build

.woodpecker/build-redhat-8-arm64.yaml

@@ -63,7 +63,7 @@ steps:
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('adamethods', 'adaptIVPT', 'adelie', 'AFM', 'aIc', 'alphashape3d',  'amadeus', 'antaresProcessing', 'Anthropometry', 'Apollonius',  'appeears', 'archeoViz', 'archive', 'Arothron', 'atom4R', 'autoslider.core',  'BAwiR', 'bcROCsurface', 'bigGP', 'bigrquerystorage', 'biplotbootGUI',  'BiplotGUI', 'blatr', 'bpca', 'bRacatus', 'brainKCCA', 'brainR',  'BRugs', 'CAESAR.Suite', 'candisc', 'Certara.R', 'Certara.RsNLME',  'ChaosGame', 'cheem', 'circularEV', 'ClaimsProblems', 'clrng',  'ClusROC', 'ClusterStability', 'cncaGUI', 'concom', 'condor',  'ConfidenceEllipse', 'ConsRank', 'ConsRankClass', 'controlfunctionIV',  'CovTools', 'cppcontainers', 'cubing', 'curvHDR', 'D3mirt', 'dataone',  'datapack', 'dbcsp', 'DIDmultiplegtDYN', 'DiscreteFWER', 'do3PCA',  'doMPI', 'doolkit', 'dymo', 'ecocomDP', 'eDITH', 'eegkit', 'espadon',  'ETRep', 'Evomorph', 'excel.link', 'export', 'fabisearch', 'fdaPDE',  'filters', 'fingerPro', 'fitbitViz', 'forestdata', 'FPCdpca',  'frontiles', 'fsbrain', 'FTSgof', 'gellipsoid', 'gensphere',  'geoelectrics', 'geojsonio', 'geomorph', 'GoodFibes', 'gpg',  'GPGame', 'GPoM', 'gpuR', 'Greymodels', 'gyro', 'HDiR', 'hillshader',  'HUM', 'HybridMicrobiomes', 'hyper.fit', 'hypergeo2', 'ICSClust',  'interpolation', 'IOLS', 'ivdoctr', 'JFM', 'JSDNE', 'kernhaz',  'KernSmoothIRT', 'KeyboardSimulator', 'kml3d', 'kpcaIG', 'lgpr',  'LSAfun', 'Maeswrap', 'maotai', 'mapping', 'mathml', 'mcauchyd',  'MDSGUI', 'MDSMap', 'MediaNews', 'metadynminer3d', 'metajam',  'MetSizeR', 'mggd', 'minired', 'MLE', 'moc.gapbk', 'molaR', 'morph',  'Morpho', 'morphomap', 'MorphoTools2', 'mregions2', 'mstudentd',  'mully', 'multibiplotGUI', 'MultiscaleDTM', 'MultivariateAnalysis',  'mvhist', 'mvinfluence', 'mvmesh', 'nat', 'nat.nblast', 'nat.templatebrains',  'neo4jshell', 'nesRdata', 'NetSci', 'NGCHM', 'OceanView', 'OCNet',  'OmopViewer', 'OpenCL', 'optBiomarker', 'optiSolve', 'orthoDr',  'outliers.ts.oga', 'particle.swarm.optimisation', 'patternize',  'pcaL1', 'pgKDEsphere', 'phylotypr', 'plot3Drgl', 'plumberDeploy',  'PolisheR', 'polyhedralCubature', 'PPbigdata', 'practicalSigni',  'predict3d', 'PRTree', 'prWarp', 'qspray', 'qsub', 'qtlc', 'R2PPT',  'R2wd', 'Racmacs', 'RationalMatrix', 'ratioOfQsprays', 'ravetools',  'rayshader', 'Rcplex', 'RcppMagicEnum', 'rdflib', 'redatamx',  'redland', 'refreg', 'resultant', 'rFUSION', 'rgl2gltf', 'rglplus',  'Riemann', 'rivnet', 'rmapzen', 'Rmpi', 'rmutil', 'RMVL', 'rMVP',  'RMySQL', 'Rnanoflann', 'RNCBIEUtilsLibs', 'rncl', 'rnetcarto',  'RNetCDF', 'RNetLogo', 'rngWELL', 'RNifti', 'RNiftyReg', 'Rnmr1D',  'rnndescent', 'robCompositions', 'RobExtremes', 'robfilter',  'RobGARCHBoot', 'RobKF', 'RoBMA', 'robmixglm', 'roboBayes', 'robregcc',  'RoBSA', 'robsel', 'robslopes', 'RobStatTM', 'robStepSplitReg',  'robsurvey', 'robust', 'RobustAFT', 'robustbase', 'robustBLME',  'RobustCalibration', 'robustcov', 'robusTest', 'robustETM', 'RobustGaSP',  'robustHD', 'robustmatrix', 'robustrank', 'robustvarComp', 'RockFab',  'rococo', 'rocTree', 'rofanova', 'Rogue', 'ROI.plugin.cplex',  'ROI.plugin.symphony', 'roll', 'rolog', 'Rook', 'rootSolve',  'Ropj', 'roptim', 