chore: resolve latest bincraft release dynamically (no hardcoded pins) (#107)
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## Summary
Stop hardcoding the bincraft version. Every `.crow` workflow and the build-one image pinned `@vX.Y.Z` (and a `packageVersion() != "X.Y.Z"` guard), so each bincraft release meant editing the version in ~8 places — and it was easy to miss one (the Dockerfile lagged at v4.2.1; v4.4.1 shipped without the empty-env fix because of exactly this churn).
## Change
New `local/install-bincraft.R` resolves the **latest release tag dynamically**:
- `git ls-remote --tags` on the public repo (no token),
- keep `vX.Y.Z` tags, pick the highest version (filtered/sorted in R for portability, not via git `--sort`/refspec which behaved inconsistently under `system2()`),
- `pak::pak("git::…@<latest>")` — idempotent on the git ref, so re-runs keep the package unless a newer tag exists.
All call sites now invoke the helper instead of a pinned version:
- `.crow/build-all-versions.yaml` (primary + per-minor pass)
- `.crow/build-all-versions-install-deps.yaml`
- `.crow/process-updates.yaml` (primary + per-minor pass)
- `.crow/weekly-rebuild-missing.yaml`
- `.crow/archive-missed-packages.yaml`
- `docker/build-one.Dockerfile` (ships the helper into the image; `ensure_bincraft` sources it)
## Effect
Tag a new bincraft release → the next CI run / `just rebuild` picks it up automatically. No more pin edits, and no more "forgot to bump the Dockerfile" drift.
## Verified
- Resolver returns the current latest tag (`v4.4.2`) via `git ls-remote` + R-side version sort.
- All five workflow YAMLs parse; helper R parses; air/editorconfig clean.
Note: this tracks the latest **tag**, so cutting a release is still the deliberate gate — CI won't pick up un-tagged main.
Reviewed-on: #107
This commit is contained in:
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commit
1ad7a6bfe9
7 changed files with 62 additions and 8 deletions
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@ -62,7 +62,7 @@ steps:
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GIT_USER: pat-s
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GIT_USER: pat-s
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R_VERSION: 4.5.3
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R_VERSION: 4.5.3
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commands:
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commands:
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- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.4.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.4.2", dependencies = TRUE)'
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- /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
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- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
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- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
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- /opt/R/$R_VERSION/bin/R -q -e 'bincraft::process_unarchived_pkgs(Sys.getenv("CODENAME"), Sys.getenv("ARCH"), s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"), workers = 2L)'
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- /opt/R/$R_VERSION/bin/R -q -e 'bincraft::process_unarchived_pkgs(Sys.getenv("CODENAME"), Sys.getenv("ARCH"), s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"), workers = 2L)'
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backend_options:
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backend_options:
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@ -78,7 +78,7 @@ steps:
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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# Pin the same bincraft version the build steps use, so the precomputed
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# Pin the same bincraft version the build steps use, so the precomputed
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# snapshot and the per-agent library stay consistent across the pipeline.
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# snapshot and the per-agent library stay consistent across the pipeline.
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- /opt/R/$R_VERSION/bin/R -q -e 'pak::sysreqs_db_update(); pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.4.2"); pak::pak(c("RPostgres", "s3fs", "data.table", "future", "jsonlite")); packageVersion("bincraft")'
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- /opt/R/$R_VERSION/bin/R -q -e 'pak::sysreqs_db_update(); source("local/install-bincraft.R"); pak::pak(c("RPostgres", "s3fs", "data.table", "future", "jsonlite")); packageVersion("bincraft")'
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- /opt/R/$R_VERSION/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); saveRDS(pkgs[r_minor_sensitive == TRUE], '/mnt/cache/packages/r_minor_sensitive_pkgs.rds'); sprintf('Precomputed %s package versions (%s r-minor-sensitive)', nrow(pkgs), nrow(pkgs[r_minor_sensitive == TRUE]))"
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- /opt/R/$R_VERSION/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); saveRDS(pkgs[r_minor_sensitive == TRUE], '/mnt/cache/packages/r_minor_sensitive_pkgs.rds'); sprintf('Precomputed %s package versions (%s r-minor-sensitive)', nrow(pkgs), nrow(pkgs[r_minor_sensitive == TRUE]))"
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backend_options:
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backend_options:
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docker:
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docker:
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@ -124,7 +124,7 @@ steps:
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# to a zero-length value and breaks every metadata query and the sysdeps
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# to a zero-length value and breaks every metadata query and the sysdeps
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# install). Pin bincraft here, exactly like the R-minor pass below.
