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Code Issues 11 Pull requests 1 Releases Activity

image regressions

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This commit is contained in:
Patrick Schratz 2024-11-26 23:08:26 +01:00
commit 11db4556b3
Signed by: pat-s
GPG key ID: 3C6318841EF78925
1 changed files with 29 additions and 11 deletions
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9
docker/Containerfile-redhat-9
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@ -17,6 +17,8 @@ ARG R_VERSION=4.4.2
ARG RED_HAT_DEV_PW
ENV PATH=/opt/R/${R_VERSION}/bin:$PATH
ENV TZ="Europe/Berlin"
ENV R_LIBS_USER=/mnt/cache/R-pkgs
ENV R_PKG_CACHE_DIR=/mnt/cache/pkgcache
ENV ARCH=arm64
ENV NCPUS=2
@ -31,7 +33,7 @@ RUN dnf install -y https://dl.fedoraproject.org/pub/epel/epel-release-latest-9.n
# ImageMagick-c++-devel ImageMagick-devel: boths are not auto-installed via pak sysreqs
# mecab-devel: RcppMeCab -> no autodetection yet
# libfftw3-dev: ravetools -> actually auto-detect but somehow doesn't work in container?
RUN dnf install -y -q make lapack-devel git gcc gcc-c++ fontconfig-devel fribidi-devel libjpeg-turbo-devel libtiff-devel postgresql-devel htop libgit2-devel libxml2-devel hiredis ccache cmake xorg-x11-server-Xvfb ImageMagick-c++-devel ImageMagick-devel xz pkg-config mecab-devel fftw-devel tk-devel automake
RUN dnf install -y -q make lapack-devel git gcc gcc-c++ fontconfig-devel fribidi-devel libjpeg-turbo-devel libtiff-devel postgresql-devel htop libgit2-devel libxml2-devel hiredis ccache cmake xorg-x11-server-Xvfb ImageMagick-c++-devel ImageMagick-devel xz pkg-config mecab-devel fftw-devel tk-devel automake readline-devel
### CUSTOM DEPENDENCIES
# These usually are not packaged in OS repositories and need to be installed from source
@ -41,7 +43,7 @@ RUN cd /JAGS-4.3.2 && make 2>&1 && make install 2>&1 >/dev/null && rm -rf JAGS-4
RUN dnf install -y chromium
### INSTALL R
RUN curl -O "https://devxy-r-builds.s3.eu-central-003.backblazeb2.com/el8/R-${R_VERSION}-1-1.$(arch).rpm"
RUN curl -O "https://devxy-r-builds.s3.eu-central-003.backblazeb2.com/el9/R-${R_VERSION}-1-1.$(arch).rpm"
RUN dnf install -q -y "R-${R_VERSION}-1-1.$(arch).rpm" && rm "R-${R_VERSION}-1-1.$(arch).rpm"
RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
@ -54,6 +56,9 @@ RUN mkdir -p /root/.R && bash -c 'echo -e "CXX_STD = CXX14\nCFLAGS += -flax-vect
RUN bash -c 'echo -e "options(crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL, repos = structure(c(CRAN = \"https://cran.devxy.io/$ARCH/rhel9/latest\", INLA = \"https://inla.r-inla-download.org/R/stable\")))" > /root/.Rprofile'
RUN bash -c 'echo -e "PKG_SYSREQS = TRUE\nPKG_SYSREQS_VERBOSE = TRUE\nPKG_SYSREQS_PLATFORM=\"redhat-9\"" > /root/.Renviron'
# these dirs will later be used by the CI with existing mounts
RUN mkdir -p /mnt/cache/packages /mnt/cache/pkgcache /mnt/cache/R-pkgs
# FIXME: switch to pak after https://github.com/r-lib/pak/issues/628
# deps from pak::pkg_deps(".")$package
RUN R -q -e 'pak::pak(c("DBI", "R6", "RPostgres", "Rcpp", "askpass", "base64enc", "bit64", "bit", "blob", "callr", "cli", "credentials", "curl", "data.table", "desc", "digest", "dplyr", "fansi", "fs", "future.apply", "future", "generics", "gert", "globals", "glue", "hms", "httr", "jsonlite", "lgr", "lifecycle", "listenv", "lubridate", "magrittr", "mime", "openssl", "parallelly", "paws.common", "paws.storage", "pillar", "pkgbuild", "pkgconfig", "processx", "progressr", "ps", "purrr", "rlang", "rstudioapi", "s3fs", "stringi", "stringr", "sys", "tibble", "tidyselect", "timechange", "utf8", "vctrs", "withr", "xml2", "zip", "codetools", "cranlike", "RSQLite", "cachem", "crayon", "debugme", "fastmap", "memoise", "progress", "future.callr", "dbplyr"))'