'ROracle', 'rotasym', 'rotations', 'RoughSets',  'round', 'RPatternJoin', 'Rpdb', 'RPointCloud', 'Rpolyhedra',  'rpyANTs', 'RQuantLib', 'rsat', 'RSDK', 'rsofun', 'RSP', 'rsparse',  'RSpectra', 'rSpectral', 'Rssa', 'RSSL', 'rstan', 'rstanarm',  'rstanbdp', 'rstanemax', 'rstiefel', 'RStoolbox', 'rStrava',  'rstream', 'rsubgroup', 'rsvddpd', 'rsvg', 'Rsymphony', 'rsyslog',  'RTCC', 'rtdists', 'RTextTools', 'rtk', 'rtkore', 'rTLsDeep',  'RTMB', 'rtmpt', 'rtop', 'RTransferEntropy', 'rtrend', 'RTriangle',  'rTRNG', 'rts2', 'RTSA', 'Rtsne', 'Rttf2pt1', 'rTwig', 'Rtwobitlib',  'rubias'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-8'))"
+      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('rubias', 'rucrdtw',  'rugarch', 'ruimtehol', 'runner', 'Runuran', 'ruv', 'rvalues',  'Rvcg', 'rvg', 'rviewgraph', 'rvinecopulib', 'Rwave', 'RWDataPlyr',  'RWeka', 'RWekajars', 'rwfec', 'RWiener', 'RWinEdt', 'RWNN',  'Rwofost', 'RxnSim', 'rxylib', 'Ryacas0', 'RZigZag', 'rzmq',  'RZooRoH', 's2', 's2net', 'saccadr', 'sads', 'saeczi', 'saeMSPE',  'saeRobust', 'SAGMM', 'SALES', 'salso', 'SAM', 'SAMGEP', 'samon',  'sampling', 'SamplingBigData', 'samplingVarEst', 'samplr', 'samurais',  'sanic', 'sanitizers', 'SANple', 'santoku', 'SANvi', 'SAPP',  'SAR', 'sarima', 'sarsop', 'sasfunclust', 'sass', 'satellite',  'SBCK', 'sbde', 'sbfc', 'sBIC', 'sbm', 'SBmedian', 'sbmSDP',  'sbo', 'sboost', 'sbrl', 'SC.MEB', 'scagnostics', 'Scalelink',  'ScaleSpikeSlab', 'scalpel', 'scar', 'ScatterDensity', 'scattermore',  'SCCI', 'scclust', 'sccore', 'scDHA', 'scellpam', 'SCEPtER',  'SCEPtERbinary', 'scINSIGHT', 'SCIntRuler', 'scistreer', 'scITD',  'scMappR', 'scModels', 'scoper', 'scorematchingad', 'scorepeak',  'scoringRules', 'SCORNET', 'scout', 'scquantum', 'scrm', 'scrypt',  'scs', 'sdcMicro', 'sdcTable', 'sde', 'sdetorus', 'sdmTMB', 'SDMtune',  'sdpdth', 'sdprisk', 'sdrt', 'sdwd', 'SearchTrees', 'seas', 'secretbase',  'secsse', 'secure', 'seededlda', 'segclust2d', 'segen', 'segmag',  'segmenTier', 'segmentr', 'segMGarch', 'seismicRoll', 'SEL',  'selectiveInference', 'SELF', 'SemiCompRisks', 'semidist', 'semver',  'sendigR', 'SensMap', 'SenSpe', 'sentencepiece', 'sentometrics',  'sentopics', 'SeqDetect', 'seqHMM', 'seqinr', 'SeqKat', 'seqminer',  'SeqNet', 'seqtrie', 'SequenceSpikeSlab', 'sequoia', 'serrsBayes',  'Seurat', 'SeuratObject', 'sfcr', 'sfcurve', 'sfheaders', 'SFS',  'SFSI', 'sgd', 'SGDinference', 'sgeostat', 'SGL', 'sglasso',  'sgolay', 'SGPR', 'shapes', 'shapr', 'sharpeRratio', 'sharpPen',  'SheetReader', 'shide', 'ShiftConvolvePoibin', 'shiftR', 'shinyExprPortal',  'shinylive', 'shinyMixR', 'shinyRGL', 'showtext', 'shp2graph',  'shrinkDSM', 'shrinkTVP', 'SHT', 'Sieve', 'sift', 'signal', 'signalHsmm',  'signnet', 'SigTree', 'SILGGM', 'SimBIID', 'simcdm', 'simcross',  'simecol', 'simer', 'simest', 'SimEUCartelLaw', 'simfam', 'simFrame',  'SimInf', 'SimJoint', 'simmer', 'simplace', 'simplexreg', 'simplextree',  'simPop', 'simputation', 'SimReg', 'simRestore', 'SiMRiv', 'simstudy',  'SimSurvNMarker', 'simtrial', 'simts', 'singR', 'SiPhyNetwork',  'SIRmcmc', 'sirt'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-8'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
       # RInno: Windows-only