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# install). Pin bincraft here, exactly like the R-minor pass below.
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- rm -rf /mnt/cache/R-pkgs/00LOCK-*
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- rm -rf /mnt/cache/R-pkgs/00LOCK-*
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- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.4.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.4.2")'
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- /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
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- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
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- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
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- $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/$R_VERSION/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1
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- $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/$R_VERSION/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1
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- |
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- |
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@ -136,7 +136,7 @@ steps:
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echo "=== R-minor-sensitive pass under R $RV ==="
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echo "=== R-minor-sensitive pass under R $RV ==="
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LIB="/mnt/cache/R-pkgs-$RMINOR"
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LIB="/mnt/cache/R-pkgs-$RMINOR"
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mkdir -p "$LIB"
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mkdir -p "$LIB"
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R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.4.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.4.2")' || true
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R_LIBS_USER="$LIB" "$(dirname "$RBIN")/Rscript" local/install-bincraft.R || true
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R_LIBS_USER="$LIB" $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- "$(dirname "$RBIN")/Rscript" local/build-all.R --sensitive-only $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1 || true
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R_LIBS_USER="$LIB" $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- "$(dirname "$RBIN")/Rscript" local/build-all.R --sensitive-only $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1 || true
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done
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done
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# archive missed packages; first arg is the codename (e.g. "alpine324"),
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# archive missed packages; first arg is the codename (e.g. "alpine324"),
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@ -195,7 +195,7 @@ steps:
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commands:
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commands:
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
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- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
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- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.4.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.4.2")'
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- /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
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- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
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- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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# rhel-10 ships xwfb-run (Xwayland) instead of xvfb-run; prefer it and start weston, else fall back to xvfb-run
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# rhel-10 ships xwfb-run (Xwayland) instead of xvfb-run; prefer it and start weston, else fall back to xvfb-run
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@ -211,7 +211,7 @@ steps:
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echo "=== R-minor-sensitive update pass under R $RV ==="
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echo "=== R-minor-sensitive update pass under R $RV ==="
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LIB="/mnt/cache/R-pkgs-$RMINOR"
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LIB="/mnt/cache/R-pkgs-$RMINOR"
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mkdir -p "$LIB"
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mkdir -p "$LIB"
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R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.4.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.4.2")' || true
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R_LIBS_USER="$LIB" "$(dirname "$RBIN")/Rscript" local/install-bincraft.R || true
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R_LIBS_USER="$LIB" $XVFB $XVFB_ARGS -- "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = '${OS}', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, patches = 'local/patches', r_minor_detection = 'classifier',r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
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R_LIBS_USER="$LIB" $XVFB $XVFB_ARGS -- "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = '${OS}', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, patches = 'local/patches', r_minor_detection = 'classifier',r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
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done
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done
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- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "${OS_ID}", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
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- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "${OS_ID}", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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- rm -rf /mnt/cache/R-pkgs/00LOCK-*
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- rm -rf /mnt/cache/R-pkgs/00LOCK-*
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- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.4.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.4.2")'
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- /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
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- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
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- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
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- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
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- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
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- /opt/R/$R_VERSION/bin/R -q -e 'pak::pak("httr2")'
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- /opt/R/$R_VERSION/bin/R -q -e 'pak::pak("httr2")'
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WORKDIR /work
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WORKDIR /work
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COPY build-one.R /work/build-one.R
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COPY build-one.R /work/build-one.R
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# Resolve and install the latest bincraft release dynamically (no hardcoded pin).
