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pin alpine320

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This commit is contained in:
Patrick Schratz 2025-02-09 09:27:44 +01:00
commit 153594584c
Signed by: pat-s
GPG key ID: 3C6318841EF78925
1 changed files with 6 additions and 6 deletions
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docker/Containerfile-alpine-320
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@ -1,13 +1,13 @@
FROM alpine:3.21 AS jags
FROM alpine:3.20 AS jags
RUN apk add -q --no-cache curl tar make lapack lapack-dev blas blas-dev gcc gfortran g++ git cmake tk-dev xz
# These usually are not packaged in OS repositories and need to be installed from source
# - JAGS (needed for runjags which itself is again a dependency of many packages)
RUN curl -s -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && \
tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure --enable-silent-rules && make 2>&1
tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure --enable-silent-rules && make 2>&1
FROM alpine:3.21 AS final
FROM alpine:3.20 AS final
ARG R_VERSION=4.4.2
ENV PATH=/opt/R/${R_VERSION}/bin:$PATH
@ -27,7 +27,7 @@ COPY --link --from=jags /JAGS-4.3.2 /JAGS-4.3.2
# # xvfb: for graphical pkgs requiring tcl, like gWidgets2tcltk
RUN apk add -q --no-cache curl tar make lapack lapack-dev blas blas-dev gcc gfortran g++ htop git cmake tk-dev xvfb xvfb-run xorg-server xauth xinit xz libdeflate libdeflate-dev
### CUSTOM DEPENDENCIES
### CUSTOM DEPENDENCIES
# These usually are not packaged in OS repositories and need to be installed from source
# - JAGS (needed for runjags which itself is again a dependency of many packages)
RUN curl -q -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure --enable-silent-rules && make 2>&1 && make install 2>&1 >/dev/null && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
@ -47,7 +47,7 @@ RUN apk add --no-cache --update --repository=https://dl-cdn.alpinelinux.org/alpi
# https://github.com/RcppCore/Rcpp/issues/448#issuecomment-220148774
# LDFLAGS+=-fPIC -> arrow (https://github.com/r-hub/r-minimal/blob/main/examples/arrow/Dockerfile)
# dbarts: CFLAGS += -flax-vector-conversions (https://github.com/vdorie/dbarts/issues/66)
# CXXFLAGS: -> Rcpp
# CXXFLAGS: -> Rcpp
# -DDMLC_USE_FOPEN64=0 -> xgboost (https://github.com/dmlc/xgboost/issues/8595)
# can't set ccache for gfortran because of https://gitlab.com/roigrp/solver/highs/-/issues/4
RUN mkdir -p /root/.R && bash -c 'echo -e "CXX_STD = CXX14\nCXXFLAGS=-D__MUSL__ -DDMLC_USE_FOPEN64=0\nCPPFLAGS=-D__MUSL__ -DDMLC_USE_FOPEN64=0\nCFLAGS += -flax-vector-conversions\nLDFLAGS+=-fPIC\nCC=ccache gcc\nCPP=gcc -E\nCXXCPP=gcc -e\nCXX=ccache g++\nCXX11=ccache g++\nCXX14=ccache g++\nCXX17=ccache g++\nF77=gfortran\nFC=gfortran" > /root/.R/Makevars'
@ -70,4 +70,4 @@ RUN sed -i 's/,//g' /opt/R/${R_VERSION}/lib/R/library/utils/iconvlist
RUN R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git", dependencies = TRUE)'
CMD ["/bin/bash"]
CMD ["/bin/bash"]