml2-dev libgit2-dev cmake xvfb libcurl4-openssl-dev xz-utils tcl tk tk-dev tk-table pkg-config libmecab-dev libfftw3-dev automake
+
+### CUSTOM DEPENDENCIES
+# - Chromium should be auto-installed once pkgdepends merges the latest system-requirements rule changes
+RUN apt-get install -y software-properties-common && \
+  add-apt-repository -y ppa:xtradeb/apps && \
+  apt update && \
+  apt install -y chromium
+
+ARG OS_VERSION
+ARG R_VERSION
+RUN if [ "$OS_VERSION" = "jammy" ]; then \
+    OS_VERSION_TRIM=2204; \
+    CXX_STD=14; \
+  elif [ "$OS_VERSION" = "noble" ]; then \
+    OS_VERSION_TRIM=2404; \
+    CXX_STD=17; \
+  fi; \
+  if [ "$(arch)" = "x86_64" ]; then \
+    export ARCH=amd64; \
+  elif [ "$(arch)" = "aarch64" ]; then \
+    export ARCH=arm64; \
+  fi; \
+  curl -v -O "https://devxy-r-builds.fsn1.your-objectstorage.com/${OS_VERSION_TRIM}/r-${R_VERSION}_1_$(dpkg --print-architecture).deb" && \
+  gdebi -n -qq "r-${R_VERSION}_1_$(dpkg --print-architecture).deb" && \
+  rm "r-${R_VERSION}_1_$(dpkg --print-architecture).deb" && \
+  R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))' && \
+  mkdir -p /root/.R && \
+  bash -c 'echo -e "CXX_STD = $CXX_STD\nCFLAGS += -flax-vector-conversions\nCC=ccache gcc\nCPP=gcc -E\nCXXCPP=gcc -e\nCXX=ccache g++\nCXX11=ccache g++\nCXX14=ccache g++\nCXX17=ccache g++\nF77=gfortran\nFC=gfortran" >> /root/.R/Makevars' && \
+  bash -c 'echo -e "options(pkg.sysreqs_verbose = TRUE, crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL, repos = structure(c(CRAN = \"https://cran.devxy.io/$ARCH/${OS_VERSION}/latest\", INLA = \"https://inla.r-inla-download.org/R/stable\")))" > ~/.Rprofile'
+
+### Makevars
+# dbarts: CFLAGS += -flax-vector-conversions (https://github.com/vdorie/dbarts/issues/66)
+# can't set ccache for gfortran because of https://gitlab.com/roigrp/solver/highs/-/issues/4
+
+# these dirs will later be used by the CI with existing mounts
+RUN mkdir -p /mnt/cache/packages /mnt/cache/pkgcache /mnt/cache/R-pkgs
+
+RUN apt install -y locales && echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen \
+  && locale-gen en_US.utf8 \
+  && /usr/sbin/update-locale LANG=en_US.UTF-8
+
+RUN R -q -e 'getOption("repos"); pak::pak("git::https://codefloe.com/rpkgs/bincraftr.git", dependencies = TRUE)'
+
+CMD ["/bin/bash"]