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COPY install-bincraft.R /work/install-bincraft.R
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# Ship the patch registry so build-one.R's `patches = "local/patches"` resolves
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# Ship the patch registry so build-one.R's `patches = "local/patches"` resolves
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# (build context is `local/`, CWD is /work).
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# (build context is `local/`, CWD is /work).
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COPY patches /work/local/patches
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COPY patches /work/local/patches
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echo "No working virtual display; building without xvfb" >&2; \
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echo "No working virtual display; building without xvfb" >&2; \
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fi; \
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fi; \
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run_build() { if [ "$USE_XVFB" = 1 ]; then $XVFB -a $XVFB_ARGS -- "$@"; else "$@"; fi; }; \
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run_build() { if [ "$USE_XVFB" = 1 ]; then $XVFB -a $XVFB_ARGS -- "$@"; else "$@"; fi; }; \
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ensure_bincraft() { "$1" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.4.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.4.2")'; }; \
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ensure_bincraft() { "$1" -q -e 'source("/work/install-bincraft.R")'; }; \
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PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2); \
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PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2); \
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seen=" $PRIMARY_MINOR "; \
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seen=" $PRIMARY_MINOR "; \
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prc=0; failed=""; \
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prc=0; failed=""; \
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52
local/install-bincraft.R
Normal file
52
local/install-bincraft.R
Normal file
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#!/usr/bin/env Rscript
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# Install the latest tagged bincraft release, resolved dynamically, so the CI
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# workflows and the build-one image never pin a hardcoded version (no more
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# editing `@vX.Y.Z` in many places on every release).
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#
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# Run with the R whose library should receive bincraft:
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# Rscript local/install-bincraft.R
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# or, to target a specific R from a shell loop:
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# "$RBIN" -q -e 'source("local/install-bincraft.R")'
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#
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# How it works: list the remote tags with `git ls-remote` (no token needed for
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# the public repo), keep the `vX.Y.Z` release tags, pick the highest version,
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# and install it with pak. pak is idempotent on the git ref, so re-running keeps
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# the package when it is already current and only updates when a newer tag ships.
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# Filtering/sorting is done in R (not via git's `--sort`/refspec) so behaviour is
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# identical across git versions and `system2()` argument handling.
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repo_url <- Sys.getenv(
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"BINCRAFT_GIT_URL",
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unset = "https://codefloe.com/rpkgs/bincraft.git"
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)
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# GIT_TERMINAL_PROMPT=0 keeps a non-interactive run from hanging on auth.
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refs <- system2(
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"git",
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|
c("ls-remote", "--tags", repo_url),
|
||||||
|
stdout = TRUE,
|
||||||
|
stderr = FALSE,
|
||||||
|
env = "GIT_TERMINAL_PROMPT=0"
|
||||||
|
)
|
||||||
|
tags <- sub(".*refs/tags/", "", refs)
|
||||||
|
tags <- tags[!grepl("\\^\\{\\}$", tags)] # drop dereferenced "...^{}" lines
|
||||||
|
tags <- grep("^v[0-9]", tags, value = TRUE) # only vX.Y.Z release tags
|
||||||
|
if (length(tags) == 0L) {
|
||||||
|
stop(
|
||||||
|
"Could not resolve any bincraft release tag from ",
|
||||||
|
repo_url,
|
||||||
|
call. = FALSE
|
||||||
|
)
|
||||||
|
}
|
||||||
|
latest <- tags[order(package_version(sub("^v", "", tags)), decreasing = TRUE)][
|
||||||
|
1L
|
||||||
|
]
|
||||||
|
|
||||||
|
message(sprintf("Installing latest bincraft release: %s", latest))
|
||||||
|
pak::pak(sprintf("git::%s@%s", repo_url, latest))
|
||||||
|
message(sprintf(
|
||||||
|
"bincraft %s installed (%s)",
|
||||||
|
as.character(utils::packageVersion("bincraft")),
|
||||||
|
latest
|
||||||
|
))
|
||||||
Loading…
Reference in a new issue