debug
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4 changed files with 21 additions and 8 deletions
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@ -29,12 +29,12 @@ steps:
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# download latest package version (avoid having to rebuild image every time)
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# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
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- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/arm64-r-binaries.git && cd arm64-r-binaries
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- R -q -e 'install.packages(".", repos = NULL, quiet = FALSE); packageVersion("rBinaries")'
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- R -q -e 'install.packages(".", repos = NULL, quiet = TRUE); packageVersion("rBinaries")'
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# manually install some packages into the cache so that some builds don't fail
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# Hmisc -> ABCanalysis
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# - R -q -e 'pak::pak("Hmisc")'
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs
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- R -q -e 'options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = "error"); pkgs = tools::CRAN_package_db()[[1]][3:3]; library(rBinaries); future::plan("multisession", workers = 4, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE))'
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- R -q -e 'options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = "error"); pkgs = tools::CRAN_package_db()[[1]][3:3]; library(rBinaries); future::plan("multisession", workers = 4, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = TRUE, force = TRUE))'
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backend_options:
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kubernetes:
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resources:
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@ -195,6 +195,11 @@ build_single_tag <- function(
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# bytes to MB in binary format
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file_size <- round(as.numeric(fs::file_size(sprintf("%s/%s_%s.tar.gz", dir_out_bin, package_name, tag))) / (1024^2), 2)
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if (debug) {
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cli::cli_alert_warning("DEBUG: total_build_time: {total_build_time}")
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cli::cli_alert_warning("DEBUG: file_size: {file_size}")
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}
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# skip DB connection if package already exists
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if (file.exists(sprintf("%s/%s_%s.tar.gz", dir_out_bin, package_name, tag))) {
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con <- DBI::dbConnect(RPostgres::Postgres(),
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@ -8,8 +8,6 @@ add_to_package_index <- function(
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bucket = "devxy-arm64-r-binaries",
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codename = NULL, r_minor_version = NULL,
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build_for_minor = FALSE) {
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cli::cli_h2("Building package index")
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codename <- set_codename(codename)
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if (is.null(r_minor_version)) {
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r_minor_version <- sub("R version (\\d+\\.\\d+).*", "\\1", R.Version()$version.string)
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@ -40,15 +38,25 @@ add_to_package_index <- function(
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cranlike::add_PACKAGES(file_names, local_bin_dir)
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cli::cli_alert("{.fun create_package_index}: Uploading PACKAGES* files to S3.")
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purrr::walk2(
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dummy <- purrr::walk2(
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sprintf("%s/%s", local_bin_dir, c("PACKAGES.db", "PACKAGES.rds", "PACKAGES.gz")),
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sprintf("%s/%s", remote_bin_dir, c("PACKAGES.db", "PACKAGES.rds", "PACKAGES.gz")),
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\(x, y) s3fs::s3_file_upload(x, y, overwrite = TRUE)
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)
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s3fs::s3_file_upload(sprintf("%s/PACKAGES", local_bin_dir), sprintf("%s/PACKAGES", remote_bin_dir), overwrite = TRUE)
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pkgs_upload_local <- sprintf("%s/PACKAGES", local_bin_dir)
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pkgs_upload_remote <- sprintf("%s/PACKAGES", remote_bin_dir)
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if (debug) {
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cli::cli_alert_danger("DEBUG: PACKAGES UPLOAD local dir: {pkgs_upload_local}")
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cli::cli_alert_danger("DEBUG: PACKAGES UPLOAD remote dir: {pkgs_upload_remote}")
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}
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dummy <- s3fs::s3_file_upload(pkgs_upload_local, pkgs_upload_remote, overwrite = TRUE)
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# s3fs::s3_file_upload(
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# sprintf("%s/%s", local_bin_dir, c("PACKAGES", "PACKAGES.db", "PACKAGES.rds", "PACKAGES.gz")),
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# sprintf("%s", remote_bin_dir, c("PACKAGES", "PACKAGES.db", "PACKAGES.rds", "PACKAGES.gz")),
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# overwrite = TRUE
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# )
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return(invisible(TRUE))
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}
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@ -19,8 +19,8 @@ upload_single_binary_to_s3 <- function(
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remote_bin_path <- set_bin_path(r_minor_version, build_for_minor, local_build_root = bucket, codename)
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if (debug) {
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cli::cli_alert_danger("DEBUG: dir_out_bin: {dir_out_bin}, codename: {codename}")
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cli::cli_alert_danger("DEBUG: Body: {sprintf('%s/%s', dir_out_bin, tarball_name)}")
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cli::cli_alert_danger("DEBUG: local_bin_path: {local_bin_path}")
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cli::cli_alert_danger("DEBUG: remote_bin_path: {remote_bin_path}")
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}
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s3fs::s3_file_system(
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